sci-chemistry/modeller: Version bump

Package-Manager: Portage-2.3.28, Repoman-2.3.9

2 files changed, 146 insertions, 0 deletions

diff --git a/sci-chemistry/modeller/Manifest b/sci-chemistry/modeller/Manifest
index 03036caee..8c5c6393b 100644
--- a/sci-chemistry/modeller/Manifest
+++ b/sci-chemistry/modeller/Manifest
@@ -1 +1,2 @@
 DIST modeller-9.12.tar.gz 29273842 BLAKE2B 06b4ba3ed918b7f4552ed4bfb358332e623402b92ba48c8def8b4a4f8fe2eba3f30a02b868746cde5a6d7109129f073851523676544bd749a58b86dc71e19198 SHA512 5c0acaf453771347a9de3a0c7240f7ce376244803748edb28923dbaefda779041211ef4b26af5a2774bdf6bc63d7c7d7e62e1354e1550a6742c9575076864352
+DIST modeller-9.19.tar.gz 34885366 BLAKE2B 46310bb7b26392aab2a68881ff666fe05e973ce85b59d16edcc1dab1b5c3f4a9396d991467d189656ac5b71b509049219e54ff246967f305671e57247bcf1f45 SHA512 04bf1195b58a337541e97fc9812b5c0887909a687e4a6004cc9deb89dd078dbc78148fd81552ba189c063b7373e35f4b4a0603e4638af4e2d40fa30625be4c63
diff --git a/sci-chemistry/modeller/modeller-9.19.ebuild b/sci-chemistry/modeller/modeller-9.19.ebuild
new file mode 100644
index 000000000..0d29c3843
--- /dev/null
+++ b/sci-chemistry/modeller/modeller-9.19.ebuild
@@ -0,0 +1,145 @@
+# Copyright 1999-2018 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=6
+
+PYTHON_COMPAT=( python2_7 )
+
+inherit distutils-r1 eutils multilib versionator
+
+DESCRIPTION="Homology or comparative modeling of protein three-dimensional structures"
+HOMEPAGE="http://salilab.org/modeller/"
+SRC_URI="http://salilab.org/${PN}/${PV}/${P}.tar.gz"
+
+LICENSE="modeller"
+KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
+IUSE="doc examples"
+SLOT="0"
+
+RESTRICT="mirror"
+
+DEPEND=">=dev-lang/swig-1.3"
+RDEPEND=""
+
+INPATH="${EPREFIX}"/opt/modeller${ver}
+
+QA_PREBUILT="/opt/*"
+
+pkg_setup() {
+	case ${ARCH} in
+		x86)
+			EXECTYPE="i386-intel8";;
+		amd64)
+			EXECTYPE="x86_64-intel8";;
+		*)
+			die "Your arch "${ARCH}" does not appear supported at this time.";;
+	esac
+}
+
+python_prepare_all(){
+	sed "s:i386-intel8:${EXECTYPE}:g" -i src/swig/setup.py || die
+	distutils-r1_python_prepare_all
+}
+
+python_compile(){
+	cd src/swig || die
+	swig -python -keyword -nodefaultctor -nodefaultdtor -noproxy modeller.i || die
+	distutils-r1_python_compile
+}
+
+python_install() {
+	cd src/swig || die
+	distutils-r1_python_install
+}
+
+python_install_all(){
+	cd "${S}" || die
+	sed \
+		-e "/^EXECUTABLE_TYPE/s:xxx:${EXECTYPE}:g" \
+		-e "/MODINSTALL/s:xxx:\"${INPATH}\":g" \
+		-i bin/modscript || die
+
+	sed -e "s;@TOPDIR\@;\"${INPATH}\";" \
+		-e "s;@EXETYPE\@;${EXECTYPE};" \
+		bin/modpy.sh.in > "${T}/modpy.sh"
+
+	insinto ${INPATH}
+	doins -r modlib
+	python_foreach_impl python_domodule modlib/modeller
+
+	insinto ${INPATH}/bin
+	doins -r bin/{lib,*top}
+
+	exeinto ${INPATH}/bin
+	doexe bin/{modscript,mod${PV}_${EXECTYPE}} "${T}"/modpy.sh
+
+	python_foreach_impl python_doscript bin/modslave.py
+	dosym ${INPATH}/bin/modscript /opt/bin/mod${PV}
+	dosym ${INPATH}/bin/modpy.sh /opt/bin/modpy.sh
+
+	exeinto ${INPATH}/lib/${EXECTYPE}/
+	doexe lib/${EXECTYPE}/lib*
+	dosym libmodeller.so.8 ${INPATH}/lib/${EXECTYPE}/libmodeller.so
+	dosym ../../${INPATH}/lib/${EXECTYPE}/libmodeller.so.8 /usr/$(get_libdir)/libmodeller.so.8
+
+	use doc && HTML_DOCS=( doc/. )
+	distutils-r1_python_install_all
+
+	if use examples; then
+		insinto /usr/share/${PN}/
+		doins -r examples
+	fi
+
+	insinto /etc/revdep-rebuild
+	cat >> "${T}"/40-${PN} <<- EOF
+	SEARCH_DIRS_MASK="${EPREFIX}/opt/modeller/lib/"
+	EOF
+	doins "${T}"/40-${PN}
+}
+
+pkg_postinst() {
+	if [[ ! -e "${INPATH}/modlib/modeller/config.py" ]]; then
+		echo install_dir = \"${INPATH}/\"> ${INPATH}/modlib/modeller/config.py
+	fi
+
+	if grep -q license ${INPATH}/modlib/modeller/config.py; then
+		einfo "A license key file is already present in ${IN_PATH}/modlib/modeller/config.py"
+	else
+		ewarn "Obtain a license Key from"
+		ewarn "http://salilab.org/modeller/registration.html"
+		ewarn "And run this before using modeller:"
+		ewarn "emerge --config =${CATEGORY}/${PF}"
+		ewarn "That way you can [re]enter your license key."
+	fi
+}
+
+pkg_postrm() {
+	ewarn "This package leaves a license Key file in ${INPATH}/modlib/modeller/config.py"
+	ewarn "that you need to remove to completely get rid of modeller."
+}
+
+pkg_config() {
+	ewarn "Your license key is NOT checked for validity here."
+	ewarn "  Make sure you type it in correctly."
+	eerror "If you CTRL+C out of this, modeller will not run!"
+	while true
+	do
+		einfo "Please enter your license key:"
+		read license_key1
+		einfo "Please re-enter your license key:"
+		read license_key2
+		if [[ "$license_key1" == "" ]]
+		then
+			echo "You entered a blank license key.  Try again."
+		else
+			if [[ "$license_key1" == "$license_key2" ]]
+			then
+				echo license = '"'$license_key1'"' >> "${INPATH}/modlib/modeller/config.py"
+				einfo "Thank you!"
+				break
+			else
+				eerror "Your license key entries do not match.  Try again."
+			fi
+		fi
+	done
+}