sci-biology/ants: version bump 2.3.1_p20191013

Package-Manager: Portage-2.3.79, Repoman-2.3.18
Signed-off-by: Horea Christian <chr@chymera.eu>

3 files changed, 77 insertions, 1 deletions

diff --git a/sci-biology/ants/Manifest b/sci-biology/ants/Manifest
index 5c411c55a..9f9c4b333 100644
--- a/sci-biology/ants/Manifest
+++ b/sci-biology/ants/Manifest
@@ -1 +1,2 @@
 DIST ants-2.3.1.tar.gz 2437950 BLAKE2B 60ffb1b017d066efd9cfc689af7877fb394c9828033c9d9e4542df723eb75e52ada490cbf8ecab0d7f149cc1b22a500791fdbe7872f7ae593a70fa1853c54d00 SHA512 c22af10b7aed1dc5c6b06d6b7d3b2c33ced382926ab5972dd55e4766ff0269330bf01e6975712d991e96c5d9d23f78c8081a3ff475ea92d539c695105b5cfe9a
+DIST ants_testdata-2.3.1_p20191013.tar.xz 25056144 BLAKE2B 7e7535fbe6d7c2e2e0635782b4678fd2cab072ae629cafb361d21291d5b68de086c31f555e1a2008e112601d7c61713461c27e3ac0a1732e7c14c88f73e89781 SHA512 5a636f11952355be3c85d4a36faa84409bace15a7fcd675b20bc8eee83f1969773f6fe5cde31cb7c46bd1baeca21dc8324b1007e6126717f1653bdeb906c8e50
diff --git a/sci-biology/ants/ants-2.3.1_p20191013.ebuild b/sci-biology/ants/ants-2.3.1_p20191013.ebuild
new file mode 100644
index 000000000..5dd2c8145
--- /dev/null
+++ b/sci-biology/ants/ants-2.3.1_p20191013.ebuild
@@ -0,0 +1,72 @@
+# Copyright 1999-2019 Gentoo Authors
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=7
+
+CMAKE_MAKEFILE_GENERATOR="emake"
+
+inherit cmake-utils git-r3 multilib
+
+DESCRIPTION="Advanced Normalitazion Tools for neuroimaging"
+HOMEPAGE="http://stnava.github.io/ANTs/"
+SRC_URI="
+	test? (
+		http://chymera.eu/distfiles/ants_testdata-${PV}.tar.xz
+	)
+"
+EGIT_REPO_URI="https://github.com/stnava/ANTs.git"
+EGIT_COMMIT="f78b2d4a382d3090230641b5ade5da28962dad04"
+
+SLOT="0"
+LICENSE="BSD"
+KEYWORDS="~amd64 ~x86"
+IUSE="test vtk"
+
+DEPEND="
+	vtk? (
+		~sci-libs/itk-5.0.1[vtkglue]
+		sci-libs/vtk
+	)
+	!vtk? (	~sci-libs/itk-5.0.1 )
+"
+RDEPEND="${DEPEND}"
+
+PATCHES=(
+	"${FILESDIR}/${P}-logic.patch"
+	"${FILESDIR}/${P}-paths.patch"
+)
+
+src_unpack() {
+	git-r3_src_unpack
+	if use test; then
+		mkdir -p "${S}/.ExternalData/MD5" || die "Could not create test data directory."
+		tar xvf "${DISTDIR}/ants_testdata-${PV}.tar.xz" -C "${S}/.ExternalData/MD5/" > /dev/null || die "Could not unpack test data."
+	fi
+}
+
+src_configure() {
+	local mycmakeargs=(
+		-DUSE_SYSTEM_ITK=ON
+		-DITK_DIR="/usr/include/ITK-5.0/"
+		-DBUILD_TESTING="$(usex test ON OFF)"
+		-DUSE_VTK=$(usex vtk ON OFF)
+		-DUSE_SYSTEM_VTK=$(usex vtk ON OFF)
+	)
+	use vtk && mycmakeargs+=(
+		-DVTK_DIR="/usr/include/vtk-8.1/"
+	)
+	use test && mycmakeargs+=(
+		-DExternalData_OBJECT_STORES="${S}/.ExternalData/MD5"
+	)
+	cmake-utils_src_configure
+}
+
+src_install() {
+	BUILD_DIR="${WORKDIR}/${P}_build/ANTS-build"
+	cmake-utils_src_install
+	cd "${WORKDIR}/${P}/Scripts" || die "scripts dir not found"
+	dobin *.sh
+	dodir /usr/$(get_libdir)/ants
+	install -t "${D}"/usr/$(get_libdir)/ants * || die
+	doenvd "${FILESDIR}"/99ants
+}
diff --git a/sci-biology/ants/metadata.xml b/sci-biology/ants/metadata.xml
index 6d6b0d88a..87d2feb05 100644
--- a/sci-biology/ants/metadata.xml
+++ b/sci-biology/ants/metadata.xml
@@ -2,7 +2,7 @@
 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
 <pkgmetadata>
 	<maintainer type="person">
-		<email>horea.christ@gmail.com</email>
+		<email>chr@chymera.eu</email>
 		<name>Horea Christian</name>
 	</maintainer>
 	<maintainer type="project">
@@ -18,4 +18,7 @@
 		image analysis. ANTs depends on the Insight ToolKit (ITK), a widely used
 		medical image processing library to which ANTs developers contribute.
 	</longdescription>
+	<use>
+		<flag name="vtk">Optional support for a number of surface enabled tools (via sci-libs/vtk).</flag>
+	</use>
 </pkgmetadata>