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author | Justin Lecher (jlec) <jlec@j-schmitz.net> | 2009-10-20 20:55:21 +0200 |
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committer | Justin Lecher (jlec) <jlec@j-schmitz.net> | 2009-10-20 20:55:36 +0200 |
commit | 7bae44202c216bef6963122bbe73f2a5a258a379 (patch) | |
tree | bfe943319a7b1eeb8a9bb0b9fa8867e813ef6c7b /sci-chemistry/refmac | |
parent | [sci-biology/sequin] Please dont brake metadata. Run repoman full before you ... (diff) | |
download | sci-7bae44202c216bef6963122bbe73f2a5a258a379.tar.gz sci-7bae44202c216bef6963122bbe73f2a5a258a379.tar.bz2 sci-7bae44202c216bef6963122bbe73f2a5a258a379.zip |
sci-chemistry/refmac version bump
(Portage version: 2.2_rc46/git/Linux x86_64)
(Signed Manifest commit)
Diffstat (limited to 'sci-chemistry/refmac')
-rw-r--r-- | sci-chemistry/refmac/ChangeLog | 6 | ||||
-rw-r--r-- | sci-chemistry/refmac/Manifest | 12 | ||||
-rw-r--r-- | sci-chemistry/refmac/refmac-5.5.0109.ebuild | 67 |
3 files changed, 80 insertions, 5 deletions
diff --git a/sci-chemistry/refmac/ChangeLog b/sci-chemistry/refmac/ChangeLog index 3f666a3d9..9ba76b553 100644 --- a/sci-chemistry/refmac/ChangeLog +++ b/sci-chemistry/refmac/ChangeLog @@ -2,6 +2,12 @@ # Copyright 1999-2009 Gentoo Foundation; Distributed under the GPL v2 # $Header: $ +*refmac-5.5.0109 (20 Oct 2009) + + 20 Oct 2009; Justin Lecher (jlec) <jlec@j-schmitz.net> + +refmac-5.5.0109.ebuild: + version bump + *refmac-5.5.0108 (17 Oct 2009) 17 Oct 2009; Justin Lecher (jlec) <jlec@j-schmitz.net> diff --git a/sci-chemistry/refmac/Manifest b/sci-chemistry/refmac/Manifest index cdc3a9520..c7c03be47 100644 --- a/sci-chemistry/refmac/Manifest +++ b/sci-chemistry/refmac/Manifest @@ -15,19 +15,21 @@ DIST refmac_5.5.0105.tar.gz 1326353 RMD160 39928431ed7efdfd300855f43bf6323dc723a DIST refmac_5.5.0106.tar.gz 1326422 RMD160 16207e528aea426efd70f7dca290b45eedda9050 SHA1 64bdc4ff6cb06c207a2382c4873092c9a4db0c8c SHA256 fe5d618a1aecbae8089cc0f0d2e8d6cdbd5e0afc4fca6c9783e393cabe6f63ce DIST refmac_5.5.0107.tar.gz 1326419 RMD160 360fe2dd88d31fc1b1afc077a15e469a1d8bdc13 SHA1 ab60eb466a46e7dae033225416e9883b8884c14b SHA256 aa605a689a194d596b0651f5116796d43d6e3967a6c496873bcdc712802a5fe8 DIST refmac_5.5.0108.tar.gz 1326723 RMD160 0c896be0980aa15f4879563c69bad649af340831 SHA1 4de851b1723a62f2d58c312d3c62b4cb7423fa32 SHA256 8480cea31c707263455daf94d8f6ff2c485d0ac642dc86bd8609d9bffe6883c0 -DIST test-framework.tar.gz 130940336 RMD160 46c813a10921b45c4a6865f336eea0b92e4c5431 SHA1 aff53b19244080fd755f6e95b54748e297c3a64c SHA256 59dafd97b6cf34432e58921ba65bb4820cbcd506d7a042984a8c228cf8e63aaa +DIST refmac_5.5.0109.tar.gz 1326744 RMD160 f88c466fb7fec331e2b4d49993e641e520d7eb78 SHA1 a9d0ae26e6e1b2e11c95947adb6bd6fb7daf0eb8 SHA256 5d575c53c358afcc4695856c94c6eee5f9e589c4a430f32c5733e2cd0097078b +DIST test-framework.tar.gz 130933173 RMD160 7122539dc713615dca2ddaddfd8d152cd22624d0 SHA1 1d3e3019a67afb9b2346e919c859d402d3250fea SHA256 df050a2a29da80518cb0616a0bbeb82298ea0721549348d15353bf0f66240605 EBUILD refmac-5.5.0102.ebuild 1584 RMD160 4fac2468c57c9ed9b34baf07a644103939b45c51 SHA1 2293bb927f5b6476317e5a485dbaa2cad60fbb2f SHA256 066766d009f97adb3d447f077ae4577bd5893d2af76c186ab06b4b16f47f41ec EBUILD refmac-5.5.0105.ebuild 1584 RMD160 4fac2468c57c9ed9b34baf07a644103939b45c51 SHA1 2293bb927f5b6476317e5a485dbaa2cad60fbb2f SHA256 066766d009f97adb3d447f077ae4577bd5893d2af76c186ab06b4b16f47f41ec EBUILD refmac-5.5.0106.ebuild 1584 RMD160 4fac2468c57c9ed9b34baf07a644103939b45c51 SHA1 2293bb927f5b6476317e5a485dbaa2cad60fbb2f