InCvs

6 files changed, 0 insertions, 197 deletions

diff --git a/sci-chemistry/cyana/ChangeLog b/sci-chemistry/cyana/ChangeLog
deleted file mode 100644
index 72a56508e..000000000
--- a/sci-chemistry/cyana/ChangeLog
+++ /dev/null
@@ -1,11 +0,0 @@
-# ChangeLog for sci-chemistry/cyana
-# Copyright 1999-2010 Gentoo Foundation; Distributed under the GPL v2
-# $Header: $
-
-*cyana-2.1 (20 Jan 2010)
-
-  20 Jan 2010; Justin Lecher (jlec) <jlec@j-schmitz.net>
-  +files/2.1-exec.patch, +cyana-2.1.ebuild, +files/2.1-typo.patch,
-  +metadata.xml:
-  Initial addition
-
diff --git a/sci-chemistry/cyana/Manifest b/sci-chemistry/cyana/Manifest
deleted file mode 100644
index 33817d2e3..000000000
--- a/sci-chemistry/cyana/Manifest
+++ /dev/null
@@ -1,16 +0,0 @@
------BEGIN PGP SIGNED MESSAGE-----
-Hash: SHA1
-
-AUX 2.1-exec.patch 1959 RMD160 c67a5748eb7627c1dc66d1e6546bc24416bf8263 SHA1 002889b52871499fe62e85d9217c1c3e0b52d163 SHA256 fe8835c6dcdb6a8befa32e6bff1b761c5c6ae6131f73750e18724fb96f9a9623
-AUX 2.1-typo.patch 484 RMD160 c947da047f562eedcc8036d8d97bef37885e1521 SHA1 65f772b18082b956ae5bdfebe8663a522b7d7cc3 SHA256 ef05c4254cf859e804c44cdfa5774aca5a2f1aa853f0b6c0bccee837db2a5b8b
-DIST cyana-2.1.tar 10055680 RMD160 a5acaf8ba6ab0a3436f350947e987100d13178b6 SHA1 f4f2cab8263f5d5edb8365cab4108605d1127331 SHA256 52a0dbeb3201b69907d7abc3e266aecf49ac281f97169599acef55bacb579bc3
-EBUILD cyana-2.1.ebuild 1357 RMD160 42f8ff74482c7fa816ef4d1d301dc96728c6a92b SHA1 d7e2fb5e2c4902836d8db0feca795dcb8c7707e0 SHA256 8972ee6525f7d9da655e2fae468cfbe98a1bb8e8da61dc7ef1aa8b1b829b8f4e
-MISC ChangeLog 307 RMD160 0205bdef39baee020add8581788481c7b0ceb75b SHA1 9adda5ef03a9b0de3cd5ecb53123ab4dbf86437a SHA256 99834ee05b832b8b00976a591b2f97cefbb0abbaebb4be3110fc9092daed54d4
-MISC metadata.xml 215 RMD160 bc9c07aa91f2f175542244e4e4522a73558210a1 SHA1 facb283386de1c0b6b938cdcd4dde04d1694298b SHA256 13f32353652adbd3d934d41381cfc2cacc9e1127c508cebc73806cc1026ee80c
------BEGIN PGP SIGNATURE-----
-Version: GnuPG v2.0.11 (GNU/Linux)
-
-iEYEARECAAYFAktXQ0oACgkQgAnW8HDreRYDswCfbPJAn+7qf36Neucw8YIgWeHv
-1ywAoMBWgisXa3pMnVN6cyoxBN1IvaM1
-=ZyaA
------END PGP SIGNATURE-----
diff --git a/sci-chemistry/cyana/cyana-2.1.ebuild b/sci-chemistry/cyana/cyana-2.1.ebuild
deleted file mode 100644
index 86c811c9e..000000000
--- a/sci-chemistry/cyana/cyana-2.1.ebuild
+++ /dev/null
@@ -1,72 +0,0 @@
-# Copyright 1999-2010 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Header: $
-
-EAPI="2"
-
-inherit eutils fortran toolchain-funcs
-
-# we need libg2c for gfortran # 136988
-FORTRAN="ifc"
-
-DESCRIPTION="Combined assignment and dynamics algorithm for NMR applications"
-HOMEPAGE="http://www.las.jp/english/products/s08_cyana/index.html"
-SRC_URI="cyana-2.1.tar"
-
-SLOT="0"
-KEYWORDS="~amd64 ~x86"
-LICENSE="as-is"
-IUSE="examples"
-
-RDEPEND=""
-DEPEND="${RDEPEND}"
-
-src_prepare() {
-	epatch "${FILESDIR}"/${PV}-typo.patch
-	epatch "${FILESDIR}"/${PV}-exec.patch
-
-	cat >> etc/config <<- EOF
-	VERSION=${PV}
-	SHELL=${EPREFIX}/bin/sh
-	FC=${FORTRANC}
-	FFLAGS=${FFLAGS}
-	FFLAGS2=${FFLAGS}
-	CC=$(tc-getCC)
-	FORK=g77fork.o
-	LDFLAGS=${LDFLAGS}
-	LIBS=-pthread -lpthread -liomp5
-	EOF
-
-	if [[ ${FORTRANC} == gfortran ]]; then
-		cat >> etc/config <<- EOF
-		DEFS=-Dgfortran
-		SYSTEM=gfortran
-		EOF
-	else
-		cat >> etc/config <<- EOF
-		DEFS=-Dintel
-		SYSTEM=intel
-		EOF
-	fi
-}
-
-src_compile() {
-	cd src
-	emake \
-		|| die
-}
-
-src_install() {
-	source etc/config
-	dobin cyana{job,table,filter,clean} || die
-	newbin src/${PN}/${PN}exe.${SYSTEM} ${PN} || die
-	insinto /usr/share/${PN}
-	doins -r lib macro help || die
-	use examples && doins -r demo
-
-	cat >> "${T}"/20cyana <<- EOF
-	CYANALIB="${EPREFIX}/usr/share/${PN}"
-	EOF
-
-	doenvd "${T}"/20cyana || die
-}
diff --git a/sci-chemistry/cyana/files/2.1-exec.patch b/sci-chemistry/cyana/files/2.1-exec.patch
deleted file mode 100644
index 28cd88d3e..000000000
--- a/sci-chemistry/cyana/files/2.1-exec.patch
+++ /dev/null
@@ -1,77 +0,0 @@
-diff --git a/cyana b/cyana
-index 4f746cf..a7ff060 100755
---- a/cyana
-+++ b/cyana
-@@ -45,16 +45,13 @@ shift `expr $optind - 1`
- 
- if [ "$h" ]; then usage=1; fi
- if [ "$usage" ]; then
--  echo "Usage: $prog -hctx parameters ..."					         
