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| author |   Horea Christian <chr@chymera.eu> | 2020-09-28 01:58:42 -0400 |
|---|---|---|
| committer | Horea Christian <chr@chymera.eu> | 2020-09-28 01:58:42 -0400 |
| commit | 7b77093ccf69b45396b77e47661ef62d9cabfdb9 (patch) | |
| tree | 0762ce72f1fca773a5fcdf1c6fe674c2d27d0da9 /sci-biology | |
| parent | sci-libs/oasa: drop dead package (diff) | |
| download | sci-7b77093ccf69b45396b77e47661ef62d9cabfdb9.tar.gz sci-7b77093ccf69b45396b77e47661ef62d9cabfdb9.tar.bz2 sci-7b77093ccf69b45396b77e47661ef62d9cabfdb9.zip | |
sci-biology/biobambam: removed discontinued package
Package-Manager: Portage-3.0.8, Repoman-3.0.1
Signed-off-by: Horea Christian <chr@chymera.eu>
Diffstat (limited to 'sci-biology')
| -rw-r--r-- | sci-biology/biobambam/Manifest | 1 | ||||
| -rw-r--r-- | sci-biology/biobambam/biobambam-0.0.183.ebuild | 20 | ||||
| -rw-r--r-- | sci-biology/biobambam/metadata.xml | 21 |
3 files changed, 0 insertions, 42 deletions
diff --git a/sci-biology/biobambam/Manifest b/sci-biology/biobambam/Manifest deleted file mode 100644 index 562f6adcb..000000000 --- a/sci-biology/biobambam/Manifest +++ /dev/null @@ -1 +0,0 @@ -DIST 0.0.183-release-20141208165400.tar.gz 1100088 BLAKE2B f43e25c51c773b4ba5c086761758ddabd1b021efa51b0230fb60360845f4ed34f48004e9da0cec5d2a36586ca56f68732620bab3eb4d76c80a420fef867a1396 SHA512 64e05517754156c48116672e18d21ae59146a9544ae7bf3df115e6a6b475ec24d62043ac4e54417ce064d6e8acddba75698944865c6b407f64d40ff7e5dafa3c diff --git a/sci-biology/biobambam/biobambam-0.0.183.ebuild b/sci-biology/biobambam/biobambam-0.0.183.ebuild deleted file mode 100644 index 17a247d60..000000000 --- a/sci-biology/biobambam/biobambam-0.0.183.ebuild +++ /dev/null @@ -1,20 +0,0 @@ -# Copyright 1999-2014 Gentoo Foundation -# Distributed under the terms of the GNU General Public License v2 - -EAPI=5 - -FULLVER=${PV}-release-20141208165400 - -DESCRIPTION="Tools for bam file processing" -HOMEPAGE="https://github.com/gt1/biobambam" -SRC_URI="https://github.com/gt1/biobambam/archive/${FULLVER}.tar.gz" - -LICENSE="GPL-3" -SLOT="0" -KEYWORDS="~x86" -IUSE="" - -DEPEND="sci-libs/libmaus" -RDEPEND="${DEPEND}" - -S="${WORKDIR}"/${PN}-${FULLVER} diff --git a/sci-biology/biobambam/metadata.xml b/sci-biology/biobambam/metadata.xml deleted file mode 100644 index 782a697ab..000000000 --- a/sci-biology/biobambam/metadata.xml +++ /dev/null @@ -1,21 +0,0 @@ -<?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> -<pkgmetadata> - <maintainer type="project"> - <email>sci-biology@gentoo.org</email> - <name>Gentoo Biology Project</name> - </maintainer> - <longdescription lang="en"> -This package contains some tools for processing BAM files including - -bamcollate2: reads BAM and writes BAM reordered such that alignment or collated by query name -bammarkduplicates: reads BAM and writes BAM with duplicate alignments marked using the BAM flags field -bammaskflags: reads BAM and writes BAM while masking (removing) bits from the flags column -bamrecompress: reads BAM and writes BAM with a defined compression setting. This tool is capable of multi-threading. -bamsort: reads BAM and writes BAM resorted by coordinates or query name -bamtofastq: reads BAM and writes FastQ; output can be collated or uncollated by query name -</longdescription> - <upstream> - <remote-id type="github">gt1/biobambam</remote-id> - </upstream> -</pkgmetadata> |