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| author |   je_fro <je_fro@32389bae-6d03-0410-99cf-db05cde120eb> | 2007-06-05 22:22:28 +0000 |
|---|---|---|
| committer | je_fro <je_fro@32389bae-6d03-0410-99cf-db05cde120eb> | 2007-06-05 22:22:28 +0000 |
| commit | 195d419b171176f2fbe20732412a1b2ed28d97d0 (patch) | |
| tree | 747b1f93d89dde3d6ec185081ec96c0e329c6e4f /sci-chemistry/pymol/files | |
| parent | Fixed a typo in jmol. (diff) | |
| download | sci-195d419b171176f2fbe20732412a1b2ed28d97d0.tar.gz sci-195d419b171176f2fbe20732412a1b2ed28d97d0.tar.bz2 sci-195d419b171176f2fbe20732412a1b2ed28d97d0.zip | |
Testing pymol-0.99_rc10.
git-svn-id: http://overlays.gentoo.org/svn/proj/science/overlay@647 32389bae-6d03-0410-99cf-db05cde120eb
Diffstat (limited to 'sci-chemistry/pymol/files')
| -rw-r--r-- | sci-chemistry/pymol/files/digest-pymol-0.99_rc10 | 0 | ||||
| -rw-r--r-- | sci-chemistry/pymol/files/nosplash-gentoo.patch | 8 | ||||
| -rw-r--r-- | sci-chemistry/pymol/files/pymol-0.99_rc10-data-path.patch | 64 |
3 files changed, 72 insertions, 0 deletions
diff --git a/sci-chemistry/pymol/files/digest-pymol-0.99_rc10 b/sci-chemistry/pymol/files/digest-pymol-0.99_rc10 new file mode 100644 index 000000000..e69de29bb --- /dev/null +++ b/sci-chemistry/pymol/files/digest-pymol-0.99_rc10 diff --git a/sci-chemistry/pymol/files/nosplash-gentoo.patch b/sci-chemistry/pymol/files/nosplash-gentoo.patch new file mode 100644 index 000000000..202a7cf88 --- /dev/null +++ b/sci-chemistry/pymol/files/nosplash-gentoo.patch @@ -0,0 +1,8 @@ +--- modules/pymol/invocation.py.orig 2003-06-11 13:40:13.000000000 -0400 ++++ modules/pymol/invocation.py 2003-06-11 13:40:29.000000000 -0400 +@@ -179,5 +179,3 @@ + + else: + options.deferred.append(a) +- if options.show_splash and not options.no_gui: +- options.deferred.insert(0,"_do__ cmd.splash(1)") diff --git a/sci-chemistry/pymol/files/pymol-0.99_rc10-data-path.patch b/sci-chemistry/pymol/files/pymol-0.99_rc10-data-path.patch new file mode 100644 index 000000000..286489ff8 --- /dev/null +++ b/sci-chemistry/pymol/files/pymol-0.99_rc10-data-path.patch @@ -0,0 +1,64 @@ +--- pymol-0.99rc8/modules/pymol/commanding.py 2007-04-18 02:11:48.000000000 -0400 ++++ commanding.py 2007-04-24 02:17:53.000000000 -0400 +@@ -129,11 +129,11 @@ + unlock(0) + r = DEFAULT_SUCCESS + if show_splash==1: # generic / open-source +- png_path = cmd.exp_path("$PYMOL_PATH/data/pymol/splash.png") ++ png_path = cmd.exp_path("$PYMOL_DATA/pymol/splash.png") + elif show_splash==2: # evaluation builds +- png_path = cmd.exp_path("$PYMOL_PATH/data/pymol/epymol.png") ++ png_path = cmd.exp_path("$PYMOL_DATA/pymol/epymol.png") + else: # incentive builds +- png_path = cmd.exp_path("$PYMOL_PATH/data/pymol/ipymol.png") ++ png_path = cmd.exp_path("$PYMOL_DATA/pymol/ipymol.png") + if os.path.exists(png_path): + cmd.do("_ cmd.load_png('%s',0,quiet=1)"%png_path) + else: +--- pymol-0.99rc8/modules/pymol/fitting.py 2007-04-18 02:11:48.000000000 -0400 ++++ fitting.py 2007-04-24 02:18:07.000000000 -0400 +@@ -61,7 +61,7 @@ + r = DEFAULT_ERROR + source = selector.process(source) + target = selector.process(target) +- mfile = cmd.exp_path("$PYMOL_PATH/data/pymol/matrices/"+matrix) ++ mfile = cmd.exp_path("$PYMOL_DATA/pymol/matrices/"+matrix) + if object==None: object='' + try: + lock() +--- pymol-0.99rc8/modules/pymol/importing.py 2007-04-18 02:11:47.000000000 -0400 ++++ importing.py 2007-04-24 02:18:46.000000000 -0400 +@@ -177,7 +177,7 @@ + r = DEFAULT_ERROR + + +- tables = { 'cmyk' : "$PYMOL_PATH/data/pymol/cmyk.png", ++ tables = { 'cmyk' : "$PYMOL_DATA/pymol/cmyk.png", + 'pymol' : 'pymol', + 'rgb' : 'rgb' } + +--- pymol-0.99rc8/modules/pymol/wizard/mutagenesis.py 2007-04-18 02:11:50.000000000 -0400 ++++ mutagenesis.py 2007-04-24 04:08:44.000000000 -0400 +@@ -35,8 +35,8 @@ + + self.dep = default_dep + +- self.ind_library = io.pkl.fromFile(os.environ['PYMOL_PATH']+ +- "/data/chempy/sidechains/sc_bb_ind.pkl") ++ self.ind_library = io.pkl.fromFile(os.environ['PYMOL_DATA']+ ++ "/chempy/sidechains/sc_bb_ind.pkl") + self.load_library() + self.status = 0 # 0 no selection, 1 mutagenizing + self.bump_check = 1 +@@ -108,8 +108,8 @@ + def load_library(self): + if self.dep == 'dep': + if not hasattr(self,'dep_library'): +- self.dep_library = io.pkl.fromFile(os.environ['PYMOL_PATH']+ +- "/data/chempy/sidechains/sc_bb_dep.pkl") ++ self.dep_library = io.pkl.fromFile(os.environ['PYMOL_DATA']+ ++ "/chempy/sidechains/sc_bb_dep.pkl") + + def set_mode(self,mode): + if mode in self.modes: + |