minuit version bump

git-svn-id: http://overlays.gentoo.org/svn/proj/science/overlay@441 32389bae-6d03-0410-99cf-db05cde120eb

7 files changed, 15 insertions, 327 deletions

diff --git a/sci-libs/cfitsio/ChangeLog b/sci-libs/cfitsio/ChangeLog
index 7b1e57f59..f86ff1685 100644
--- a/sci-libs/cfitsio/ChangeLog
+++ b/sci-libs/cfitsio/ChangeLog
@@ -2,6 +2,12 @@
 # Copyright 1999-2006 Gentoo Foundation; Distributed under the GPL v2
 # $Header: $
 
+  29 Dec 2006; Sebastien Fabbro <seb@ist.utl.pt>
+  -cfitsio-3.020.ebuild
+  -files/cfitsio-3.020-Makefile.am
+  -files/cfitsio-3.020-configure.ac
+  Cleaning.
+	
 *cfitsio-3.030 (15 Dec 2006)
 
   15 Dec 2006; Sebastien Fabbro <seb@ist.utl.pt>
diff --git a/sci-libs/cfitsio/Manifest b/sci-libs/cfitsio/Manifest
index b2808a9d4..1042f5e6c 100644
--- a/sci-libs/cfitsio/Manifest
+++ b/sci-libs/cfitsio/Manifest
@@ -1,11 +1,3 @@
-AUX cfitsio-3.020-Makefile.am 1116 RMD160 08afce15f78e42102a64ea930e27dd58ca9ad4fd SHA1 b3bf278c73fb322bf148aa11b8187cb0026886d8 SHA256 8eb73aca98f52adee1298769880d6ce3af43979bab421640c21ef77552a945a1
-MD5 69bcffe4718b7e7ccf6061a49fe28474 files/cfitsio-3.020-Makefile.am 1116
-RMD160 08afce15f78e42102a64ea930e27dd58ca9ad4fd files/cfitsio-3.020-Makefile.am 1116
-SHA256 8eb73aca98f52adee1298769880d6ce3af43979bab421640c21ef77552a945a1 files/cfitsio-3.020-Makefile.am 1116
-AUX cfitsio-3.020-configure.ac 6748 RMD160 4caca2a7aeac01169e1d96d77243dc72624e200a SHA1 0a18328b27ccacd67072c9bc60bcc153eb1b9c62 SHA256 58114a16226a1099fabc91a9b1cb0fd831372965793c703f7c1dd8a7b9dd2a40
-MD5 c978aeb1ad0c691efe354a94fd5c9545 files/cfitsio-3.020-configure.ac 6748
-RMD160 4caca2a7aeac01169e1d96d77243dc72624e200a files/cfitsio-3.020-configure.ac 6748
-SHA256 58114a16226a1099fabc91a9b1cb0fd831372965793c703f7c1dd8a7b9dd2a40 files/cfitsio-3.020-configure.ac 6748
 AUX cfitsio-3.030-Makefile.am 1129 RMD160 c5fc764515ee6aad29859f14c8a1e42937c36db7 SHA1 d26d9da4634a847425476b2b2f436c08eebbc673 SHA256 2a3c0235ab2257becc9ed65f2d36921040cdfbac4bddc949b6770f88eeef3934
 MD5 ad23360f22cab53c477348423aba27e7 files/cfitsio-3.030-Makefile.am 1129
 RMD160 c5fc764515ee6aad29859f14c8a1e42937c36db7 files/cfitsio-3.030-Makefile.am 1129
@@ -18,27 +10,19 @@ AUX cfitsio-cfortran.patch 348 RMD160 7a9bbcf6a724c2ec7563dfc1d3dd38f232ddeaf0 S
 MD5 f2f05a0eeac7137fe4ddd0d99a63aa6b files/cfitsio-cfortran.patch 348
 RMD160 7a9bbcf6a724c2ec7563dfc1d3dd38f232ddeaf0 files/cfitsio-cfortran.patch 348
 SHA256 9a45d0d7efc3492e2323c601841b98d1de17356b30a50709f02aa266d05180e2 files/cfitsio-cfortran.patch 348
-DIST cfitsio3020.tar.gz 2235262 RMD160 5c6a3ea06a6b180da4dee5d48c0fc16e7f8647fc SHA1 bac3f5ac273375b3b37b11fd131edb0bc50f7d5c SHA256 ff5974f070f68c7d1e90f145cc8af2f6115169f06354a19cb85afafc60cd9e25
 DIST cfitsio3030.tar.gz 2236701 RMD160 0a8935a17161fad16016aba6219a347c6891d994 SHA1 cbaadf586ec760071edf2968820de98d8541a9d0 SHA256 f21774a31274b851eb6d2d366266a6fe48a265b4ba87dc0ac8abacb48de77383
