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| author |   Andrew Ammerlaan <andrewammerlaan@gentoo.org> | 2023-05-02 14:08:24 +0200 |
|---|---|---|
| committer | Andrew Ammerlaan <andrewammerlaan@gentoo.org> | 2023-05-02 14:15:10 +0200 |
| commit | 7f9384c065b99e3a858415a8a838438d9f70bcdf (patch) | |
| tree | db4e970583db154c9177e121b01733dceef6a8f9 /sci-biology | |
| parent | sci-biology/kat: treeclean (diff) | |
| download | sci-7f9384c065b99e3a858415a8a838438d9f70bcdf.tar.gz sci-7f9384c065b99e3a858415a8a838438d9f70bcdf.tar.bz2 sci-7f9384c065b99e3a858415a8a838438d9f70bcdf.zip | |
sci-biology/khmer: treeclean
Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
Diffstat (limited to 'sci-biology')
| -rw-r--r-- | sci-biology/khmer/Manifest | 1 | ||||
| -rw-r--r-- | sci-biology/khmer/khmer-2.1.1.ebuild | 34 | ||||
| -rw-r--r-- | sci-biology/khmer/metadata.xml | 16 |
3 files changed, 0 insertions, 51 deletions
diff --git a/sci-biology/khmer/Manifest b/sci-biology/khmer/Manifest deleted file mode 100644 index 18a85fae6..000000000 --- a/sci-biology/khmer/Manifest +++ /dev/null @@ -1 +0,0 @@ -DIST khmer-2.1.1.tar.gz 8507798 BLAKE2B e4db949736c6d01f0878140d0d7be0a91916532bc6709845eeb8d458e145349c868bc381c35ae007716b3c9b7c7a9ca5171965cf187c838a59033b1b969bf177 SHA512 aca35d2b12812470afb271c17eb521e9d80ecaefedde60312ed676bbf73a8662a581e722ebaa4bee6572adc65021a4bc010adbfb84d5393b11c0552139614914 diff --git a/sci-biology/khmer/khmer-2.1.1.ebuild b/sci-biology/khmer/khmer-2.1.1.ebuild deleted file mode 100644 index 11c4231e8..000000000 --- a/sci-biology/khmer/khmer-2.1.1.ebuild +++ /dev/null @@ -1,34 +0,0 @@ -# Copyright 1999-2020 Gentoo Authors -# Distributed under the terms of the GNU General Public License v2 - -EAPI=7 - -PYTHON_COMPAT=( python3_{7,8,9} ) - -inherit distutils-r1 - -DESCRIPTION="In-memory K-mer counting in DNA/RNA/protein sequences" -HOMEPAGE="https://github.com/dib-lab/khmer" -SRC_URI="mirror://pypi/${PN:0:1}/${PN}/${P}.tar.gz" - -LICENSE="BSD" -SLOT="0" -KEYWORDS="~amd64 ~x86" - -# ToDo: Fix this: -# ModuleNotFoundError: No module named 'khmer._khmer' -# even happens with --install option for enable_tests -RESTRICT="test" - -RDEPEND=" - sci-biology/screed[${PYTHON_USEDEP}] - dev-python/bz2file[${PYTHON_USEDEP}] -" - -distutils_enable_tests pytest - -python_prepare_all() { - # do not depend on pytest-runner - sed -i "/pytest-runner/d" setup.py || die - distutils-r1_python_prepare_all -} diff --git a/sci-biology/khmer/metadata.xml b/sci-biology/khmer/metadata.xml deleted file mode 100644 index 91ed395d8..000000000 --- a/sci-biology/khmer/metadata.xml +++ /dev/null @@ -1,16 +0,0 @@ -<?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> -<pkgmetadata> - <maintainer type="person"> - <email>mmokrejs@fold.natur.cuni.cz</email> - <name>Martin Mokrejs</name> - </maintainer> - <maintainer type="project"> - <email>sci-biology@gentoo.org</email> - <name>Gentoo Biology Project</name> - </maintainer> - <upstream> - <remote-id type="github">ged-lab/khmer</remote-id> - <remote-id type="pypi">khmer</remote-id> - </upstream> -</pkgmetadata> |