Second try to clean spaces in metadata.xml

Signed-off-by: Justin Lecher <jlec@gentoo.org>

19 files changed, 83 insertions, 83 deletions

diff --git a/sci-biology/Atlas2/metadata.xml b/sci-biology/Atlas2/metadata.xml
index 7e2e21ffd..7ce5225f5 100644
--- a/sci-biology/Atlas2/metadata.xml
+++ b/sci-biology/Atlas2/metadata.xml
@@ -10,11 +10,11 @@
 		<name>Gentoo Biology Project</name>
 	</maintainer>
 	<longdescription>
-    Atlas2 is a next-generation sequencing suite of variant analysis
-    tools specializing in the separation of true SNPs and insertions
-    and deletions (indels) from sequencing and mapping errors in Whole
-    Exome Capture Sequencing (WECS) data.
-  </longdescription>
+Atlas2 is a next-generation sequencing suite of variant analysis
+tools specializing in the separation of true SNPs and insertions
+and deletions (indels) from sequencing and mapping errors in Whole
+Exome Capture Sequencing (WECS) data.
+</longdescription>
 	<upstream>
 		<remote-id type="sourceforge">downloads</remote-id>
 	</upstream>
diff --git a/sci-biology/SPAdes/metadata.xml b/sci-biology/SPAdes/metadata.xml
index f1a8d4826..0845ad7a4 100644
--- a/sci-biology/SPAdes/metadata.xml
+++ b/sci-biology/SPAdes/metadata.xml
@@ -10,8 +10,8 @@
 		<name>Gentoo Biology Project</name>
 	</maintainer>
 	<longdescription>
-    truSPAdes includes support for Illumina TruSeq Synthetic Long Read technology reads.
-    hammer and ionhammer are read error correcting modules for Illumina /IonTorrent reads, resp.
-    dipspades is assembly module for highly polymorphic diploid genomes
-  </longdescription>
+truSPAdes includes support for Illumina TruSeq Synthetic Long Read technology reads.
+hammer and ionhammer are read error correcting modules for Illumina /IonTorrent reads, resp.
+dipspades is assembly module for highly polymorphic diploid genomes
+</longdescription>
 </pkgmetadata>
diff --git a/sci-biology/aghermann/metadata.xml b/sci-biology/aghermann/metadata.xml
index 7d37ce2e8..ff364c93d 100644
--- a/sci-biology/aghermann/metadata.xml
+++ b/sci-biology/aghermann/metadata.xml
@@ -10,10 +10,10 @@
 		<name>Gentoo Biology Project</name>
 	</maintainer>
 	<longdescription>
-    Aghermann is a program designed around a common workflow in
-    sleep-research, complete with scoring facility; cairo subpixel
-    drawing on screen or to file; conventional PSD and EEG Micrcontinuity
-    profiles; Independent Component Analysis; artifact detection; and
-    Process S simulation following Achermann et al, 1993.
-  </longdescription>
+Aghermann is a program designed around a common workflow in
+sleep-research, complete with scoring facility; cairo subpixel
+drawing on screen or to file; conventional PSD and EEG Micrcontinuity
+profiles; Independent Component Analysis; artifact detection; and
+Process S simulation following Achermann et al, 1993.
+</longdescription>
 </pkgmetadata>
diff --git a/sci-biology/amos/metadata.xml b/sci-biology/amos/metadata.xml
index 5c72bf01a..ddba4784f 100644
--- a/sci-biology/amos/metadata.xml
+++ b/sci-biology/amos/metadata.xml
@@ -14,7 +14,7 @@ AMOS is collection of tools and class interfaces for the assembly of DNA
 sequencing reads. The package includes a robust infrastructure, modular assembly
 pipelines, and tools for overlapping, consensus generation, contigging, and 
 assembly manipulation
-  </longdescription>
+</longdescription>
 	<upstream>
 		<remote-id type="sourceforge">amos</remote-id>
 	</upstream>
diff --git a/sci-biology/ants/metadata.xml b/sci-biology/ants/metadata.xml
index 6f359a5c0..e55eec26d 100644
--- a/sci-biology/ants/metadata.xml
+++ b/sci-biology/ants/metadata.xml
@@ -12,5 +12,5 @@ toolkit. ANTsR is an emerging tool supporting standardized multimodality image a
 on 
 the Insight ToolKit (ITK), a widely used medical image processing library to which ANTs developers 
 contribute.
