diff options
| author |   Aisha Tammy <gentoo@aisha.cc> | 2020-09-22 07:08:45 -0400 |
|---|---|---|
| committer | Aisha Tammy <gentoo@aisha.cc> | 2020-09-22 07:08:45 -0400 |
| commit | 18aa9950c2cb926a31bce5ae82792ec5115a1941 (patch) | |
| tree | ca2769febefde510ba36a4a895bcd878c595707d /sci-biology | |
| parent | sci-biology/picard: drop package (diff) | |
| download | sci-18aa9950c2cb926a31bce5ae82792ec5115a1941.tar.gz sci-18aa9950c2cb926a31bce5ae82792ec5115a1941.tar.bz2 sci-18aa9950c2cb926a31bce5ae82792ec5115a1941.zip | |
sci-biology/plink: drop package
present in ::gentoo
Package-Manager: Portage-3.0.7, Repoman-3.0.1
Signed-off-by: Aisha Tammy <gentoo@aisha.cc>
Diffstat (limited to 'sci-biology')
| -rw-r--r-- | sci-biology/plink/Manifest | 1 | ||||
| -rw-r--r-- | sci-biology/plink/metadata.xml | 8 | ||||
| -rw-r--r-- | sci-biology/plink/plink-1.90_pre160731.ebuild | 65 |
3 files changed, 0 insertions, 74 deletions
diff --git a/sci-biology/plink/Manifest b/sci-biology/plink/Manifest deleted file mode 100644 index c93526052..000000000 --- a/sci-biology/plink/Manifest +++ /dev/null @@ -1 +0,0 @@ -DIST plink-1.90_pre160731.zip 1069338 SHA256 9cda19d4a4812d2c91f7407bcfd1d76106bce8b4899745c0139a92baf84b9c0a SHA512 184a3da42e514a8478de1da637d0f2d22bd9c178113d0096b937b6e2e0a8372897f2dba013be36ab518fa9b801fa6de0a410fea41d8673af612f53b36b98c79b WHIRLPOOL bdc290a9d0bd7778c68b1fa963b770082b9043392a5e81dfc666fd07f00a72ddd5ef307c451e522b489a0c5421d4cfc06b5fc2abed3549eeade0e86760cdd6fd diff --git a/sci-biology/plink/metadata.xml b/sci-biology/plink/metadata.xml deleted file mode 100644 index 8417d1580..000000000 --- a/sci-biology/plink/metadata.xml +++ /dev/null @@ -1,8 +0,0 @@ -<?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> -<pkgmetadata> - <maintainer type="project"> - <email>sci-biology@gentoo.org</email> - <name>Gentoo Biology Project</name> - </maintainer> -</pkgmetadata> diff --git a/sci-biology/plink/plink-1.90_pre160731.ebuild b/sci-biology/plink/plink-1.90_pre160731.ebuild deleted file mode 100644 index 525cfbcbb..000000000 --- a/sci-biology/plink/plink-1.90_pre160731.ebuild +++ /dev/null @@ -1,65 +0,0 @@ -# Copyright 1999-2016 Gentoo Foundation -# Distributed under the terms of the GNU General Public License v2 - -EAPI=5 - -inherit eutils toolchain-funcs - -DESCRIPTION="Whole genome association analysis toolset" -HOMEPAGE="http://pngu.mgh.harvard.edu/~purcell/plink - https://www.cog-genomics.org/plink2/" -SRC_URI="https://www.cog-genomics.org/static/bin/plink160731/plink_src.zip -> ${P}.zip" - -LICENSE="GPL-3+" -SLOT="0" -KEYWORDS="~amd64 ~x86" -IUSE="lapack" - -DEPEND=" - app-arch/unzip - virtual/pkgconfig" -RDEPEND=" - sys-libs/zlib - lapack? ( virtual/lapack - virtual/cblas )" - -S="${WORKDIR}/" - -# Package collides with net-misc/putty. Renamed to p-link following discussion with Debian. -# Package contains bytecode-only jar gPLINK.jar. Ignored, notified upstream. - -src_prepare() { - rm -rf zlib-1.2.8 || die - sed \ - -e 's:zlib-1.2.8/zlib.h:zlib.h:g' \ - -i *.{c,h} || die - - sed \ - -e 's:g++:$(CXX):g' \ - -e 's:gcc:$(CC):g' \ - -e 's:gfortran:$(FC):g' \ - -i Makefile || die - if ! use lapack; then - sed -e 's/^NO_LAPACK =/NO_LAPACK = 1/' -i Makefile || die - sed -e 's@^// #define NOLAPACK@#define NOLAPACK@' -i plink_common.h || die - fi - tc-export PKG_CONFIG -} - -src_compile() { - local blasflags - use lapack && blasflags="$($(tc-getPKG_CONFIG) --libs lapack cblas)" - emake \ - CXX=$(tc-getCXX) \ - CFLAGS="${CFLAGS}" \ - ZLIB="$($(tc-getPKG_CONFIG) --libs zlib)" \ - BLASFLAGS="$blasflags" -} - -src_install() { - newbin plink p-link -} - -pkg_postinst(){ - einfo "plink binary is now renamed to p-link to avoid file collision" -} |