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| author |   Martin Mokrejš <mmokrejs@fold.natur.cuni.cz> | 2017-01-10 02:05:02 +0100 |
|---|---|---|
| committer | Martin Mokrejš <mmokrejs@fold.natur.cuni.cz> | 2017-01-10 02:05:02 +0100 |
| commit | 49c918e8544ecb0141046aef3b71795b46dd1fcd (patch) | |
| tree | e4c70fccd990b2d8973198209602c46f41467507 /sci-biology | |
| parent | sci-biology/trinityrnaseq: slightly relax required version numbers (diff) | |
| download | sci-49c918e8544ecb0141046aef3b71795b46dd1fcd.tar.gz sci-49c918e8544ecb0141046aef3b71795b46dd1fcd.tar.bz2 sci-49c918e8544ecb0141046aef3b71795b46dd1fcd.zip | |
sci-biology/vcflib: disctinguish various openmp commandline switches
Package-Manager: Portage-2.3.3, Repoman-2.3.1
Diffstat (limited to 'sci-biology')
| -rw-r--r-- | sci-biology/vcflib/vcflib-9999.ebuild | 19 |
1 files changed, 15 insertions, 4 deletions
diff --git a/sci-biology/vcflib/vcflib-9999.ebuild b/sci-biology/vcflib/vcflib-9999.ebuild index 5a03fe42b..d66d935a4 100644 --- a/sci-biology/vcflib/vcflib-9999.ebuild +++ b/sci-biology/vcflib/vcflib-9999.ebuild @@ -1,4 +1,4 @@ -# Copyright 1999-2016 Gentoo Foundation +# Copyright 1999-2017 Gentoo Foundation # Distributed under the terms of the GNU General Public License v2 # $Id$ @@ -15,9 +15,9 @@ EGIT_REPO_URI="https://github.com/vcflib/vcflib.git" LICENSE="MIT-with-advertising" SLOT="0" KEYWORDS="" -IUSE="mpi" +IUSE="openmp" -DEPEND="mpi? ( sys-cluster/openmpi )" +DEPEND="" RDEPEND="${DEPEND}" # contains bundled sci-biology/htslib ? # see also ./include for possible traces of other bundled sw @@ -26,10 +26,21 @@ src_prepare(){ default sed -e "s/^CXX = g++/CXX = $(tc-getCXX)/" -i Makefile || die sed -e "s/^CXXFLAGS = -O3/CXXFLAGS = ${CXXFLAGS}/" -i Makefile || die + # openmp detection stolen from velvet-1.2.10.ebuild + if use openmp; then + if [[ $(tc-getCXX) =~ g++ ]]; then + local eopenmp=-fopenmp + elif [[ $(tc-getCXX) =~ cxx ]]; then + local eopenmp=-openmp + sed -e "s/-fopenmp/${eopenmp}/" -i Makefile || die + else + elog "Cannot detect compiler type so not setting openmp support" + fi + fi } src_compile(){ - if use mpi ; then + if use openmp ; then emake openmp else emake |