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| author |   Horea Christian <chr@chymera.eu> | 2020-09-27 06:42:30 -0400 |
|---|---|---|
| committer | Horea Christian <chr@chymera.eu> | 2020-09-27 06:42:30 -0400 |
| commit | d6d5fc59399df2b7cf9a4d1b5033248fabc2031b (patch) | |
| tree | 9b4c48c2bdbae17fc2cd7af976a0d24d5b3a898f /sci-biology | |
| parent | sci-biology/fgap: removed discontinued package (diff) | |
| download | sci-d6d5fc59399df2b7cf9a4d1b5033248fabc2031b.tar.gz sci-d6d5fc59399df2b7cf9a4d1b5033248fabc2031b.tar.bz2 sci-d6d5fc59399df2b7cf9a4d1b5033248fabc2031b.zip | |
sci-biology/fgap-bin: removed discontinued package
Package-Manager: Portage-3.0.8, Repoman-3.0.1
Signed-off-by: Horea Christian <chr@chymera.eu>
Diffstat (limited to 'sci-biology')
| -rw-r--r-- | sci-biology/fgap-bin/Manifest | 1 | ||||
| -rw-r--r-- | sci-biology/fgap-bin/fgap-bin-1.8.1.ebuild | 34 | ||||
| -rw-r--r-- | sci-biology/fgap-bin/metadata.xml | 15 |
3 files changed, 0 insertions, 50 deletions
diff --git a/sci-biology/fgap-bin/Manifest b/sci-biology/fgap-bin/Manifest deleted file mode 100644 index 0e259aae3..000000000 --- a/sci-biology/fgap-bin/Manifest +++ /dev/null @@ -1 +0,0 @@ -DIST FGAP_1_8_1_LINUX64b.tar.gz 19403911 BLAKE2B 673558a57851542cc961083bc01ae2e95456222fd26c7db767a278c9170b2dbb521fb8167c15a864946c0a453615d566c3ff7c2d05619d60a8d3e17c3f0a8c78 SHA512 fc8d626d158ef362b5aa5d8ef5ffb8840b1496ecb2f4714441d74bc3fca5eacac3eab1e6d93e4344b175eece2b8228d98794493c7d5d300fbb30a8a3b6b8afd0 diff --git a/sci-biology/fgap-bin/fgap-bin-1.8.1.ebuild b/sci-biology/fgap-bin/fgap-bin-1.8.1.ebuild deleted file mode 100644 index 40bd3b93c..000000000 --- a/sci-biology/fgap-bin/fgap-bin-1.8.1.ebuild +++ /dev/null @@ -1,34 +0,0 @@ -# Copyright 1999-2016 Gentoo Foundation -# Distributed under the terms of the GNU General Public License v2 - -EAPI=5 - -DESCRIPTION="Tool to close gaps in de novo assembled contigs or scaffolds" -HOMEPAGE="http://www.bioinfo.ufpr.br/fgap" -SRC_URI="https://sourceforge.net/projects/fgap/files/FGAP_1_8_1_LINUX64b.tar.gz" -# http://bmcresnotes.biomedcentral.com/articles/10.1186/1756-0500-7-371 - -LICENSE="MIT" -SLOT="0" -KEYWORDS="" -IUSE="" - -# Matlab (R2012a) or Octave (3.6.2) -# fag from sci-biology/fgap-bin needs /usr/local/MATLAB/R2012a/bin/glnx86/libmwi18n.so, which comes from MATLAB -# export LD_LIBRARY_PATH= /usr/local/MATLAB/R2012a/bin/glnx86 -# -# Source code (Octave/Matlab): https://sourceforge.net/projects/fgap/files/fgap.m - -# MATLAB Component Runtime v7.17: https://sourceforge.net/projects/fgap/files/MCR_LINUX64b.tar.gz -# http://www.mathworks.com/products/compiler/mcr/index.html -DEPEND="" -RDEPEND="${DEPEND} - sci-biology/ncbi-tools++" -S="${WORKDIR}"/FGAP_1_8_1_LINUX64b - -src_install(){ - dobin run_fgap.sh fgap - dodoc README - insinto /usr/share/"${PN}"/sample_data - doins sample_data/*.fasta -} diff --git a/sci-biology/fgap-bin/metadata.xml b/sci-biology/fgap-bin/metadata.xml deleted file mode 100644 index b53e13d28..000000000 --- a/sci-biology/fgap-bin/metadata.xml +++ /dev/null @@ -1,15 +0,0 @@ -<?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> -<pkgmetadata> - <maintainer type="person"> - <email>mmokrejs@fold.natur.cuni.cz</email> - <name>Martin Mokrejs</name> - </maintainer> - <maintainer type="project"> - <email>sci-biology@gentoo.org</email> - <name>Gentoo Biology Project</name> - </maintainer> - <upstream> - <remote-id type="sourceforge">fgap</remote-id> - </upstream> -</pkgmetadata> |