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| author |   Horea Christian <chr@chymera.eu> | 2020-09-13 19:12:53 -0400 |
|---|---|---|
| committer | Horea Christian <chr@chymera.eu> | 2020-09-13 19:12:53 -0400 |
| commit | b118528394ea931b4732e27b266bc38a5d1c0ff1 (patch) | |
| tree | 151ce8f04f98a0a23a249b20b486bf3b987cbe8c /sci-biology | |
| parent | sci-biology/deeptools: QA fix: KEYWORDS and conditional definition (diff) | |
| download | sci-b118528394ea931b4732e27b266bc38a5d1c0ff1.tar.gz sci-b118528394ea931b4732e27b266bc38a5d1c0ff1.tar.bz2 sci-b118528394ea931b4732e27b266bc38a5d1c0ff1.zip | |
sci-biology/gatk: updated license, copyright, and ebuild style
Signed-off-by: Horea Christian <chr@chymera.eu>
Diffstat (limited to 'sci-biology')
| -rw-r--r-- | sci-biology/gatk/gatk-3.8.1.ebuild | 8 | ||||
| -rw-r--r-- | sci-biology/gatk/gatk-9999.ebuild | 13 |
2 files changed, 8 insertions, 13 deletions
diff --git a/sci-biology/gatk/gatk-3.8.1.ebuild b/sci-biology/gatk/gatk-3.8.1.ebuild index f46c1d322..9ad24d86c 100644 --- a/sci-biology/gatk/gatk-3.8.1.ebuild +++ b/sci-biology/gatk/gatk-3.8.1.ebuild @@ -1,4 +1,4 @@ -# Copyright 1999-2018 Gentoo Foundation +# Copyright 1999-2020 Gentoo Authors # Distributed under the terms of the GNU General Public License v2 EAPI=5 @@ -17,19 +17,17 @@ EGIT_COMMIT="41147a655594c2aae6e2cad8462bd1648570b32b" LICENSE="MIT" SLOT="0" -IUSE="" KEYWORDS="~amd64" # 608.21 MiB git download and 134MB "${W}"/.m2 download -COMMON_DEPS="" DEPEND=" >=virtual/jdk-1.6 dev-java/maven-bin:* || ( dev-java/netbeans-java ) dev-java/cofoja - ${COMMON_DEPS}" + " RDEPEND=" >=virtual/jre-1.6 >=sci-biology/SnpEff-2.0.5 - ${COMMON_DEPS}" + " #S="${WORKDIR}/${PN}-${MY_PV}" diff --git a/sci-biology/gatk/gatk-9999.ebuild b/sci-biology/gatk/gatk-9999.ebuild index fc9db8986..70d42cb0a 100644 --- a/sci-biology/gatk/gatk-9999.ebuild +++ b/sci-biology/gatk/gatk-9999.ebuild @@ -1,4 +1,4 @@ -# Copyright 1999-2018 Gentoo Foundation +# Copyright 1999-2020 Gentoo Authors # Distributed under the terms of the GNU General Public License v2 EAPI=5 @@ -14,16 +14,13 @@ EGIT_CLONE_TYPE="mirror" # building outside of git is not possible, # see https://github.com/broadinstitute/picard/issues/605 # -# +# # must run 'git clone https://github.com/broadinstitute/gatk.git gatk' # see https://github.com/broadinstitute/gatk/issues/4687 -LICENSE="BSD-3" # since gatk-4 +LICENSE="BSD" # since gatk-4 SLOT="0" -IUSE="" -KEYWORDS="" # 148.19 MB git download and 134MB "${W}"/.m2 download -COMMON_DEPS="" # gatk-4 needs java-1.8 DEPEND=" >=virtual/jdk-1.8 @@ -31,12 +28,12 @@ DEPEND=" >=dev-vcs/git-lfs-1.1.0 >=dev-java/maven-bin-3.1:* || ( dev-java/netbeans-java ) dev-java/cofoja - ${COMMON_DEPS}" + " RDEPEND=" >=virtual/jre-1.8 >=sci-biology/SnpEff-2.0.5 >=dev-lang/R-3.2.5 - ${COMMON_DEPS}" + " #S="${WORKDIR}/${PN}-${MY_PV}" |