-  </longdescription>
+</longdescription>
 </pkgmetadata>
diff --git a/sci-biology/autoeditor/metadata.xml b/sci-biology/autoeditor/metadata.xml
index af250f1f8..a9237cbcc 100644
--- a/sci-biology/autoeditor/metadata.xml
+++ b/sci-biology/autoeditor/metadata.xml
@@ -10,16 +10,16 @@
 		<name>Gentoo Biology Project</name>
 	</maintainer>
 	<longdescription>AutoEditor is a program that can automatically correct discrepancies in a
-        multiple alignment by reanalyzing the chromatograms of the discrepant bases.
-        The input to AutoEditor is the multiple alignment in contig form, the sequence
-        and quality values in FASTA format, and the base call positions in
-        "SEQNAME basecallpositions\n" format where the basecall positions are written
-        in hex (4 nibbles per basecall position) concatentated together. The path
-        to the chromatograms for the sequences should be specified with the -c option.
-        More help is available with -h.
+multiple alignment by reanalyzing the chromatograms of the discrepant bases.
+The input to AutoEditor is the multiple alignment in contig form, the sequence
+and quality values in FASTA format, and the base call positions in
+"SEQNAME basecallpositions\n" format where the basecall positions are written
+in hex (4 nibbles per basecall position) concatentated together. The path
+to the chromatograms for the sequences should be specified with the -c option.
+More help is available with -h.
 
-        The output is to a timestamped autoEditor directory that has the input files
-        edited along with other TIGR specific file formats. Sample input data is
-        provided with the distribution in the sample directory.
-    </longdescription>
+The output is to a timestamped autoEditor directory that has the input files
+edited along with other TIGR specific file formats. Sample input data is
+provided with the distribution in the sample directory.
+</longdescription>
 </pkgmetadata>
diff --git a/sci-biology/biobambam/metadata.xml b/sci-biology/biobambam/metadata.xml
index 25aa7fc17..782a697ab 100644
--- a/sci-biology/biobambam/metadata.xml
+++ b/sci-biology/biobambam/metadata.xml
@@ -14,7 +14,7 @@ bammaskflags: reads BAM and writes BAM while masking (removing) bits from the fl
 bamrecompress: reads BAM and writes BAM with a defined compression setting. This tool is capable of multi-threading.
 bamsort: reads BAM and writes BAM resorted by coordinates or query name
 bamtofastq: reads BAM and writes FastQ; output can be collated or uncollated by query name
-  </longdescription>
+</longdescription>
 	<upstream>
 		<remote-id type="github">gt1/biobambam</remote-id>
 	</upstream>
diff --git a/sci-biology/biobambam2/metadata.xml b/sci-biology/biobambam2/metadata.xml
index 88dabed5a..e22b824df 100644
--- a/sci-biology/biobambam2/metadata.xml
+++ b/sci-biology/biobambam2/metadata.xml
@@ -14,7 +14,7 @@ bammaskflags: reads BAM and writes BAM while masking (removing) bits from the fl
 bamrecompress: reads BAM and writes BAM with a defined compression setting. This tool is capable of multi-threading.
 bamsort: reads BAM and writes BAM resorted by coordinates or query name
 bamtofastq: reads BAM and writes FastQ; output can be collated or uncollated by query name
-  </longdescription>
+</longdescription>
 	<upstream>
 		<remote-id type="github">gt1/biobambam2</remote-id>
 	</upstream>
diff --git a/sci-biology/bismark/metadata.xml b/sci-biology/bismark/metadata.xml
index 7fbe43fac..4c433a8ca 100644
--- a/sci-biology/bismark/metadata.xml
+++ b/sci-biology/bismark/metadata.xml
@@ -19,5 +19,5 @@ features are: (1) Bisulfite mapping and methylation calling in one single step;
 and gapped alignments; (4) Alignment seed length, number of mismatches etc. are
 adjustable; (5) Output discriminates between cytosine methylation in CpG, CHG
 and CHH context.
-  </longdescription>
+</longdescription>
 </pkgmetadata>
diff --git a/sci-biology/bru2nii/metadata.xml b/sci-biology/bru2nii/metadata.xml
index 65fc7e751..30f63e57e 100644
--- a/sci-biology/bru2nii/metadata.xml
+++ b/sci-biology/bru2nii/metadata.xml
@@ -6,10 +6,10 @@
 		<name>Gentoo Science Project</name>
 	</maintainer>
 	<longdescription lang="en">
-    This is a simple tool for converting Bruker ParaVision MRI data to
-    the NIfTI file format. It includes both a drag-and-drop graphical
-    interface (Bru2Nii) as well as a command line tool (Bru2).
-  </longdescription>
+This is a simple tool for converting Bruker ParaVision MRI data to
+the NIfTI file format. It includes both a drag-and-drop graphical
+interface (Bru2Nii) as well as a command line tool (Bru2).
