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| author |   Andrew Ammerlaan <andrewammerlaan@riseup.net> | 2021-03-06 17:09:45 +0100 |
|---|---|---|
| committer | Andrew Ammerlaan <andrewammerlaan@riseup.net> | 2021-03-06 17:09:45 +0100 |
| commit | 85ea7cd26bde63d5c0b0157bb2f10214006aec89 (patch) | |
| tree | 50895e81044ba9a8a67876aac0b4849d26d571e3 /sci-biology | |
| parent | sci-biology/vcflib: EAPI bump, version bump (diff) | |
| download | sci-85ea7cd26bde63d5c0b0157bb2f10214006aec89.tar.gz sci-85ea7cd26bde63d5c0b0157bb2f10214006aec89.tar.bz2 sci-85ea7cd26bde63d5c0b0157bb2f10214006aec89.zip | |
sci-biology/verifyBamID: EAPI bump, bump libStatGen version
fixes build failure
Package-Manager: Portage-3.0.16, Repoman-3.0.2
Signed-off-by: Andrew Ammerlaan <andrewammerlaan@riseup.net>
Diffstat (limited to 'sci-biology')
| -rw-r--r-- | sci-biology/verifyBamID/Manifest | 2 | ||||
| -rw-r--r-- | sci-biology/verifyBamID/verifyBamID-1.1.3.ebuild | 21 |
2 files changed, 11 insertions, 12 deletions
diff --git a/sci-biology/verifyBamID/Manifest b/sci-biology/verifyBamID/Manifest index 0dc22078a..404281bce 100644 --- a/sci-biology/verifyBamID/Manifest +++ b/sci-biology/verifyBamID/Manifest @@ -1,2 +1,2 @@ -DIST libStatGen-1.0.13.tar.gz 558682 BLAKE2B 8e9308c698110e2e3a735e14171954c2bf1e7ac7f05d6c86072389aa697246d69033a0844f4bfccce1dc74623e847c551e388e19b00469274d5ef945e080811c SHA512 bcce3dd2f343e5941857d5bca0f2960d69b3e1083da6312e018a96bb92fb8dbc91ac511e062b024720c45508aa805d3f4f6511f60201438176a898ab789e746f +DIST libStatGen-1.0.15.tar.gz 560812 BLAKE2B 332581c45fc45f915d8b63156e10504d4146b1b8bc009eab4a781046ca72f5cea718be634060ab5796904470902dcb525f5509042d7f2b872b2d6590e8f13a64 SHA512 1f28c9c1f2ce09ea924ec4d784192cf7588554773fbf5b365bb9fa775c73cda316883dc3165b7e116adc1c630366b6c38a090db4d2410035dad075fa05b89d3a DIST verifyBamID-1.1.3.tar.gz 68447 BLAKE2B 411511edf45dd6ddd9f882f894a133fb7734c5bbab0a6b34e3b20849c25719b2566de93a4e9bc2dc119782bfe0089a772baeb53b52fad237d7c89ad98991b897 SHA512 1b39b1f7b8a40f3c6c08af5a4ad24b8aebe5dc0dc3b1bf4401632fa6cac56dc8d5e17c18f142caa5cc00c7c654f43737b2550149f4c4416166f439688634235e diff --git a/sci-biology/verifyBamID/verifyBamID-1.1.3.ebuild b/sci-biology/verifyBamID/verifyBamID-1.1.3.ebuild index 040816a76..2a6759c54 100644 --- a/sci-biology/verifyBamID/verifyBamID-1.1.3.ebuild +++ b/sci-biology/verifyBamID/verifyBamID-1.1.3.ebuild @@ -1,19 +1,18 @@ -# Copyright 1999-2017 Gentoo Foundation +# Copyright 1999-2021 Gentoo Authors # Distributed under the terms of the GNU General Public License v2 -EAPI=6 +EAPI=7 inherit toolchain-funcs DESCRIPTION="Verify sample identity/mix and genotype concordance" HOMEPAGE="http://genome.sph.umich.edu/wiki/VerifyBamID" -SRC_URI="https://github.com/statgen/verifyBamID/archive/v1.1.3.tar.gz -> ${P}.tar.gz - https://github.com/statgen/libStatGen/archive/v1.0.13.tar.gz -> libStatGen-1.0.13.tar.gz" +SRC_URI="https://github.com/statgen/verifyBamID/archive/v${PV}.tar.gz -> ${P}.tar.gz + https://github.com/statgen/libStatGen/archive/v1.0.15.tar.gz -> libStatGen-1.0.15.tar.gz" LICENSE="GPL-3+" SLOT="0" KEYWORDS="~amd64 ~x86" -IUSE="" # DEPEND="sci-libs/libStatGen" # TODO: currently it uses its own bundled copy DEPEND="" @@ -21,18 +20,18 @@ RDEPEND="${DEPEND}" src_prepare(){ # unpack ./libStatGen-1.0.13/ contents - gzip -dc "${DISTDIR}"/libStatGen-1.0.13.tar.gz | tar xf - || die - ln -s libStatGen-1.0.13 libStatGen || die + gzip -dc "${DISTDIR}"/libStatGen-1.0.15.tar.gz | tar xf - || die + ln -s libStatGen-1.0.15 libStatGen || die cd "${WORKDIR}" || die - ln -s libStatGen-1.0.13 libStatGen || die + ln -s libStatGen-1.0.15 libStatGen || die sed -e 's/-Werror//' -i verifyBamID-1.1.3/src/Makefile || die - sed -e 's/-Werror//' -i verifyBamID-1.1.3/libStatGen-1.0.13/general/Makefile || die - eapply_user + sed -e 's/-Werror//' -i verifyBamID-1.1.3/libStatGen-1.0.15/general/Makefile || die + default } src_compile(){ # LIB_PATH_GENERAL="${EPREFIX}"/usr/"$(get_libdir)" emake - LIB_PATH_GENERAL="../libStatGen-1.0.13" emake USER_WARNINGS=' ' + LIB_PATH_GENERAL="../libStatGen-1.0.15" emake USER_WARNINGS=' ' } src_install(){ |