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authorJustin Lecher <jlec@gentoo.org>2015-01-10 14:44:36 +0100
committerJustin Lecher <jlec@gentoo.org>2015-01-10 14:44:36 +0100
commit6396d9dcc78b362596fc1ed13b8365589b3a6316 (patch)
treeb2dd2567e15da1460ce7f3d4a21eb6a6048cc748 /sci-biology
parentsci-biology/blue: Fix license (diff)
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sci-biology/est2assembly: Bump EAPI; drop KEYWORDS from live ebuild; fix deps
Package-Manager: portage-2.2.15
Diffstat (limited to 'sci-biology')
-rw-r--r--sci-biology/est2assembly/ChangeLog8
-rw-r--r--sci-biology/est2assembly/est2assembly-1.08.ebuild26
-rw-r--r--sci-biology/est2assembly/est2assembly-9999.ebuild23
3 files changed, 33 insertions, 24 deletions
diff --git a/sci-biology/est2assembly/ChangeLog b/sci-biology/est2assembly/ChangeLog
new file mode 100644
index 000000000..902484828
--- /dev/null
+++ b/sci-biology/est2assembly/ChangeLog
@@ -0,0 +1,8 @@
+# ChangeLog for sci-biology/est2assembly
+# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2
+# $Header: $
+
+ 10 Jan 2015; Justin Lecher <jlec@gentoo.org> est2assembly-1.08.ebuild,
+ est2assembly-9999.ebuild:
+ Bump EAPI; drop KEYWORDS from live ebuild; fix deps
+
diff --git a/sci-biology/est2assembly/est2assembly-1.08.ebuild b/sci-biology/est2assembly/est2assembly-1.08.ebuild
index 72fcd5d31..dcbcfb5e8 100644
--- a/sci-biology/est2assembly/est2assembly-1.08.ebuild
+++ b/sci-biology/est2assembly/est2assembly-1.08.ebuild
@@ -1,26 +1,26 @@
-# Copyright 1999-2011 Gentoo Foundation
+# Copyright 1999-2015 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
# $Header: $
-EAPI=3
+EAPI=5
DESCRIPTION="EST assembly and annotation pipeline for chado/gbrowse2 display"
HOMEPAGE="http://code.google.com/p/est2assembly/"
SRC_URI="http://est2assembly.googlecode.com/files/est2assembly_1.08.tar.gz"
-LICENSE="GPL-v3"
+LICENSE="GPL-3"
SLOT="0"
KEYWORDS="~amd64 ~x86"
IUSE=""
-DEPEND="dev-lang/perl
- app-portage/g-cpan
- perl-gcpan/Time-Progress
- sci-biology/fasta
- sci-biology/ssaha2
- sci-biology/mira
- sci-biology/emboss
- sci-biology/bioperl
- app-arch/pbzip2"
+DEPEND="
+ app-arch/pbzip2
+ app-portage/g-cpan
+ dev-lang/perl
+ dev-perl/Time-Progress
+ sci-biology/fasta
+ sci-biology/ssaha2-bin
+ sci-biology/mira
+ sci-biology/emboss
+ sci-biology/bioperl"
RDEPEND="${DEPEND}"
-
diff --git a/sci-biology/est2assembly/est2assembly-9999.ebuild b/sci-biology/est2assembly/est2assembly-9999.ebuild
index 11284c544..c1c58a2c1 100644
--- a/sci-biology/est2assembly/est2assembly-9999.ebuild
+++ b/sci-biology/est2assembly/est2assembly-9999.ebuild
@@ -1,10 +1,10 @@
-# Copyright 1999-2014 Gentoo Foundation
+# Copyright 1999-2015 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
# $Header: $
EAPI=5
-PYTHON_COMPAT=( python{2_6,2_7} )
+PYTHON_COMPAT=( python2_7 )
inherit eutils distutils-r1
@@ -16,7 +16,7 @@ ESVN_REPO_URI="http://est2assembly.googlecode.com/svn/trunk"
if [ "$PV" == "9999" ]; then
ESVN_REPO_URI="http://est2assembly.googlecode.com/svn/trunk"
- KEYWORDS="~amd64 ~x86"
+ KEYWORDS=""
else
SRC_URI="http://est2assembly.googlecode.com/files/est2assembly_"${PV}".tar.gz"
KEYWORDS="~amd64 ~x86"
@@ -30,14 +30,15 @@ IUSE=""
# annot8r http://nematodes.org/bioinformatics/annot8r/index.shtml and http://nematodes.org/bioinformatics/Annot8r_physprop/
# prot4EST http://nematodes.org/bioinformatics/prot4EST/
-DEPEND="dev-lang/perl
- dev-perl/Time-Progress
- sci-biology/fasta
- sci-biology/ssaha2-bin
- sci-biology/mira
- sci-biology/emboss
- sci-biology/bioperl
- app-arch/pbzip2"
+DEPEND="
+ app-arch/pbzip2
+ dev-lang/perl
+ dev-perl/Time-Progress
+ sci-biology/fasta
+ sci-biology/ssaha2-bin
+ sci-biology/mira
+ sci-biology/emboss
+ sci-biology/bioperl"
RDEPEND="${DEPEND}"
# more install tricks in "${S}"/install.pl