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authorMartin Mokrejš <mmokrejs@fold.natur.cuni.cz>2017-01-10 13:16:12 +0100
committerMartin Mokrejš <mmokrejs@fold.natur.cuni.cz>2017-01-10 13:16:12 +0100
commit4ee5e3f90785b4a1571df2c0d6028a542557977e (patch)
tree5a8f250d0aed34a23369d1f535e2b9021c96f35f /sci-biology
parentsci-biology/gemini: add links to existing docs (diff)
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sci-biology/plinkseq: remove dangling symlinks
Package-Manager: Portage-2.3.3, Repoman-2.3.1
Diffstat (limited to 'sci-biology')
-rw-r--r--sci-biology/plinkseq/plinkseq-0.10.ebuild1
-rw-r--r--sci-biology/plinkseq/plinkseq-9999.ebuild1
2 files changed, 2 insertions, 0 deletions
diff --git a/sci-biology/plinkseq/plinkseq-0.10.ebuild b/sci-biology/plinkseq/plinkseq-0.10.ebuild
index 2934db539..b49f5b7a2 100644
--- a/sci-biology/plinkseq/plinkseq-0.10.ebuild
+++ b/sci-biology/plinkseq/plinkseq-0.10.ebuild
@@ -28,6 +28,7 @@ src_prepare(){
sed -e "s/gcc/$(tc-getCC)/g;s/g++/$(tc-getCXX)/g;s/-O3/${CFLAGS}/g" -i config_defs.Makefile || die
sed -e "s/= -static/=/g" -i config_defs.Makefile || die
rm -rf sources/ext/protobuf-* || die
+ rm sources/ext/protobuf sources/ext/sources/include/google || die
rm -rf sources/mongoose || die
sed -e 's@^all:.*@all: # skipping compilation of bundled dev-libs/protobuf@' -i sources/ext/Makefile || die
# TODO: fix also sources/ext/sources/include/DUMMY/include/google/protobuf/compiler/plugin.proto causing:
diff --git a/sci-biology/plinkseq/plinkseq-9999.ebuild b/sci-biology/plinkseq/plinkseq-9999.ebuild
index 939a2b821..c17fb396c 100644
--- a/sci-biology/plinkseq/plinkseq-9999.ebuild
+++ b/sci-biology/plinkseq/plinkseq-9999.ebuild
@@ -29,6 +29,7 @@ src_prepare(){
sed -e "s/gcc/$(tc-getCC)/g;s/g++/$(tc-getCXX)/g;s/-O3/${CFLAGS}/g" -i config_defs.Makefile || die
sed -e "s/= -static/=/g" -i config_defs.Makefile || die
rm -rf sources/ext/protobuf-* || die
+ rm sources/ext/protobuf sources/ext/sources/include/google || die
rm -rf sources/mongoose || die
sed -e 's@^all:.*@all: # skipping compilation of bundled dev-libs/protobuf@' -i sources/ext/Makefile || die
find . -name \*.proto | while read f; do \