sci-biology/tclust: remove masked package

Signed-off-by: Andrew Ammerlaan <andrewammerlaan@riseup.net>

4 files changed, 0 insertions, 86 deletions

diff --git a/sci-biology/tclust/Manifest b/sci-biology/tclust/Manifest
deleted file mode 100644
index 2ad5e841b..000000000
--- a/sci-biology/tclust/Manifest
+++ /dev/null
@@ -1,2 +0,0 @@
-DIST gclib-110625.tar.gz 82727 BLAKE2B b99a89d39ed76c643a9e379cb7294c63ec0d186a106c331f6ff4df6a40fcc5585f81e4c9d6015af434e2a75ea46e0e3783dda627abae32276ce9204c719bef2f SHA512 a6819e6dcb092c13b4f5da7eca6c82a9a46b512aeff2596cb4b921aeb8088c40bf2283be66862ab4d2195062b8126169e02945bcf4c8d4f118fa1e34bccba197
-DIST tclust-110625.tar.gz 9521 BLAKE2B a37acdb940f8666c53e357fa653c61c074afb82a71b120afd0fa9e4e90591144964edeab3ecfb5cb3be29fb7474b438f0fddd961f7a702ab3e4ba3011f622327 SHA512 b61497340c3bac08de2b5db4c16e9c2bd616651a1d1ae8ebfd9d2c3e2c4a436aba094e179e669d18cf4069c29c6ea5f75fca45fdc84660bc75ade9c5c5cef451
diff --git a/sci-biology/tclust/files/tclust-110625-build.patch b/sci-biology/tclust/files/tclust-110625-build.patch
deleted file mode 100644
index 9474916af..000000000
--- a/sci-biology/tclust/files/tclust-110625-build.patch
+++ /dev/null
@@ -1,43 +0,0 @@
- Makefile |    9 ++++-----
- 1 files changed, 4 insertions(+), 5 deletions(-)
-
-diff --git a/Makefile b/Makefile
-index f4f69f1..30ba16e 100644
---- a/Makefile
-+++ b/Makefile
-@@ -11,8 +11,8 @@ SYSTYPE :=     $(shell uname)
- 
- # C compiler
- 
--CC      := g++
--CFLAGS  = -O2 -Wall ${SEARCHDIRS} -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_REENTRANT -fno-exceptions -fno-rtti -fno-strict-aliasing
-+CC      ?= g++
-+CXXFLAGS  += -Wall ${SEARCHDIRS} -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_REENTRANT -fno-exceptions -fno-rtti -fno-strict-aliasing
- 
- %.o : %.c
- 	${CC} ${CFLAGS} -c $< -o $@
-@@ -24,7 +24,7 @@ CFLAGS  = -O2 -Wall ${SEARCHDIRS} -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_
- 	${CC} ${CFLAGS} -c $< -o $@
- 
- %.o : %.cpp
--	${CC} ${CFLAGS} -c $< -o $@
-+	${CXX} ${CXXFLAGS} -c $< -o $@
- 
- %.o : %.cxx
- 	${CC} ${CFLAGS} -c $< -o $@
-@@ -32,14 +32,13 @@ CFLAGS  = -O2 -Wall ${SEARCHDIRS} -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_
- # C/C++ linker
- 
- LINKER    := g++
--LDFLAGS    =
- LOADLIBES := 
- 
- .PHONY : all
- all:    tclust
- 
- tclust:  ./tclust.o ${GCLDIR}/GBase.o ${GCLDIR}/GStr.o ${GCLDIR}/GArgs.o
--	${LINKER} ${LDFLAGS} -o $@ ${filter-out %.a %.so, $^} ${LOADLIBES}
-+	${CXX} ${LDFLAGS} -o $@ ${filter-out %.a %.so, $^} ${LOADLIBES}
- 
- # target for removing all object files
- 
diff --git a/sci-biology/tclust/metadata.xml b/sci-biology/tclust/metadata.xml
deleted file mode 100644
index 138cb7705..000000000
--- a/sci-biology/tclust/metadata.xml
+++ /dev/null
@@ -1,12 +0,0 @@
-<?xml version="1.0" encoding="UTF-8"?>
-<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
-<pkgmetadata>
-	<maintainer type="person">
-		<email>mmokrejs@fold.natur.cuni.cz</email>
-		<name>Martin Mokrejs</name>
-	</maintainer>
-	<maintainer type="project">
-		<email>sci-biology@gentoo.org</email>
-		<name>Gentoo Biology Project</name>
-	</maintainer>
-</pkgmetadata>
diff --git a/sci-biology/tclust/tclust-110625.ebuild b/sci-biology/tclust/tclust-110625.ebuild
deleted file mode 100644
index e10d495bc..000000000
--- a/sci-biology/tclust/tclust-110625.ebuild
+++ /dev/null
@@ -1,29 +0,0 @@
-# Copyright 1999-2015 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=5
-
-inherit eutils toolchain-funcs
-
-DESCRIPTION="Transitive closure clustering tool with overlap filtering options"
-HOMEPAGE="https://web.archive.org/web/20140726030702/http://compbio.dfci.harvard.edu/tgi/software/"
-SRC_URI="
-	ftp://occams.dfci.harvard.edu/pub/bio/tgi/software/tgicl/${PN}.tar.gz -> ${P}.tar.gz
-	ftp://occams.dfci.harvard.edu/pub/bio/tgi/software/tgicl/gclib.tar.gz -> gclib-${PV}.tar.gz"
-
-LICENSE="Artistic"
-SLOT="0"
-KEYWORDS="~amd64 ~x86"
-IUSE=""
-
-S=${WORKDIR}/${PN}
-
-src_prepare() {
-	epatch "${FILESDIR}"/${P}-build.patch
-	tc-export CC CXX
-}
-
-src_install() {
-	dobin ${PN}
-	dodoc README
-}