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| author |   Horea Christian <horea.christ@yandex.com> | 2017-01-04 12:13:11 +0100 |
|---|---|---|
| committer |   Justin Lecher <jlec@gentoo.org> | 2017-01-04 11:13:11 +0000 |
| commit | eda8f3c599b7c146c971ba0295235a99604062b8 (patch) | |
| tree | 9512ae9d7b4df640e15813127530455667cd596e /sci-biology | |
| parent | Update local USE description (diff) | |
| download | sci-eda8f3c599b7c146c971ba0295235a99604062b8.tar.gz sci-eda8f3c599b7c146c971ba0295235a99604062b8.tar.bz2 sci-eda8f3c599b7c146c971ba0295235a99604062b8.zip | |
sci-biology/fsl: fixed outstanding FSLDIR and GUI issues (#716)
* sci-biology/fsl: addressing FSLDIR via symlinks
* sci-biology/fsl: fixed FSL GUI
Package-Manager: Portage-2.3.3, Repoman-2.3.1
* sci-biology/fsl: EAPI update
Package-Manager: Portage-2.3.3, Repoman-2.3.1
Diffstat (limited to 'sci-biology')
| -rw-r--r-- | sci-biology/fsl/files/99fsl | 2 | ||||
| -rw-r--r-- | sci-biology/fsl/fsl-5.0.8.ebuild | 11 |
2 files changed, 10 insertions, 3 deletions
diff --git a/sci-biology/fsl/files/99fsl b/sci-biology/fsl/files/99fsl index ca37941f9..41db5c514 100644 --- a/sci-biology/fsl/files/99fsl +++ b/sci-biology/fsl/files/99fsl @@ -2,4 +2,4 @@ FSLOUTPUTTYPE=NIFTI_GZ FSLMULTIFILEQUIT=TRUE FSLTCLSH=tclsh FSLWISH=wish -FSLDIR=/usr +FSLDIR=/usr/share/fsl diff --git a/sci-biology/fsl/fsl-5.0.8.ebuild b/sci-biology/fsl/fsl-5.0.8.ebuild index 3e9dc991c..f6e57d189 100644 --- a/sci-biology/fsl/fsl-5.0.8.ebuild +++ b/sci-biology/fsl/fsl-5.0.8.ebuild @@ -1,8 +1,8 @@ -# Copyright 1999-2015 Gentoo Foundation +# Copyright 1999-2017 Gentoo Foundation # Distributed under the terms of the GNU General Public License v2 # $Id$ -EAPI=5 +EAPI=6 inherit eutils toolchain-funcs prefix @@ -87,6 +87,7 @@ src_prepare(){ $(grep -rl "\'\${FSLDIR}\'/doc" src/*) sed -i -e "s:\$FSLDIR/etc:/etc:g" `grep -rlI \$FSLDIR/etc *` + default } src_compile() { @@ -127,6 +128,12 @@ src_install() { # doins etc/matlab #fi + #the following is needed for FSL and depending programs to be able + #to find its files, since FSL uses an uncommon: + #https://github.com/gentoo-science/sci/pull/612#r60289295 + dosym /etc /usr/share/fsl/etc + dosym /usr/share/doc/${P} /usr/share/fsl/doc + doenvd "${FILESDIR}"/99fsl mv "${ED}"/usr/bin/{,fsl_}cluster || die } |