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author | Justin Lecher <jlec@gentoo.org> | 2014-11-05 08:24:18 +0100 |
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committer | Justin Lecher <jlec@gentoo.org> | 2014-11-05 08:24:18 +0100 |
commit | 0acc85d3a08b77620f564c32e16480ad0a7ea034 (patch) | |
tree | 5cbda7ecc74b760e3ad09bda2017f409f48f390e /sci-chemistry/pymol/files | |
parent | dev-java/jogl: Bump to EAPI=5; drop old (diff) | |
download | sci-0acc85d3a08b77620f564c32e16480ad0a7ea034.tar.gz sci-0acc85d3a08b77620f564c32e16480ad0a7ea034.tar.bz2 sci-0acc85d3a08b77620f564c32e16480ad0a7ea034.zip |
sci-chemistry/pymol: Drop obsolete patches
Package-Manager: portage-2.2.14
Diffstat (limited to 'sci-chemistry/pymol/files')
-rw-r--r-- | sci-chemistry/pymol/files/pymol-9999-listing.patch | 17 | ||||
-rw-r--r-- | sci-chemistry/pymol/files/pymol-9999-options.patch | 15 | ||||
-rw-r--r-- | sci-chemistry/pymol/files/pymol-9999-tk8.6.patch | 66 |
3 files changed, 0 insertions, 98 deletions
diff --git a/sci-chemistry/pymol/files/pymol-9999-listing.patch b/sci-chemistry/pymol/files/pymol-9999-listing.patch deleted file mode 100644 index 1b4039c56..000000000 --- a/sci-chemistry/pymol/files/pymol-9999-listing.patch +++ /dev/null @@ -1,17 +0,0 @@ - pymol/modules/pymol/plugins/repository.py | 3 ++- - 1 file changed, 2 insertions(+), 1 deletion(-) - -diff --git a/pymol/modules/pymol/plugins/repository.py b/pymol/modules/pymol/plugins/repository.py -index 9697f68..9820fac 100644 ---- a/pymol/modules/pymol/plugins/repository.py -+++ b/pymol/modules/pymol/plugins/repository.py -@@ -182,7 +182,8 @@ class GithubRepository(HttpRepository): - - def fetchjson(self, url): - handle = urlopen('https://api.github.com' + url) -- return eval(handle.read()) -+ ret = handle.read().replace("false", "False") -+ return eval(ret) - - class LocalRepository(Repository): - def __init__(self, url): diff --git a/sci-chemistry/pymol/files/pymol-9999-options.patch b/sci-chemistry/pymol/files/pymol-9999-options.patch deleted file mode 100644 index ce05e172e..000000000 --- a/sci-chemistry/pymol/files/pymol-9999-options.patch +++ /dev/null @@ -1,15 +0,0 @@ - pymol/setup.py | 1 + - 1 file changed, 1 insertion(+) - -diff --git a/pymol/setup.py b/pymol/setup.py -index c446d6c..b7b353b 100644 ---- a/pymol/setup.py -+++ b/pymol/setup.py -@@ -51,6 +51,7 @@ def CCompiler_compile(self, sources, output_dir=None, macros=None, - class options: - osx_frameworks = False - jobs = int(os.getenv('JOBS', 0)) -+ no_libxml = False - - try: - import argparse diff --git a/sci-chemistry/pymol/files/pymol-9999-tk8.6.patch b/sci-chemistry/pymol/files/pymol-9999-tk8.6.patch deleted file mode 100644 index 529de8406..000000000 --- a/sci-chemistry/pymol/files/pymol-9999-tk8.6.patch +++ /dev/null @@ -1,66 +0,0 @@ -commit afb1c62e05d56dfbe2940f4f939428739d834f05 -Author: Thomas Holder <thomas.holder@schrodinger.com> -Date: Thu Oct 30 17:04:45 2014 -0400 - - fix apbs_tools for tcl/tk 8.6 - -diff --git a/modules/pmg_tk/startup/apbs_tools.py b/modules/pmg_tk/startup/apbs_tools.py -index 9b76070..c9f649c 100644 ---- a/modules/pmg_tk/startup/apbs_tools.py -+++ b/modules/pmg_tk/startup/apbs_tools.py -@@ -658,7 +658,6 @@ class APBSTools2: - page = self.notebook.add('Configuration') - - group = Pmw.Group(page,tag_text='Dielectric Constants') -- group.pack(fill = 'both', expand = 1, padx = 4, pady = 5) - group.grid(column=0, row=0) - self.interior_dielectric = Pmw.EntryField(group.interior(),labelpos='w', - label_text = 'Protein Dielectric:', -@@ -677,7 +676,6 @@ class APBSTools2: - #entry.pack(side='left',fill='both',expand=1,padx=4) # side-by-side - entry.pack(fill='x',expand=1,padx=4,pady=1) # vertical - group = Pmw.Group(page,tag_text='Other') -- group.pack(fill='both',expand=1, padx=4, pady=5) - group.grid(column=1, row=1,columnspan=4) - self.max_mem_allowed = Pmw.EntryField(group.interior(),labelpos='w', - label_text = 'Maximum Memory Allowed (MB):', -@@ -735,7 +733,6 @@ class APBSTools2: - - - group = Pmw.Group(page,tag_text='Ions') -- group.pack(fill='both',expand=1, padx=4, pady=5) - group.grid(column=0, row=1, ) - self.ion_plus_one_conc = Pmw.EntryField(group.interior(), - labelpos='w', -@@ -794,7 +791,6 @@ class APBSTools2: - entry.pack(fill='x',expand=1,padx=4) - - group = Pmw.Group(page,tag_text = 'Coarse Mesh Length') -- group.pack(fill = 'both', expand = 1, padx = 4, pady = 5) - group.grid(column = 1, row = 0) - for coord in 'x y z'.split(): - setattr(self,'grid_coarse_%s'%coord,Pmw.EntryField(group.interior(), -@@ -809,7 +805,6 @@ class APBSTools2: - - - group = Pmw.Group(page,tag_text = 'Fine Mesh Length') -- group.pack(fill = 'both', expand = 1, padx = 4, pady = 5) - group.grid(column = 2, row = 0) - for coord in 'x y z'.split(): - setattr(self,'grid_fine_%s'%coord,Pmw.EntryField(group.interior(), -@@ -824,7 +819,6 @@ class APBSTools2: - - - group = Pmw.Group(page,tag_text = 'Grid Center') -- group.pack(fill = 'both', expand = 1, padx = 4, pady = 5) - group.grid(column = 3, row = 0) - for coord in 'x y z'.split(): - setattr(self,'grid_center_%s'%coord,Pmw.EntryField(group.interior(), -@@ -838,7 +832,6 @@ class APBSTools2: - getattr(self,'grid_center_%s'%coord).pack(fill='x', expand=1, padx=4, pady=1) - - group = Pmw.Group(page,tag_text = 'Grid Points') -- group.pack(fill = 'both', expand = 1, padx = 4, pady = 5) - group.grid(column = 4, row = 0) - for coord in 'x y z'.split(): - setattr(self,'grid_points_%s'%coord,Pmw.EntryField(group.interior(), |