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| author |   Martin Mokrejs <mmokrejs@fold.natur.cuni.cz> | 2018-04-21 13:39:30 +0200 |
|---|---|---|
| committer | Martin Mokrejs <mmokrejs@fold.natur.cuni.cz> | 2018-04-21 13:39:30 +0200 |
| commit | 9b2792faf3aac9829d3c30dc8ea5c5ec92fc9a8f (patch) | |
| tree | 1f75c693e75e829e42d1bc8fb789b16ace105f15 /sci-biology | |
| parent | sci-biology/act-bin: raise require java version (diff) | |
| download | sci-9b2792faf3aac9829d3c30dc8ea5c5ec92fc9a8f.tar.gz sci-9b2792faf3aac9829d3c30dc8ea5c5ec92fc9a8f.tar.bz2 sci-9b2792faf3aac9829d3c30dc8ea5c5ec92fc9a8f.zip | |
sci-biology/tigmint: new package
It is not yet enabled because an install procedure is missing.
Bug: https://github.com/bcgsc/tigmint/issues/10
Package-Manager: Portage-2.3.28, Repoman-2.3.9
Diffstat (limited to 'sci-biology')
| -rw-r--r-- | sci-biology/tigmint/Manifest | 1 | ||||
| -rw-r--r-- | sci-biology/tigmint/metadata.xml | 12 | ||||
| -rw-r--r-- | sci-biology/tigmint/tigmint-1.1.0.ebuild | 31 |
3 files changed, 44 insertions, 0 deletions
diff --git a/sci-biology/tigmint/Manifest b/sci-biology/tigmint/Manifest new file mode 100644 index 000000000..5032ee1eb --- /dev/null +++ b/sci-biology/tigmint/Manifest @@ -0,0 +1 @@ +DIST tigmint-1.1.0.tar.gz 330542 BLAKE2B 01159031c132b0dbf5089f3e31970362d816443b9a29aa7d664f6ec97fe126c3afbc4fe4765a27554726c0b73816843b1e017722d45ec43f61eed7e82050f110 SHA512 dc14adcf2bde135770aa9beb99d750770e4ea891d4eaa1ad607431c321c414f66ca7befc246647cc98ad23cdff008604b254fda429fcabf90b173554ea41a81b diff --git a/sci-biology/tigmint/metadata.xml b/sci-biology/tigmint/metadata.xml new file mode 100644 index 000000000..138cb7705 --- /dev/null +++ b/sci-biology/tigmint/metadata.xml @@ -0,0 +1,12 @@ +<?xml version="1.0" encoding="UTF-8"?> +<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<pkgmetadata> + <maintainer type="person"> + <email>mmokrejs@fold.natur.cuni.cz</email> + <name>Martin Mokrejs</name> + </maintainer> + <maintainer type="project"> + <email>sci-biology@gentoo.org</email> + <name>Gentoo Biology Project</name> + </maintainer> +</pkgmetadata> diff --git a/sci-biology/tigmint/tigmint-1.1.0.ebuild b/sci-biology/tigmint/tigmint-1.1.0.ebuild new file mode 100644 index 000000000..66a1f3460 --- /dev/null +++ b/sci-biology/tigmint/tigmint-1.1.0.ebuild @@ -0,0 +1,31 @@ +# Copyright 1999-2018 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 + +EAPI=6 + +DESCRIPTION="Correct misassemblies using linked reads from 10x Genomics Chromium" +HOMEPAGE="https://github.com/bcgsc/tigmint" +SRC_URI="https://github.com/bcgsc/tigmint/archive/1.1.0.tar.gz -> ${P}.tar.gz" + +LICENSE="GPL-3" +SLOT="0" +KEYWORDS="" +IUSE="" + +DEPEND=" + dev-python/intervaltree + sci-biology/pybedtools + sci-biology/pysam + dev-python/statistics" +RDEPEND="${DEPEND} + sci-biology/bwa + sci-biology/bedtools + sci-biology/samtools:0 + sci-biology/seqtools + dev-util/makefile2graph + media-gfx/graphviz + dev-vcs/git + dev-libs/libxslt + net-misc/curl" +# for full features also sci-biology/abyss should be installed but it addition here +# would create circular dependency |