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| author |   Martin Mokrejš <mmokrejs@fold.natur.cuni.cz> | 2016-03-23 20:00:16 +0100 |
|---|---|---|
| committer | Martin Mokrejš <mmokrejs@fold.natur.cuni.cz> | 2016-03-23 20:00:16 +0100 |
| commit | 91ae72dccfc97eb347ae0e04c9530d1b76d1acbe (patch) | |
| tree | 58d3c49e6ddc117998539fcea0b8ee95473e43cd /sci-biology | |
| parent | sci-biology/consed-29: add also DEPEND on >=samtools-0.1.18 (diff) | |
| download | sci-91ae72dccfc97eb347ae0e04c9530d1b76d1acbe.tar.gz sci-91ae72dccfc97eb347ae0e04c9530d1b76d1acbe.tar.bz2 sci-91ae72dccfc97eb347ae0e04c9530d1b76d1acbe.zip | |
sci-biology/fgap: new package which needs either octave or matlab runtime
Package-Manager: portage-2.2.26
Diffstat (limited to 'sci-biology')
| -rw-r--r-- | sci-biology/fgap/Manifest | 1 | ||||
| -rw-r--r-- | sci-biology/fgap/fgap-1.8.1.ebuild | 26 | ||||
| -rw-r--r-- | sci-biology/fgap/metadata.xml | 12 |
3 files changed, 39 insertions, 0 deletions
diff --git a/sci-biology/fgap/Manifest b/sci-biology/fgap/Manifest new file mode 100644 index 000000000..c6e88321a --- /dev/null +++ b/sci-biology/fgap/Manifest @@ -0,0 +1 @@ +DIST fgap.m 66256 SHA256 9fdfeccb28ed8461696e05e5cdea32ee63eaead9f0d9c81cf8fe0dc6e59683b8 SHA512 05b0d46eb5a9b3a34e16c045966c58f52bdf09ee2f8c62198338b2d57835815a2ac034b596d6c180733b91edcc012fb77852c8bc0523174251a2c1b3c71b1e27 WHIRLPOOL 623df6b1d2b540fac5d5303e8c08d27128d44dbd678a4e85d49b5304ffde008562c3d4df1996f30d36a4da77f28a09f0c0ae47ee945bb3000fee7f1ffac70921 diff --git a/sci-biology/fgap/fgap-1.8.1.ebuild b/sci-biology/fgap/fgap-1.8.1.ebuild new file mode 100644 index 000000000..65430e9a7 --- /dev/null +++ b/sci-biology/fgap/fgap-1.8.1.ebuild @@ -0,0 +1,26 @@ +# Copyright 1999-2016 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Header: $ + +EAPI=5 + +DESCRIPTION="Tool to close gaps in de novo assembled contigs or scaffolds" +HOMEPAGE="http://www.bioinfo.ufpr.br/fgap" +SRC_URI="https://sourceforge.net/projects/fgap/files/fgap.m" +# http://bmcresnotes.biomedcentral.com/articles/10.1186/1756-0500-7-371 + +LICENSE="MIT" +SLOT="0" +KEYWORDS="" +IUSE="" + +# Matlab (R2012a) or Octave (3.6.2) +# +# Source code (Octave/Matlab): https://sourceforge.net/projects/fgap/files/fgap.m + +# MATLAB Component Runtime v7.17: https://sourceforge.net/projects/fgap/files/MCR_LINUX64b.tar.gz +# http://www.mathworks.com/products/compiler/mcr/index.html +DEPEND="" +RDEPEND="${DEPEND} + >=sci-biology/ncbi-tools+-2.2.28 + >=sci-mathematics/octave-3.6.2" diff --git a/sci-biology/fgap/metadata.xml b/sci-biology/fgap/metadata.xml new file mode 100644 index 000000000..f68a1b6fa --- /dev/null +++ b/sci-biology/fgap/metadata.xml @@ -0,0 +1,12 @@ +<?xml version="1.0" encoding="UTF-8"?> +<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<pkgmetadata> + <maintainer type="person"> + <email>mmokrejs@fold.natur.cuni.cz</email> + <name>Martin Mokrejs</name> + </maintainer> + <maintainer type="project"> + <email>sci-biology@gentoo.org</email> + <name>Gentoo Biology Project</name> + </maintainer> +</pkgmetadata> |