+</longdescription>
 	<upstream>
 		<remote-id type="github">neurolabusc/Bru2Nii</remote-id>
 	</upstream>
diff --git a/sci-biology/caftools/metadata.xml b/sci-biology/caftools/metadata.xml
index ebb2f204c..224641279 100644
--- a/sci-biology/caftools/metadata.xml
+++ b/sci-biology/caftools/metadata.xml
@@ -10,8 +10,8 @@
 		<name>Gentoo Biology Project</name>
 	</maintainer>
 	<longdescription>
-  CAF is a text format for describing sequence assemblies. It is acedb-compliant
-  and is an extension of the ace-file format used earlier, but with support for 
-  base quality measures and a more extensive description of the Sequence data.
-  </longdescription>
+CAF is a text format for describing sequence assemblies. It is acedb-compliant
+and is an extension of the ace-file format used earlier, but with support for 
+base quality measures and a more extensive description of the Sequence data.
+</longdescription>
 </pkgmetadata>
diff --git a/sci-biology/cd-hit/metadata.xml b/sci-biology/cd-hit/metadata.xml
index 95aec8089..4112e9551 100644
--- a/sci-biology/cd-hit/metadata.xml
+++ b/sci-biology/cd-hit/metadata.xml
@@ -19,7 +19,7 @@ datasets and identifies the sequences in db2 that are similar to db1 above
 a threshold. CD-HIT-454 is a program to identify natural and artificial 
 duplicates from pyrosequencing reads. The usage of other programs and 
 scripts can be found in CD-HIT user's guide.
-	</longdescription>
+</longdescription>
 	<upstream>
 		<remote-id type="github">weizhongli/cdhit</remote-id>
 	</upstream>
diff --git a/sci-biology/cnrun/metadata.xml b/sci-biology/cnrun/metadata.xml
index 7e97ca658..2ebacbc5f 100644
--- a/sci-biology/cnrun/metadata.xml
+++ b/sci-biology/cnrun/metadata.xml
@@ -10,23 +10,23 @@
 		<name>Gentoo Biology Project</name>
 	</maintainer>
 	<longdescription>
-    CNrun is a neuronal network simulator, with these features:
+CNrun is a neuronal network simulator, with these features:
 
-    * a conductance- and rate-based Hodgkin-Huxley neurons, a Rall and
-      Alpha-Beta synapses;
-    * a 6-5 Runge-Kutta integration method: slow but precise, adjustable;
-    * Poisson, Van der Pol, Colpitts oscillators and interface for
-      external stimulation sources;
-    * NeuroML network topology import/export;
-    * logging state variables, spikes;
-    * implemented as a Lua module, for scripting model behaviour (e.g.,
-      to enable plastic processes regulated by model state);
-    * interaction (topology push/pull, async connections) with other
-      cnrun models running elsewhere on a network, with interactions
-      (planned).
+* a conductance- and rate-based Hodgkin-Huxley neurons, a Rall and
+Alpha-Beta synapses;
+* a 6-5 Runge-Kutta integration method: slow but precise, adjustable;
+* Poisson, Van der Pol, Colpitts oscillators and interface for
+external stimulation sources;
+* NeuroML network topology import/export;
+* logging state variables, spikes;
+* implemented as a Lua module, for scripting model behaviour (e.g.,
+to enable plastic processes regulated by model state);
+* interaction (topology push/pull, async connections) with other
+cnrun models running elsewhere on a network, with interactions
+(planned).
 
-    Note that there is no `cnrun' executable, which existed in cnrun-1.*.
-    Instead, you write a script for your simulation in Lua, and execute
-    it as detailed in /usr/share/lua-cnrun/examples/example1.lua.
-  </longdescription>
+Note that there is no `cnrun' executable, which existed in cnrun-1.*.
+Instead, you write a script for your simulation in Lua, and execute
+it as detailed in /usr/share/lua-cnrun/examples/example1.lua.
+</longdescription>
 </pkgmetadata>
diff --git a/sci-biology/dipy/metadata.xml b/sci-biology/dipy/metadata.xml
index de88739b5..e198cb853 100644
--- a/sci-biology/dipy/metadata.xml
+++ b/sci-biology/dipy/metadata.xml
@@ -10,11 +10,11 @@
 		<name>Gentoo Science Project</name>
 	</maintainer>
 	<longdescription lang="en">
-    Dipy is a free and open source software project for computational neuroanatomy, focusing mainly on 
-    diffusion magnetic resonance imaging (dMRI) analysis. It implements a broad range of algorithms for 
-    denoising, registration, reconstruction, tracking, clustering, visualization, and statistical 
-    analysis of MRI data.
