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4 files changed, 0 insertions, 102 deletions

diff --git a/sci-biology/ucsc-genome-browser/ChangeLog b/sci-biology/ucsc-genome-browser/ChangeLog
deleted file mode 100644
index aca31855f..000000000
--- a/sci-biology/ucsc-genome-browser/ChangeLog
+++ /dev/null
@@ -1,7 +0,0 @@
-# ChangeLog for sci-biology/ucsc-genome-browser
-# Copyright 1999-2009 Gentoo Foundation; Distributed under the GPL v2
-# $Header: $
-
-  23 Oct 2009; Andrey Kislyuk <weaver@gentoo.org> ChangeLog:
-  New package, bug 155780. Ebuild written by me and dawe <daweonline@gmail.com>
-
diff --git a/sci-biology/ucsc-genome-browser/Manifest b/sci-biology/ucsc-genome-browser/Manifest
deleted file mode 100644
index 01ebaa964..000000000
--- a/sci-biology/ucsc-genome-browser/Manifest
+++ /dev/null
@@ -1,4 +0,0 @@
-DIST jksrc.v217.zip 118362449 RMD160 65ca4e0caefaf42cdf7885e55063216fd69fd8f2 SHA1 3df81e7dfd4fd56a6afac69590f9ecb53e9174c5 SHA256 53e95bfcc68644cc20e0d3707161044b0d231c94199e4b0702b91ae72db21c20
-EBUILD ucsc-genome-browser-217.ebuild 2467 RMD160 9f0579a467c5cc39c81d212684bd55b56f27e1ba SHA1 f09e479659bc6b9b5b6f918340f3fe6bb8395da2 SHA256 4abc71324506de21b851a801d7246832ab2b8c8c15716445f23f267b01cf9993
-MISC ChangeLog 274 RMD160 8999c8189cd55c5964ffcbe258482af9cefc952b SHA1 9abdde17b399b2cfb4a25471ad7b03e230e286a4 SHA256 193a442df34a33a92337da94b7ae64ee47b11a3c03f1a0bc04f776d6abe1c281
-MISC metadata.xml 259 RMD160 d9d81b67d635fabd81aef8ae0edf971211ae9072 SHA1 8e32f751c67ff891fa35405a2cf6fb33752d6eb1 SHA256 541c3fbcf299d9a8ccf4132ee61f9e53a5d737cefdaa6fdc77764d8d4c7f3110
diff --git a/sci-biology/ucsc-genome-browser/metadata.xml b/sci-biology/ucsc-genome-browser/metadata.xml
deleted file mode 100644
index 3302123e5..000000000
--- a/sci-biology/ucsc-genome-browser/metadata.xml
+++ /dev/null
@@ -1,9 +0,0 @@
-<?xml version="1.0" encoding="UTF-8"?>
-<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
-<pkgmetadata>
-	<maintainer>
-		<email>weaver@gentoo.org</email>
-		<name>Andrey Kislyuk</name>
-	</maintainer>
-	<herd>sci-biology</herd>
-</pkgmetadata>
diff --git a/sci-biology/ucsc-genome-browser/ucsc-genome-browser-217.ebuild b/sci-biology/ucsc-genome-browser/ucsc-genome-browser-217.ebuild
deleted file mode 100644
index 5092aed70..000000000
--- a/sci-biology/ucsc-genome-browser/ucsc-genome-browser-217.ebuild
+++ /dev/null
@@ -1,82 +0,0 @@
-# Copyright 1999-2009 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Header: $
-
-EAPI="2"
-
-inherit toolchain-funcs flag-o-matic webapp
-
-DESCRIPTION="The UCSC genome browser suite, also known as Jim Kent's library and GoldenPath"
-HOMEPAGE="http://genome.ucsc.edu"
-SRC_URI="http://hgdownload.cse.ucsc.edu/admin/jksrc.v${PV}.zip"
-
-LICENSE="blat"
-# webapp ebuilds do not set SLOT
-KEYWORDS="~amd64 ~x86"
-IUSE="server"
-
-DEPEND="app-arch/unzip
-	virtual/mysql
-	server? ( virtual/httpd-cgi )" # TODO: test with other webservers
-RDEPEND="${DEPEND}"
-
-S="${WORKDIR}/kent"
-
-src_prepare() {
-	use server && webapp_src_preinst
-	sed -i -e 's/-Werror//' \
-		-e "s/CC=gcc/CC=$(tc-getCC) ${CFLAGS}/" \
-		src/inc/common.mk || die
-	find -name makefile -or -name cgi_build_rules.mk \
-		| xargs sed -i -e 's/-${USER}//g' -e 's/-$(USER)//g' || die
-}
-
-src_compile() {
-	export MACHTYPE=${MACHTYPE/-*/} \
-		BINDIR="${WORKDIR}/destdir/opt/${PN}/bin" \
-		SCRIPTS="${WORKDIR}/destdir/opt/${PN}/cluster/scripts" \
-		ENCODE_PIPELINE_BIN="${WORKDIR}/destdir/opt/${PN}/cluster/data/encode/pipeline/bin" \
-		PATH="${BINDIR}:${PATH}" \
-		STRIP="echo 'skipping strip' "
-
-	export MYSQLLIBS="none" MYSQLINC="none" DOCUMENTROOT="none" CGI_BIN="none"
-
-	# use mysql &&
-	export MYSQLLIBS="${ROOT}usr/lib/mysql/libmysqlclient.a -lz -lssl" \
-		MYSQLINC="${ROOT}usr/include/mysql"
-
-	use server && export DOCUMENTROOT="${WORKDIR}/destdir/${MY_HTDOCSDIR}" \
-		CGI_BIN="${WORKDIR}/destdir/${MY_HTDOCSDIR}/cgi-bin"
-
-	mkdir -p "$BINDIR" "$SCRIPTS" "$ENCODE_PIPELINE_BIN" || die
-	use server && mkdir -p "$CGI_BIN" "$DOCUMENTROOT"
-
-	emake -C src clean || die
-	emake -C src/lib || die
-	emake -C src/jkOwnLib || die
-	emake -C src/utils/stringify || die
-	emake -j1 -C src/hg utils || die
-	emake -j1 -C src utils || die
-	emake -C src blatSuite userApps || die
-	if use server; then
-		emake -j1 -C src/hg || die
-		emake -j1 -C src || die
-	fi
-}
-
-src_install() {
-	cp -a "${WORKDIR}"/destdir/* "${D}" || die
-	# dolib.a src/lib/*.a src/hg/altSplice/lib/x86_64/libSpliceGraph.a
-	echo "PATH=/opt/${PN}/bin" > "${S}/99${PN}"
-	doenvd "${S}/99${PN}"
-	# TODO
-	use server && webapp_postinst_txt en src/product/README.QuickStart
-	use server && webapp_src_install
-
-	insinto "/opt/${PN}/include"
-	doins src/inc/*.h
-	insinto "/usr/share/${PN}"
-	doins -r src/product
-	keepdir "/usr/share/doc/${PF}"
-	find -name 'README*' -or -name '*.doc' | grep -v test | cpio -padv "${D}/usr/share/doc/${PF}" || die
-}