InCvs

5 files changed, 0 insertions, 182 deletions

diff --git a/sci-chemistry/procheck/ChangeLog b/sci-chemistry/procheck/ChangeLog
deleted file mode 100644
index 1d79fb4ad..000000000
--- a/sci-chemistry/procheck/ChangeLog
+++ /dev/null
@@ -1,19 +0,0 @@
-# ChangeLog for sci-chemistry/procheck
-# Copyright 1999-2010 Gentoo Foundation; Distributed under the GPL v2
-# $Header: $
-
-  10 Jul 2010; Andreas K. Huettel (dilfridge) <mail@akhuettel.de>
-  procheck-3.5.4.ebuild:
-  Silence repoman.
-
-  29 Apr 2010; Justin Lecher <jlec@gentoo.org> procheck-3.5.4.ebuild:
-  keyword ~amd64-linux ~x86-linux
-
-  29 Apr 2010; Justin Lecher <jlec@gentoo.org> +files/3.5.4-ldflags.patch,
-  procheck-3.5.4.ebuild:
-  Fixing SRC_URI and LDFLAGS
-
-  09 Feb 2009; justin Lecher (jlec) <jlec@j-schmitz.net>
-  +sci-chemistry/procheck/metadata.xml:
-  moved from dberkholz overlay to sci. Thanks Donnie for the ebuild
-
diff --git a/sci-chemistry/procheck/Manifest b/sci-chemistry/procheck/Manifest
deleted file mode 100644
index e2ce35120..000000000
--- a/sci-chemistry/procheck/Manifest
+++ /dev/null
@@ -1,26 +0,0 @@
------BEGIN PGP SIGNED MESSAGE-----
-Hash: SHA1
-
-AUX 3.5.4-ldflags.patch 1649 RMD160 c47aa744cd81ce4601e105712c9fd2735161944d SHA1 02d967425cd85785c66f379270c9e70f2cba1581 SHA256 d46c5f8fbb6d7f6f1fedc522f311ae4c5baa12b9ff47e6d3970312e1b2b34e57
-DIST procheck-3.5.4-manual.tar.gz 517840 RMD160 0c4d79655bfa034b496675dfef20efd6953f4b75 SHA1 adc639d0e7dde0fcd34ee4eddb1fa1004aa2e8d4 SHA256 3c2faa505be05102ccbe23473abdddc1cd4dc87c6b5e74222b7ea5c27b18db5a
-DIST procheck-3.5.4.tar.gz 522013 RMD160 6737d6af80b9a4b5008a80558a0993a8689cd238 SHA1 f4c6ec36689064efe1f1eaa8303decbb3bd0993a SHA256 4923fe5a7b86d5369fd639d0c77cfb866e574f076ec8c52424d746e843a404f4
-EBUILD procheck-3.5.4.ebuild 1553 RMD160 0d6af246f3d9d034d353d996e26135fcf6b75776 SHA1 9c589eecd6d4bcdd9080c35e9444f2a2bdef0bbc SHA256 3c5999e65e686ca7edfa62cf7d6f3d12cca135d4f76704097f1cba872d832270
-MISC ChangeLog 635 RMD160 1b3542d31bbe9212e2c0223daaf71fa69ab17030 SHA1 4f2fe6c043b9861b7931e674e90c82ad9b3eb973 SHA256 007c0207ca9622422087971223af8ac8c07d39a5597374024df469355919be64
-MISC metadata.xml 249 RMD160 789eca813b850a4619f671586826b824098ec47b SHA1 554c0cc8335f6d6410f6f504bf032a7c6de36c89 SHA256 c3f71fe107b700acc3c21923ed360604cfd47ac3181d9ed7605a0472250a8064
------BEGIN PGP SIGNATURE-----
-Version: GnuPG v2.0.15 (GNU/Linux)
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diff --git a/sci-chemistry/procheck/files/3.5.4-ldflags.patch b/sci-chemistry/procheck/files/3.5.4-ldflags.patch
deleted file mode 100644
index 453aebe32..000000000
--- a/sci-chemistry/procheck/files/3.5.4-ldflags.patch
+++ /dev/null
@@ -1,49 +0,0 @@
-diff --git a/Makefile b/Makefile
-index c5bb58f..0394b0a 100644
---- a/Makefile
-+++ b/Makefile
-@@ -35,31 +35,31 @@ distrib :
- # Individual executables
- # ----------------------
- anglen : anglen.o
--	$(F77) $(FOPTS) -o $@ anglen.o
-+	$(F77) $(FOPTS) $(LDFLAGS) -o $@ anglen.o
- clean : clean.o
--	$(F77) $(FOPTS) -o $@ clean.o
-+	$(F77) $(FOPTS) $(LDFLAGS) -o $@ clean.o
- rmsdev : rmsdev.o
--	$(F77) $(FOPTS) -o $@ rmsdev.o
-+	$(F77) $(FOPTS) $(LDFLAGS) -o $@ rmsdev.o
- secstr : secstr.o
--	$(F77) $(FOPTS) -o $@ secstr.o
-+	$(F77) $(FOPTS) $(LDFLAGS) -o $@ secstr.o
- gfac2pdb : gfac2pdb.o ps.o
--	$(F77) $(FOPTS) -o $@ gfac2pdb.o ps.o
