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| author |   Martin Mokrejs <mmokrejs@fold.natur.cuni.cz> | 2019-03-07 20:20:38 +0100 |
|---|---|---|
| committer | Martin Mokrejs <mmokrejs@fold.natur.cuni.cz> | 2019-03-07 20:20:38 +0100 |
| commit | 2b35fa3317ef51f0de6002b65efa23605ee5e0cb (patch) | |
| tree | 2920b513c8d9c4aeab3a9928e717757c7ceeac28 /sci-biology | |
| parent | sci-biology/ParaAT: add missing default in src_prepare() (diff) | |
| download | sci-2b35fa3317ef51f0de6002b65efa23605ee5e0cb.tar.gz sci-2b35fa3317ef51f0de6002b65efa23605ee5e0cb.tar.bz2 sci-2b35fa3317ef51f0de6002b65efa23605ee5e0cb.zip | |
sci-biology/CAT: new package
Does not compile, probably requires some older C++ standard?
Package-Manager: Portage-2.3.62, Repoman-2.3.12
Signed-off-by: Martin Mokrejs <mmokrejs@fold.natur.cuni.cz>
Diffstat (limited to 'sci-biology')
| -rw-r--r-- | sci-biology/CAT/CAT-1.3.ebuild | 34 | ||||
| -rw-r--r-- | sci-biology/CAT/Manifest | 1 | ||||
| -rw-r--r-- | sci-biology/CAT/files/CAT-1.3_respect_env_variables.patch | 11 | ||||
| -rw-r--r-- | sci-biology/CAT/metadata.xml | 12 |
4 files changed, 58 insertions, 0 deletions
diff --git a/sci-biology/CAT/CAT-1.3.ebuild b/sci-biology/CAT/CAT-1.3.ebuild new file mode 100644 index 000000000..2628c04a9 --- /dev/null +++ b/sci-biology/CAT/CAT-1.3.ebuild @@ -0,0 +1,34 @@ +# Copyright 2019 Gentoo Authors +# Distributed under the terms of the GNU General Public License v2 + +EAPI=7 + +DESCRIPTION="Estimate codon usage bias and its statistical significance" +HOMEPAGE=" + http://bigd.big.ac.cn/tools/cat + http://cbb.big.ac.cn/Software + http://code.google.com/p/composition-analysis-toolkit + http://www.cbrc.kaust.edu.sa/CAT" +SRC_URI="ftp://download.big.ac.cn/bigd/tools/${PN}${PV}.tar.gz -> ${P}.tar.gz" + +LICENSE="GPL-3" +SLOT="0" +KEYWORDS="" +IUSE="" + +PATCHES=( "${FILESDIR}"/CAT-1.3_respect_env_variables.patch ) + +DEPEND="" +RDEPEND="${DEPEND}" +BDEPEND="" + +S="${WORKDIR}/${PN}${PV}" + +src_compile(){ + cd src || die + emake +} + +src_install(){ + dobin CAT +} diff --git a/sci-biology/CAT/Manifest b/sci-biology/CAT/Manifest new file mode 100644 index 000000000..6a092cc28 --- /dev/null +++ b/sci-biology/CAT/Manifest @@ -0,0 +1 @@ +DIST CAT-1.3.tar.gz 1377451 BLAKE2B 835da7949d5158d324314cbd586c7492143dff19eb13e204995f9eb04fa748604e31bfc1c34b7ead73d81548544ec22089575caaa3ecd2f79ef64a6d06802475 SHA512 4ea060efe58dd4a4d4146d5b5f2651b2cef5ae34ac83ec98eff9618d39930c3c05bf1f6949c38c0a2461a82d9fc53361e5f72108071787b4263acb20e4f56e8c diff --git a/sci-biology/CAT/files/CAT-1.3_respect_env_variables.patch b/sci-biology/CAT/files/CAT-1.3_respect_env_variables.patch new file mode 100644 index 000000000..5dff3986c --- /dev/null +++ b/sci-biology/CAT/files/CAT-1.3_respect_env_variables.patch @@ -0,0 +1,11 @@ +--- CAT1.3/src/makefile 2011-03-13 15:05:27.000000000 +0100 ++++ CAT1.3/src/makefile 2019-03-07 20:08:29.988220775 +0100 +@@ -1,6 +1,6 @@ + PRGS = CAT +-CC = g++ +-CFLAGS = -O3 ++CC ?= g++ ++CFLAGS ?= -O3 + + all: $(PRGS) + diff --git a/sci-biology/CAT/metadata.xml b/sci-biology/CAT/metadata.xml new file mode 100644 index 000000000..138cb7705 --- /dev/null +++ b/sci-biology/CAT/metadata.xml @@ -0,0 +1,12 @@ +<?xml version="1.0" encoding="UTF-8"?> +<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<pkgmetadata> + <maintainer type="person"> + <email>mmokrejs@fold.natur.cuni.cz</email> + <name>Martin Mokrejs</name> + </maintainer> + <maintainer type="project"> + <email>sci-biology@gentoo.org</email> + <name>Gentoo Biology Project</name> + </maintainer> +</pkgmetadata> |