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| author |   Andrew Ammerlaan <andrewammerlaan@riseup.net> | 2021-03-06 15:54:52 +0100 |
|---|---|---|
| committer | Andrew Ammerlaan <andrewammerlaan@riseup.net> | 2021-03-06 15:54:52 +0100 |
| commit | da853fc6e6037207166108a7e7b76c74cda34360 (patch) | |
| tree | 1c18ffbd69ddb6e39a9d6ab6b9d34294f7223d4e /sci-biology | |
| parent | sci-biology/ssaha2-bin: EAPI bump (diff) | |
| download | sci-da853fc6e6037207166108a7e7b76c74cda34360.tar.gz sci-da853fc6e6037207166108a7e7b76c74cda34360.tar.bz2 sci-da853fc6e6037207166108a7e7b76c74cda34360.zip | |
sci-biology/stringtie: EAPI bump, version bump
Package-Manager: Portage-3.0.16, Repoman-3.0.2
Signed-off-by: Andrew Ammerlaan <andrewammerlaan@riseup.net>
Diffstat (limited to 'sci-biology')
| -rw-r--r-- | sci-biology/stringtie/Manifest | 1 | ||||
| -rw-r--r-- | sci-biology/stringtie/stringtie-2.1.5.ebuild | 29 |
2 files changed, 30 insertions, 0 deletions
diff --git a/sci-biology/stringtie/Manifest b/sci-biology/stringtie/Manifest index 1e23e3aa7..c84ed6577 100644 --- a/sci-biology/stringtie/Manifest +++ b/sci-biology/stringtie/Manifest @@ -1 +1,2 @@ DIST stringtie-1.3.4d.tar.gz 438025 BLAKE2B e9ea21f9d42cc90cb1fba200f13e840061bb8b34e1c3217aeaaee16edc2e2ededd5bae93d9575a7e198590d8ac8c4ba2d85f282a829d53296fd3edcd221a2d9a SHA512 450790af11536f1d9ac90e45af719b25bf7bd3a3123dcf8173b31e64446e650acb89bc9c9424c6fd0d527722fe204f510955308123f167ebd1c4334368fa2a4f +DIST stringtie-2.1.5.tar.gz 2028296 BLAKE2B 64415abd41b871e0cd5106b24804113ba17552869a342b4c5a1087a4262a2aa84e42d9b4fd0e07b2999850ea6d6d20f4241cb476daf0474364c367de0244e770 SHA512 c81eefc0e0fdd822dc28db5c3660a3beb47cf60c91aa3777bb850f5455db7e1f1d763e4323a5425626a56ecba196071e5b415c45ddbdf4d43b04c74a8cfac1d8 diff --git a/sci-biology/stringtie/stringtie-2.1.5.ebuild b/sci-biology/stringtie/stringtie-2.1.5.ebuild new file mode 100644 index 000000000..9b1e205da --- /dev/null +++ b/sci-biology/stringtie/stringtie-2.1.5.ebuild @@ -0,0 +1,29 @@ +# Copyright 1999-2021 Gentoo Authors +# Distributed under the terms of the GNU General Public License v2 + +EAPI=7 + +DESCRIPTION="Transcriptome assembler and RNA-Seq analysis on BAM files aka cufflinks" +HOMEPAGE="https://ccb.jhu.edu/software/stringtie + https://github.com/gpertea/stringtie" +SRC_URI="https://github.com/gpertea/stringtie/releases/download/v${PV}/${P}.tar.gz" + +LICENSE="Artistic-2 MIT" # MIT from bundled samtools-0.1.18 +SLOT="0" +KEYWORDS="~amd64 ~x86" + +# requires network +RESTRICT="test" + +# contains bundled and modified samtools-0.1.18 +# https://github.com/gpertea/stringtie/issues/185#issuecomment-400128090 +# +# contains bundled gclib (0.9.8?), a modified version? +# https://github.com/gpertea/stringtie/issues/186#issuecomment-400131844 +DEPEND="" +RDEPEND="${DEPEND}" + +src_install(){ + dobin stringtie + einstalldocs +} |