-+	$(F77) $(FOPTS) $(LDFLAGS) -o $@ gfac2pdb.o ps.o
- pplot : pplot.o ps.o
--	$(F77) $(FOPTS) -o $@ pplot.o ps.o
-+	$(F77) $(FOPTS) $(LDFLAGS) -o $@ pplot.o ps.o
- bplot : bplot.o ps.o
--	$(F77) $(FOPTS) -o $@ bplot.o ps.o
-+	$(F77) $(FOPTS) $(LDFLAGS) -o $@ bplot.o ps.o
- tplot : tplot.o ps.o
--	$(F77) $(FOPTS) -o $@ tplot.o ps.o
-+	$(F77) $(FOPTS) $(LDFLAGS) -o $@ tplot.o ps.o
- mplot : mplot.o ps.o
--	$(F77) $(FOPTS) -o $@ mplot.o ps.o
-+	$(F77) $(FOPTS) $(LDFLAGS) -o $@ mplot.o ps.o
- vplot : vplot.o ps.o
--	$(F77) $(FOPTS) -o $@ vplot.o ps.o
-+	$(F77) $(FOPTS) $(LDFLAGS) -o $@ vplot.o ps.o
- viol2pdb : viol2pdb.o ps.o
--	$(F77) $(FOPTS) -o $@ viol2pdb.o ps.o
-+	$(F77) $(FOPTS) $(LDFLAGS) -o $@ viol2pdb.o ps.o
- wirplot : wirplot.o ps.o
--	$(F77) $(FOPTS) -o $@ wirplot.o ps.o
-+	$(F77) $(FOPTS) $(LDFLAGS) -o $@ wirplot.o ps.o
- nb : nb.c
--	$(CC) $(COPTS) -o nb nb.c $(CLIBS)
-+	$(CC) $(COPTS) $(LDFLAGS) -o nb nb.c $(CLIBS)
- 
- # Individual rules for FORTRAN files with .inc files
- # --------------------------------------------------
diff --git a/sci-chemistry/procheck/metadata.xml b/sci-chemistry/procheck/metadata.xml
deleted file mode 100644
index 8487320ca..000000000
--- a/sci-chemistry/procheck/metadata.xml
+++ /dev/null
@@ -1,10 +0,0 @@
-<?xml version="1.0" encoding="UTF-8"?>
-<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
-<pkgmetadata>
-	<herd>sci</herd>
-	<maintainer>
-		<email>jlec@gentoo.org</email>
-		<name>Justin Lecher</name>
-	</maintainer>
-</pkgmetadata>
-
diff --git a/sci-chemistry/procheck/procheck-3.5.4.ebuild b/sci-chemistry/procheck/procheck-3.5.4.ebuild
deleted file mode 100644
index af33bd02d..000000000
--- a/sci-chemistry/procheck/procheck-3.5.4.ebuild
+++ /dev/null
@@ -1,78 +0,0 @@
-# Copyright 1999-2010 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Header: $
-
-EAPI="3"
-
-inherit eutils fortran toolchain-funcs versionator
-
-DESCRIPTION="Checks the stereochemical quality of a protein structure"
-HOMEPAGE="http://www.biochem.ucl.ac.uk/~roman/procheck/procheck.html"
-SRC_URI="
-	http://www.ebi.ac.uk/systems-srv/mp/file-exchange/${PN}.tar.gz?fno=2874 -> ${P}.tar.gz
-	http://www.ebi.ac.uk/systems-srv/mp/file-exchange/manual.tar.gz?fno=2568 -> ${P}-manual.tar.gz"
-
-LICENSE="procheck"
-SLOT="0"
-KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
-IUSE="doc"
-
-RDEPEND="app-shells/tcsh"
-DEPEND="${RDEPEND}"
-
-S="${WORKDIR}/${PN}"
-
-FORTRAN="gfortran g77"
-
-src_prepare() {
-	epatch "${FILESDIR}"/${PV}-ldflags.patch
-}
-
-src_compile() {
-	emake \
-		F77=${FORTRANC} \
-		CC=$(tc-getCC) \
-		COPTS="${CFLAGS}" \
-		FOPTS="${FFLAGS}" \
-		|| die "emake failed"
-}
-
-src_install() {
-	for i in *.scr; do
-		newbin ${i} ${i%.scr} || die
-	done
-
-	exeinto /usr/$(get_libdir)/${PN}/
-	doexe \
-		anglen \
-		bplot \
-		clean \
-		gfac2pdb \
-		mplot \
-		nb \
-		pplot \
-		rmsdev \
-		secstr \
-		tplot \
-		viol2pdb \
-		vplot \
-		wirplot || die
-	dodoc README
-
-	insinto /usr/$(get_libdir)/${PN}/
-	doins procheck.dat procheck.prm procheck_comp.prm procheck_nmr.prm || die
-	newins resdefs.dat resdefs.data || die
-
-	cat <<- EOF >> "${T}"/30${PN}
-	prodir="${EPREFIX}/usr/$(get_libdir)/${PN}/"
-	EOF
-
-	insinto /etx/profile.d/
-	doins "${T}"/30${PN} || die
-
-	if use doc; then
-		pushd "${WORKDIR}"
-			dohtml -A prm,txt -r manual/* || die
-		popd
-	fi
-}