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authorJustin Lecher (jlec) <jlec@j-schmitz.net>2010-02-06 01:40:00 +0100
committerJustin Lecher (jlec) <jlec@j-schmitz.net>2010-02-07 00:55:37 +0100
commit0e05dddf2ec9df3b3db9ee3b8e7268e847e006a9 (patch)
tree323d0efd59d354c55d5bd14ece6e91f075dee57b /sci-chemistry/oasis
parentInCvs (diff)
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Diffstat (limited to 'sci-chemistry/oasis')
-rw-r--r--sci-chemistry/oasis/ChangeLog21
-rw-r--r--sci-chemistry/oasis/Manifest15
-rw-r--r--sci-chemistry/oasis/files/4.0-makefile.patch15
-rw-r--r--sci-chemistry/oasis/metadata.xml8
-rw-r--r--sci-chemistry/oasis/oasis-4.0-r1.ebuild67
5 files changed, 0 insertions, 126 deletions
diff --git a/sci-chemistry/oasis/ChangeLog b/sci-chemistry/oasis/ChangeLog
deleted file mode 100644
index a5e7dd5aa..000000000
--- a/sci-chemistry/oasis/ChangeLog
+++ /dev/null
@@ -1,21 +0,0 @@
-# ChangeLog for sci-chemistry/oasis
-# Copyright 1999-2010 Gentoo Foundation; Distributed under the GPL v2
-# $Header: $
-
-*oasis-4.0-r1 (30 Jan 2010)
-
- 30 Jan 2010; Justin Lecher (jlec) <jlec@j-schmitz.net> -oasis-4.0.ebuild,
- +oasis-4.0-r1.ebuild:
- remove forced RDEPEND on arp-warp
- RDEPEND changed sci-chemistry/ccp4 -> sci-chemistry/ccp4-apps, thanks alexxy for reporting
-
- 17 Nov 2009; Justin Lecher (jlec) <jlec@j-schmitz.net> oasis-4.0.ebuild:
- oasis4 USE removed again
-
-*oasis-4.0 (16 Nov 2009)
-
- 16 Nov 2009; Justin Lecher (jlec) <jlec@j-schmitz.net>
- +files/4.0-makefile.patch, +oasis-4.0.ebuild, +metadata.xml:
- Initial commit
- Written by me
-
diff --git a/sci-chemistry/oasis/Manifest b/sci-chemistry/oasis/Manifest
deleted file mode 100644
index 7553a08ca..000000000
--- a/sci-chemistry/oasis/Manifest
+++ /dev/null
@@ -1,15 +0,0 @@
------BEGIN PGP SIGNED MESSAGE-----
-Hash: SHA1
-
-AUX 4.0-makefile.patch 1277 RMD160 8c5a9c6feec0bbb1e80f4a1a48fd016ffc3ad77f SHA1 6d0a3503f650cafe67d5d5b1a7c0561de20c90b5 SHA256 4bafff2ae7e58a908d7203e56643122f56c0cc0ebca8a103f2ca73fefa5986ce
-DIST oasis4.0_Linux.zip 6714528 RMD160 9d5b46e06ab6b2e7e301622978056bf7b4208a79 SHA1 fab2e4556ad04556f918bae153e13a843415f0c9 SHA256 56da70ce0c2750aaddf64ad2cd7852fc341d2022209484beb356b4e73dec61ba
-EBUILD oasis-4.0-r1.ebuild 1330 RMD160 a125d2b0f1740c00a909393d401666182bb2fb6f SHA1 0ed431fec96e441451063bf6b910a3043130af56 SHA256 adba9eb16134450823965316b8fff8d5398d797927e291a2ab7687e75dcd1101
-MISC ChangeLog 662 RMD160 03776fac5cc2e2cc991492a05931528682ed5497 SHA1 137f63d7091808f46cf6478f180952a563974263 SHA256 293306919c88d51cb3aabaa2c350b75de4195dcd2245541ea6515dcc4baeade1
-MISC metadata.xml 215 RMD160 bc9c07aa91f2f175542244e4e4522a73558210a1 SHA1 facb283386de1c0b6b938cdcd4dde04d1694298b SHA256 13f32353652adbd3d934d41381cfc2cacc9e1127c508cebc73806cc1026ee80c
------BEGIN PGP SIGNATURE-----
-Version: GnuPG v2.0.11 (GNU/Linux)
-
-iEYEARECAAYFAktkk1gACgkQgAnW8HDreRZmGwCeMFix8f6T2tZqVAdblJP8zTQn
-JuUAn0d7Z+bW4ZSl6zxehIWt7U+xnpad
-=4ejx
------END PGP SIGNATURE-----
diff --git a/sci-chemistry/oasis/files/4.0-makefile.patch b/sci-chemistry/oasis/files/4.0-makefile.patch
deleted file mode 100644
index f27a350a1..000000000
--- a/sci-chemistry/oasis/files/4.0-makefile.patch
+++ /dev/null
@@ -1,15 +0,0 @@
