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| author |   Horea Christian <chr@chymera.eu> | 2020-09-27 03:33:55 -0400 |
|---|---|---|
| committer | Horea Christian <chr@chymera.eu> | 2020-09-27 03:33:55 -0400 |
| commit | 6fdee212269c999a4ec6ceb020115f6b9959d20f (patch) | |
| tree | eda9702c3fe91bb7c2484428b1dba3c9f342043c /sci-biology | |
| parent | sci-biology/pybedtools: PYTHON_COMPAT update and actually install files (diff) | |
| download | sci-6fdee212269c999a4ec6ceb020115f6b9959d20f.tar.gz sci-6fdee212269c999a4ec6ceb020115f6b9959d20f.tar.bz2 sci-6fdee212269c999a4ec6ceb020115f6b9959d20f.zip | |
sci-biology/gffutils: version bump 0.10.1, test and PYTHON_COMPAT fix
Package-Manager: Portage-3.0.8, Repoman-3.0.1
Signed-off-by: Horea Christian <chr@chymera.eu>
Diffstat (limited to 'sci-biology')
| -rw-r--r-- | sci-biology/gffutils/Manifest | 1 | ||||
| -rw-r--r-- | sci-biology/gffutils/gffutils-0.10.1.ebuild | 40 | ||||
| -rw-r--r-- | sci-biology/gffutils/gffutils-0.8.7.1.ebuild | 6 |
3 files changed, 44 insertions, 3 deletions
diff --git a/sci-biology/gffutils/Manifest b/sci-biology/gffutils/Manifest index dbac0ec54..a697f0784 100644 --- a/sci-biology/gffutils/Manifest +++ b/sci-biology/gffutils/Manifest @@ -1 +1,2 @@ +DIST gffutils-0.10.1.tar.gz 1636628 BLAKE2B ca539bdcf2a2e199d264194e23c3d1b52e1f4b141d2a43a1346024c008020ff531d5b642c63bd4c3a34cd97de2a399975eea430163f16218f5a1d671521e69b6 SHA512 21f56e013abdf1368756db97afcea0be6d0edc56cb0636e9e796603959570c7c3ba0cecf1bf90a69ab7afd2c4c831d3d42b92960a8c34f9b645be7e47d42190a DIST gffutils-0.8.7.1.tar.gz 1541112 BLAKE2B 65676cf0b910ad0fee478315409dba808a13d11922d0ab254694939ebd01f10b62c2237ae517d941999c6cf9bcb08d903bde8b9055bcf7a67116e14439ec4cca SHA512 4739dd402963d402f34a5e3da9cca7ba9586dcbbe62efbad89bf85c5dbb0feff0e260eea20563340911756e6817289c1556c261ef973a61f4e66e50efdfc8aa8 diff --git a/sci-biology/gffutils/gffutils-0.10.1.ebuild b/sci-biology/gffutils/gffutils-0.10.1.ebuild new file mode 100644 index 000000000..f33541347 --- /dev/null +++ b/sci-biology/gffutils/gffutils-0.10.1.ebuild @@ -0,0 +1,40 @@ +# Copyright 1999-2020 Gentoo Authors +# Distributed under the terms of the GNU General Public License v2 + +EAPI=7 + +PYTHON_COMPAT=( python3_{6..9} ) + +inherit distutils-r1 + +DESCRIPTION="GFF and GTF file manipulation and interconversion" +HOMEPAGE="https://pythonhosted.org/gffutils/" +SRC_URI="https://github.com/daler/gffutils/archive/v${PV}.tar.gz -> ${P}.tar.gz" + +LICENSE="MIT" +SLOT="0" +KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux" +IUSE="" + +RDEPEND=" + dev-python/simplejson[${PYTHON_USEDEP}] + dev-python/argh[${PYTHON_USEDEP}] + dev-python/argcomplete[${PYTHON_USEDEP}] + sci-biology/biopython[${PYTHON_USEDEP}] + sci-biology/pybedtools[${PYTHON_USEDEP}] + sci-biology/pyfaidx[${PYTHON_USEDEP}] +" +DEPEND="${RDEPEND}" + +python_prepare_all() { + if use test; then + sed -i -e "s:/tmp/gffutils-test:${T}:g" gffutils/test/test.py || die + fi + distutils-r1_python_prepare_all +} + +distutils_enable_tests nose +python_test() { + distutils_install_for_testing + nosetests -v -x --with-doctest -a '!slow' || die +} diff --git a/sci-biology/gffutils/gffutils-0.8.7.1.ebuild b/sci-biology/gffutils/gffutils-0.8.7.1.ebuild index 787a5668a..333716f7a 100644 --- a/sci-biology/gffutils/gffutils-0.8.7.1.ebuild +++ b/sci-biology/gffutils/gffutils-0.8.7.1.ebuild @@ -1,9 +1,9 @@ -# Copyright 1999-2017 Gentoo Foundation +# Copyright 1999-2020 Gentoo Authors # Distributed under the terms of the GNU General Public License v2 -EAPI=5 +EAPI=7 -PYTHON_COMPAT=( python2_7 ) +PYTHON_COMPAT=( python3_{6..9} ) inherit distutils-r1 |