-  </longdescription>
+Dipy is a free and open source software project for computational neuroanatomy, focusing mainly on 
+diffusion magnetic resonance imaging (dMRI) analysis. It implements a broad range of algorithms for 
+denoising, registration, reconstruction, tracking, clustering, visualization, and statistical 
+analysis of MRI data.
+</longdescription>
 	<upstream>
 		<remote-id type="github">nipy/dipy</remote-id>
 	</upstream>
diff --git a/sci-biology/discrover/metadata.xml b/sci-biology/discrover/metadata.xml
index 90c7c21bc..6f5916ea8 100644
--- a/sci-biology/discrover/metadata.xml
+++ b/sci-biology/discrover/metadata.xml
@@ -7,20 +7,20 @@
 	</maintainer>
 	<use>
 		<flag name="cairo">
-      Use Cairo for sequence logo plotting capabilities
-    </flag>
+Use Cairo for sequence logo plotting capabilities
+</flag>
 		<flag name="dreme">
-      Enable usage of DREME from the MEME package for seeding
-    </flag>
+Enable usage of DREME from the MEME package for seeding
+</flag>
 		<flag name="lto">
-      Compile with link-time optimization (LTO)
-    </flag>
+Compile with link-time optimization (LTO)
+</flag>
 		<flag name="misc_scripts">
-      Install miscellaneous scripts
-    </flag>
+Install miscellaneous scripts
+</flag>
 		<flag name="rmathlib">
-      Link to the standalone Rmathlib for statistical routines
-    </flag>
+Link to the standalone Rmathlib for statistical routines
+</flag>
 	</use>
 	<upstream>
 		<remote-id type="github">maaskola/discrover</remote-id>
diff --git a/sci-biology/nilearn/metadata.xml b/sci-biology/nilearn/metadata.xml
index 983b74350..2010f6625 100644
--- a/sci-biology/nilearn/metadata.xml
+++ b/sci-biology/nilearn/metadata.xml
@@ -10,10 +10,10 @@
 		<name>Gentoo Science Project</name>
 	</maintainer>
 	<longdescription lang="en">
-    Nilearn is a Python module for fast and easy statistical learning on NeuroImaging data.
-    It leverages the scikit-learn Python toolbox for multivariate statistics with applications
-    such as predictive modelling, classification, decoding, or connectivity analysis.
-  </longdescription>
+Nilearn is a Python module for fast and easy statistical learning on NeuroImaging data.
+It leverages the scikit-learn Python toolbox for multivariate statistics with applications
+such as predictive modelling, classification, decoding, or connectivity analysis.
+</longdescription>
 	<use>
 		<flag name="plot">Adds optional dependency needed for plotting function subset.</flag>
 	</use>
diff --git a/sci-biology/nireg/metadata.xml b/sci-biology/nireg/metadata.xml
index 0885cf813..d6592a893 100644
--- a/sci-biology/nireg/metadata.xml
+++ b/sci-biology/nireg/metadata.xml
@@ -10,6 +10,6 @@
 		<name>Gentoo Science Project</name>
 	</maintainer>
 	<longdescription lang="en">
-		Nireg is a package for nytive-python image registration.
-	</longdescription>
+Nireg is a package for nytive-python image registration.
+</longdescription>
 </pkgmetadata>
diff --git a/sci-biology/nistats/metadata.xml b/sci-biology/nistats/metadata.xml
index b438f4409..5b04d23d9 100644
--- a/sci-biology/nistats/metadata.xml
+++ b/sci-biology/nistats/metadata.xml
@@ -10,7 +10,7 @@
 		<name>Gentoo Science Project</name>
 	</maintainer>
 	<longdescription lang="en">
-    Nistats is a Python module for fast and easy modeling and statistical analysis of 
-    functional Magnetic Resonance Imaging data.
+Nistats is a Python module for fast and easy modeling and statistical analysis of 
+functional Magnetic Resonance Imaging data.
 </longdescription>
 </pkgmetadata>
diff --git a/sci-biology/nitime/metadata.xml b/sci-biology/nitime/metadata.xml
index 549788bdf..a09589ab6 100644
--- a/sci-biology/nitime/metadata.xml
+++ b/sci-biology/nitime/metadata.xml
@@ -10,9 +10,9 @@
 		<name>Gentoo Science Project</name>
 	</maintainer>
 	<longdescription lang="en">
-		Nitime is a library for time-series analysis of data from neuroscience experiments
-		in both the time and spectral domains.
-	</longdescription>
+Nitime is a library for time-series analysis of data from neuroscience experiments
+in both the time and spectral domains.
+</longdescription>
 	<upstream>
 		<remote-id type="github">nipy/nitime</remote-id>
 	</upstream>