-+  echo "Usage: $prog -hS parameters ..."					         
-   echo  									         
-   echo "       -h	     help"						         
-   echo "       -c command    command to start program (must contain \$exefile)"          
-   echo "       -S            run in safe mode, i.e. within one directory"				         
--  echo "       -t system     explicit system type"				         
--  echo "       -x	     display name of executable without executing it"	         
-   exit 2
- fi
--if [ "$c" ]; then cmd="$c"; fi
- sys=$t
- mode=$x
- safe=$S
-@@ -65,23 +62,6 @@ safe=$S
- eval ${PROG}ARG='$*'
- export ${PROG}ARG
- 
--
--# ------ Set library name ------ 
--
--f=$0
--if [ `echo $f | sed 's,^/.*,+,'` != "+" ]; then f=`which $0`; fi
--odir=`pwd`
--while [ "`ls -l $f | awk '{ print substr($1,1,1) }'`" = "l" ]; do
--  l=`ls -l $f | awk '{ i = NF; print $i }'`
--  cd `dirname $f`; cd `dirname $l`; l=`pwd`/`basename $l`
--  f=$l
--done
--cd `dirname $f`
--libdir=`pwd | sed 's,/src/'${prog}'$,,'`
--cd $odir
--eval ${PROG}LIB=$libdir
--export ${PROG}LIB
--
- if [ "$safe" ]; then 
-   CYANAINIT=initsafe; export CYANAINIT
- fi
-@@ -89,29 +69,4 @@ fi
- 
- # ------ Start the program ------
- 
--if [ -d $libdir/src/$prog ]; then
--  exe=$libdir/src/$prog/$exe
--else
--  exe=$libdir/$exe
--fi
--if [ "$sys" = "" ]; then
--  sys=`$libdir/etc/identify`
--  files="$exe.$sys* $exe.gnu $exe.*"
--else
--  files=$exe.$sys
--fi
--for exefile in $files; do
--  if [ -x $exefile ]; then
--    if [ "$mode" ]; then
--      echo $exefile; exit 0
--    else
--      if [ "`echo $cmd | grep -c '\$exefile'`" -gt 0 ]; then
--        eval exec $cmd
--      else
--        eval exec $cmd $exefile
--      fi
--    fi
--  fi
--done
--echo "No executable found in \"`dirname $exe`\"."
--exit 1
-+exec cyana
diff --git a/sci-chemistry/cyana/files/2.1-typo.patch b/sci-chemistry/cyana/files/2.1-typo.patch
deleted file mode 100644
index 3f011a9b2..000000000
--- a/sci-chemistry/cyana/files/2.1-typo.patch
+++ /dev/null
@@ -1,13 +0,0 @@
-diff --git a/src/cyana/putpro.f b/src/cyana/putpro.f
-index d4080f9..4490225 100644
---- a/src/cyana/putpro.f
-+++ b/src/cyana/putpro.f
-@@ -66,7 +66,7 @@ c     ------------------------------------------------------ BMRB header
-      *    '   _Mol_residue_sequence',
-      *    ';'
-         do i=1,nr,20
--          write (iunit,'(20A1))') (rcode(rnam(j)),j=i,min(nr,i+19))
-+          write (iunit,'(20A1)') (rcode(rnam(j)),j=i,min(nr,i+19))
-         end do
- 
-         write (iunit,'(A)')
diff --git a/sci-chemistry/cyana/metadata.xml b/sci-chemistry/cyana/metadata.xml
deleted file mode 100644
index efb490d78..000000000
--- a/sci-chemistry/cyana/metadata.xml
+++ /dev/null
@@ -1,8 +0,0 @@
-<?xml version="1.0" encoding="UTF-8"?>
-<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
-<pkgmetadata>
-<herd>sci</herd>
-<maintainer>
-  <email>sci@gentoo.org</email>
-</maintainer>
-</pkgmetadata>