SHA256 066766d009f97adb3d447f077ae4577bd5893d2af76c186ab06b4b16f47f41ec EBUILD refmac-5.5.0107.ebuild 1584 RMD160 4fac2468c57c9ed9b34baf07a644103939b45c51 SHA1 2293bb927f5b6476317e5a485dbaa2cad60fbb2f SHA256 066766d009f97adb3d447f077ae4577bd5893d2af76c186ab06b4b16f47f41ec EBUILD refmac-5.5.0108.ebuild 1584 RMD160 4fac2468c57c9ed9b34baf07a644103939b45c51 SHA1 2293bb927f5b6476317e5a485dbaa2cad60fbb2f SHA256 066766d009f97adb3d447f077ae4577bd5893d2af76c186ab06b4b16f47f41ec +EBUILD refmac-5.5.0109.ebuild 1584 RMD160 4fac2468c57c9ed9b34baf07a644103939b45c51 SHA1 2293bb927f5b6476317e5a485dbaa2cad60fbb2f SHA256 066766d009f97adb3d447f077ae4577bd5893d2af76c186ab06b4b16f47f41ec EBUILD refmac-5.6.0041.ebuild 1563 RMD160 b1d94d52ccb02971b627ed4469e3715e650d1f98 SHA1 7ba175283161f546ad91fc3f3bba717a035324fd SHA256 b1ee045e9c9a1c6aee6ee28e02876e0f1f869e195148eeb936521470228c2267 -MISC ChangeLog 7573 RMD160 cbc2f723138e3f4a085fc0e88228ffd798520ac1 SHA1 5d878aac60dedc000f5be1b655376c4a5ba35f15 SHA256 34b1d9b230180c4dc3589ea6b475101cd24a7bfba1f73de67426118de8ae3cac +MISC ChangeLog 7705 RMD160 b86b25a0d15e296710043822aaa523153b828f50 SHA1 d37c960e322bcee5d6aa1cc0c34209f154ff9ff7 SHA256 9b26c4de3849a7e455b0a6c72005d8700e2a0906605964977a5781bed1f8ad2d MISC metadata.xml 314 RMD160 d8922635160b6047732051715291e8553b513bba SHA1 b53fc6fb6cf908093794b876e729606c00351937 SHA256 50a519ddbcef4ad4f76175df36849a076d20adbb6340fdba292175b70c0d9719 -----BEGIN PGP SIGNATURE----- Version: GnuPG v2.0.11 (GNU/Linux) -iEYEARECAAYFAkraS8MACgkQgAnW8HDreRYFmQCeOymdLwTiEu8S+io99ODru5sV -GagAn2xog3lvn1qPc9pkyj6Z5OSXhWnH -=baiA +iEYEARECAAYFAkreB5kACgkQgAnW8HDreRZFcQCfdw+zge4/kVa7DZCk9ZSot0d+ +B/MAn0J6Z6Cax+uIKJdaNPnjma/kaB+u +=i8ZL -----END PGP SIGNATURE----- diff --git a/sci-chemistry/refmac/refmac-5.5.0109.ebuild b/sci-chemistry/refmac/refmac-5.5.0109.ebuild new file mode 100644 index 000000000..6085d7e34 --- /dev/null +++ b/sci-chemistry/refmac/refmac-5.5.0109.ebuild @@ -0,0 +1,67 @@ +# Copyright 1999-2009 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Header: $ + +EAPI="2" + +inherit fortran base toolchain-funcs versionator + +DESCRIPTION="Macromolecular crystallographic refinement program" +HOMEPAGE="http://www.ysbl.york.ac.uk/~garib/refmac/" +SRC_URI="${HOMEPAGE}data/refmac_stable/refmac_${PV}.tar.gz + test? ( http://dev.gentooexperimental.org/~jlec/distfiles/test-framework.tar.gz )" + +SLOT="0" +LICENSE="ccp4" +KEYWORDS="~amd64 ~x86" +IUSE="test" +RESTRICT="mirror" + +RDEPEND="virtual/lapack + virtual/blas + sci-libs/ccp4-libs + sci-libs/mmdb" +DEPEND="${RDEPEND}" + +S="${WORKDIR}" + +PATCHES=( + "${FILESDIR}"/$(get_version_component_range 1-2 ${PV})-allow-dynamic-linking.patch + ) + +src_prepare() { + base_src_prepare + use test && epatch "${FILESDIR}"/test.log.patch +} + +src_compile() { + emake \ + FC=$(tc-getFC) \ + CC=$(tc-getCC) \ + CXX=$(tc-getCXX) \ + COPTIM="${CFLAGS}" \ + FOPTIM="${FFLAGS:- -O2}" \ + VERSION="" \ + XFFLAGS="-fno-second-underscore" \ + LLIBCCP="-lccp4f -lccp4c -lccif -lmmdb -lstdc++" \ + LLIBLAPACK="-llapack -lblas" \ + || die +} + +src_test() { + einfo "Starting tests ..." + export PATH="${WORKDIR}/test-framework/scripts:${S}:${PATH}" + export CCP4_TEST="${WORKDIR}"/test-framework + export CCP4_SCR="${T}" + ln -sf refmac "${S}"/refmac5 + sed '/^ANISOU/d' -i ${CCP4_TEST}/data/pdb/1vr7.pdb + ccp4-run-thorough-tests -v test_refmac5 || die +} + +src_install() { + for i in refmac libcheck makecif; do + dobin ${i} || die + done + dosym refmac /usr/bin/refmac5 || die + dodoc refmac_keywords.pdf bugs_and_features.pdf || die +} |