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| author |   Andrew Ammerlaan <andrewammerlaan@riseup.net> | 2021-02-01 08:41:14 +0100 |
|---|---|---|
| committer | Andrew Ammerlaan <andrewammerlaan@riseup.net> | 2021-02-01 08:41:14 +0100 |
| commit | 295c07c0f1dc210afcb0131f0451f86b3c83b1b3 (patch) | |
| tree | 7888c06825e8dadb4d0e470155bf424044176e39 /sci-biology | |
| parent | sci-mathematics/Macaulay: remove pack, py2 only (diff) | |
| download | sci-295c07c0f1dc210afcb0131f0451f86b3c83b1b3.tar.gz sci-295c07c0f1dc210afcb0131f0451f86b3c83b1b3.tar.bz2 sci-295c07c0f1dc210afcb0131f0451f86b3c83b1b3.zip | |
sci-biology/MaSuRCA: version bump 4.0.1
Package-Manager: Portage-3.0.14, Repoman-3.0.2
Signed-off-by: Andrew Ammerlaan <andrewammerlaan@riseup.net>
Diffstat (limited to 'sci-biology')
| -rw-r--r-- | sci-biology/MaSuRCA/MaSuRCA-4.0.1.ebuild (renamed from sci-biology/MaSuRCA/MaSuRCA-3.2.2.ebuild) | 26 | ||||
| -rw-r--r-- | sci-biology/MaSuRCA/Manifest | 3 |
2 files changed, 10 insertions, 19 deletions
diff --git a/sci-biology/MaSuRCA/MaSuRCA-3.2.2.ebuild b/sci-biology/MaSuRCA/MaSuRCA-4.0.1.ebuild index 2f2f9ddbd..8e6d2925e 100644 --- a/sci-biology/MaSuRCA/MaSuRCA-3.2.2.ebuild +++ b/sci-biology/MaSuRCA/MaSuRCA-4.0.1.ebuild @@ -1,35 +1,27 @@ -# Copyright 1999-2017 Gentoo Foundation +# Copyright 1999-2021 Gentoo Authors # Distributed under the terms of the GNU General Public License v2 -EAPI=6 +EAPI=7 DESCRIPTION="de Bruijn and OLC assembler for Sanger, Roche 454, Illumina, Pacbio, Nanopore" HOMEPAGE="http://www.genome.umd.edu/masurca.html http://bioinformatics.oxfordjournals.org/content/29/21/2669 - http://biorxiv.org/content/biorxiv/early/2016/07/26/066100.full.pdf" -SRC_URI="${P}.tar.gz - ftp://ftp.genome.umd.edu/pub/MaSuRCA/MaSuRCA_QuickStartGuide.pdf" + https://biorxiv.org/content/biorxiv/early/2016/07/26/066100.full.pdf" +SRC_URI="https://github.com/alekseyzimin/masurca/releases/download/v${PV}/${P}.tar.gz" LICENSE="BSD GPL-2 GPL-3" SLOT="0" -KEYWORDS="" -IUSE="" +KEYWORDS="~amd64" -DEPEND=">=dev-lang/perl-5.8 - app-arch/bzip2" +DEPEND=" + >=dev-lang/perl-5.8 + app-arch/bzip2 +" RDEPEND="${DEPEND}" -RESTRICT="fetch" - -src_configure(){ - ./install.sh || die -} - src_compile(){ ./install.sh || die } - src_install(){ dobin masurca - dodoc sr_config_example.txt } diff --git a/sci-biology/MaSuRCA/Manifest b/sci-biology/MaSuRCA/Manifest index f15817f90..330ac8de3 100644 --- a/sci-biology/MaSuRCA/Manifest +++ b/sci-biology/MaSuRCA/Manifest @@ -1,2 +1 @@ -DIST MaSuRCA-3.2.2.tar.gz 23269939 SHA256 b0535e9cca6fa3699290d5a31f3d30b6270ba3c75f8197d8bd142ba81eed5202 SHA512 274184de19e20e7e6eb31bdd62f69e02ea77657da1821207edb5c0f3a9c0d829426d14e4551d594411a17ca2ae8fdc81c3b2b19ae6c3978b641e60b8a80a2032 WHIRLPOOL 7e24c3150771083ed5cf9792c98db9db79d3b25178e693c5de93899f6bf028cc90b15027b6e68bbf36e4fff60010351db2cee6f60d5e5248b66eb308298021f8 -DIST MaSuRCA_QuickStartGuide.pdf 153680 BLAKE2B 608a7f962fbec2982626f14a0fe3d7c7aa8e57582b9366c48e8981706edadce44f304f3addecb1f4f556de9fdd57500760a82bd9e00a85d34e7f35a3d003a8d4 SHA512 d887c36ec30cb89ecbde73517055592fd370721bb8945f293c508d0ca6851160326bf2d2b3ade89324611ea5d4bc238068f422df4c5693672623961383635f24 +DIST MaSuRCA-4.0.1.tar.gz 26502309 BLAKE2B 658c3a85d3d16bc966f50def9b0f98503f25f89893a18f6b7c361592dc2b20875f4c2b78e55e7279e47d0d381e9f973185da7cf7a1529c617c82b0789dea4183 SHA512 5a52dc6667b501ef5ee33f8c30a516a466b39b061ae3bee93f3e6a9cc9dd21503365671d93858165290b3200c859772324fdb12f8bdab235b3ff08c158c4dd66 |