-diff --git a/src/Makefile b/src/Makefile
-index 1e9128f..eb9edaf 100644
---- a/src/Makefile
-+++ b/src/Makefile
-@@ -20,8 +20,8 @@ IRIX:
- @ ${F77} -O2 -mips3 -nocpp -OPT:Olimit=1500 -w -rpath ${CCP4_LIB} -o oasis4-0 oasis4-0.f -L${CCP4_LIB}/src -lccp4f -lccp4c -lmmdb -lC -lm -L/usr/lib32 -lblas
- @ ${F77} -O2 -mips3 -nocpp -OPT:Olimit=1500 -w -rpath ${CCP4_LIB} -o fnp2fp fnp2fp.f -L${CCP4_LIB}/src -lccp4f -lccp4c -lmmdb -lC -lm -L/usr/lib32 -lblas
- Linux:
-- @ ${F77} -O -w -fno-second-underscore -fno-globals -fno-automatic -o oasis4-0 oasis4-0.f -L${CCP4_LIB} -lccp4f -lccp4c -lmmdb -lstdc++ -lg2c -lm -L${CCP4_LIB}
-- @ ${F77} -O -w -fno-second-underscore -fno-globals -fno-automatic -o fnp2fp fnp2fp.f -L${CCP4_LIB} -lccp4f -lccp4c -lmmdb -lstdc++ -lg2c -lm -L${CCP4_LIB}
-+ ${F77} $(CFLAGS) $(LDFLAGS) -o oasis oasis4-0.f -L${CCP4_LIB} -lccp4f -lccp4c -lmmdb -lstdc++ -lm -L${CCP4_LIB}
-+ ${F77} $(CFLAGS) $(LDFLAGS) -o fnp2fp fnp2fp.f -L${CCP4_LIB} -lccp4f -lccp4c -lmmdb -lstdc++ -lm -L${CCP4_LIB}
- Darwin:
- @ ${F77} -O2 -fno-second-underscore -o fnp2fp fnp2fp.f -L${CCP4_LIB} -lccp4f -lccp4c -lmmdb -lstdc++ -lgcc_s.10.5 -lSystem -lm
- @ ${F77} -O2 -fno-second-underscore -o oasis4-0 oasis4-0.f -L${CCP4_LIB} -lccp4f -lccp4c -lmmdb -lstdc++ -lgcc_s.10.5 -lSystem -lm
diff --git a/sci-chemistry/oasis/metadata.xml b/sci-chemistry/oasis/metadata.xml
deleted file mode 100644
index efb490d78..000000000
--- a/sci-chemistry/oasis/metadata.xml
+++ /dev/null
@@ -1,8 +0,0 @@
-<?xml version="1.0" encoding="UTF-8"?>
-<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
-<pkgmetadata>
-<herd>sci</herd>
-<maintainer>
- <email>sci@gentoo.org</email>
-</maintainer>
-</pkgmetadata>
diff --git a/sci-chemistry/oasis/oasis-4.0-r1.ebuild b/sci-chemistry/oasis/oasis-4.0-r1.ebuild
deleted file mode 100644
index f1ee9abea..000000000
--- a/sci-chemistry/oasis/oasis-4.0-r1.ebuild
+++ /dev/null
@@ -1,67 +0,0 @@
-# Copyright 1999-2010 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Header: $
-
-EAPI="2"
-
-inherit eutils multilib toolchain-funcs
-
-MY_P="${PN}${PV}_Linux"
-
-DESCRIPTION="A direct-method program for SAD/SIR phasing"
-HOMEPAGE="http://cryst.iphy.ac.cn/Project/protein/protein-I.html"
-SRC_URI="http://dev.gentooexperimental.org/~jlec/distfiles/${MY_P}.zip"
-
-SLOT="0"
-KEYWORDS="~amd64 ~x86"
-LICENSE="ccp4 oasis"
-IUSE="examples"
-
-RDEPEND="
- sci-chemistry/ccp4-apps
- sci-chemistry/pymol
- sci-chemistry/solve-resolve-bin
- sci-libs/ccp4-libs
- sci-libs/mmdb
- sci-visualization/gnuplot"
-DEPEND="${RDEPEND}"
-
-S="${WORKDIR}"/${MY_P}
-
-src_prepare() {
- rm bin/{fnp2fp,gnuplot,oasis4-0,seq} || die
- epatch "${FILESDIR}"/${PV}-makefile.patch
-}
-
-src_compile() {
- emake \
- -C src \
- F77="$(tc-getFC)" \
- CCP4_LIB="/usr/$(get_libdir)" \
- Linux || die
-}
-
-src_install() {
- dobin src/{${PN},fnp2fp} || die
-
- exeinto /usr/$(get_libdir)/${PN}
- doexe bin/*.*sh || die
-
- exeinto /usr/$(get_libdir)/${PN}/html
- doexe bin/html/* || die
-
- if use examples; then
- insinto /usr/share/${PN}
- doins -r examples || die
- fi
-
- cat >> "${T}"/25oasis <<- EOF
- oasisbin="/usr/$(get_libdir)/${PN}"
- EOF
-
- doenvd "${T}"/25oasis
-}
-
-pkg_postinst() {
- elog "For full functionality you need to emerge sci-chemistry/arp-warp-bin"
-}