-EBUILD cfitsio-3.020.ebuild 1007 RMD160 fdd43cc773d88fbec7cfe3654dbff5bfaebf5300 SHA1 656ccfb0aff9cf93c88e01aebd9233f940e3a163 SHA256 72340353773594ab7e59a2b7a32e490c22b3fff395b344e94f9818c92333d962
-MD5 17de674fa353922156827e1e90a68b8c cfitsio-3.020.ebuild 1007
-RMD160 fdd43cc773d88fbec7cfe3654dbff5bfaebf5300 cfitsio-3.020.ebuild 1007
-SHA256 72340353773594ab7e59a2b7a32e490c22b3fff395b344e94f9818c92333d962 cfitsio-3.020.ebuild 1007
-EBUILD cfitsio-3.030.ebuild 1007 RMD160 fdd43cc773d88fbec7cfe3654dbff5bfaebf5300 SHA1 656ccfb0aff9cf93c88e01aebd9233f940e3a163 SHA256 72340353773594ab7e59a2b7a32e490c22b3fff395b344e94f9818c92333d962
-MD5 17de674fa353922156827e1e90a68b8c cfitsio-3.030.ebuild 1007
-RMD160 fdd43cc773d88fbec7cfe3654dbff5bfaebf5300 cfitsio-3.030.ebuild 1007
-SHA256 72340353773594ab7e59a2b7a32e490c22b3fff395b344e94f9818c92333d962 cfitsio-3.030.ebuild 1007
-MISC ChangeLog 1044 RMD160 ab54c529a282f20dfa353f5e3e51bc8202a6f1af SHA1 df88e1e13baae5e4a9c9ac062c46aa27989d6129 SHA256 2d141b9dd638b2426f349ed029e99b3b4f38575d543aa0dc50e9d1eaf16fe04e
-MD5 7a9e79a901734b392962366f8dfe4aa3 ChangeLog 1044
-RMD160 ab54c529a282f20dfa353f5e3e51bc8202a6f1af ChangeLog 1044
-SHA256 2d141b9dd638b2426f349ed029e99b3b4f38575d543aa0dc50e9d1eaf16fe04e ChangeLog 1044
+EBUILD cfitsio-3.030.ebuild 1009 RMD160 9d7aa088e9f04895881649ccc10544b76a221655 SHA1 a5fa4ee496bfbf82a0730034f12559e7f1efcbe2 SHA256 44c1ea3b5183a60a7c01d3d3f8895b2bddf6c2cf7d7ac711aadcd9f149b48ea0
+MD5 98950824de98ccefd4ea4be220eefd65 cfitsio-3.030.ebuild 1009
+RMD160 9d7aa088e9f04895881649ccc10544b76a221655 cfitsio-3.030.ebuild 1009
+SHA256 44c1ea3b5183a60a7c01d3d3f8895b2bddf6c2cf7d7ac711aadcd9f149b48ea0 cfitsio-3.030.ebuild 1009
+MISC ChangeLog 1202 RMD160 a933b24c3b0b8156029106556aefb0bcf5946263 SHA1 4fe333e8f873bff4d70b93b8e1c1d062d623ddcc SHA256 df517a88c6476479726650c60d1f79244ae43485a5e35631563f56e641a3fbbc
+MD5 006532e19f3c10dafe8376550131ffca ChangeLog 1202
+RMD160 a933b24c3b0b8156029106556aefb0bcf5946263 ChangeLog 1202
+SHA256 df517a88c6476479726650c60d1f79244ae43485a5e35631563f56e641a3fbbc ChangeLog 1202
 MISC metadata.xml 682 RMD160 3d948185e7f50b2204fe0cd7f3b5f9f69bbe1fa3 SHA1 16d40c60a6140b93b0dcf1f53c1e9d161a641038 SHA256 5e52e553d1de1284403b19d3783036f5abb2d384a203053de4e85c70104fc24c
 MD5 ca9445640206098f48ec8d2620c3b6a1 metadata.xml 682
 RMD160 3d948185e7f50b2204fe0cd7f3b5f9f69bbe1fa3 metadata.xml 682
 SHA256 5e52e553d1de1284403b19d3783036f5abb2d384a203053de4e85c70104fc24c metadata.xml 682
-MD5 07616bcf9d4d500210015bb451e4db3d files/digest-cfitsio-3.020 238
-RMD160 c33af276b1b94f6e8b49f10d154934a4a639c664 files/digest-cfitsio-3.020 238
-SHA256 e2dd073549c819f2afe5b92913557a2fddd88da64b9f0b3c2f72d116831673e9 files/digest-cfitsio-3.020 238
 MD5 28870c9035a06f780c6ea425d724fe82 files/digest-cfitsio-3.030 238
 RMD160 016faa3f1b5bd07e59380bfab84edeccef02cfcd files/digest-cfitsio-3.030 238
 SHA256 98b81405e59975402e014c015fae52e687cf5ef2cb594550dd19cc9eb6d6d26f files/digest-cfitsio-3.030 238
diff --git a/sci-libs/cfitsio/cfitsio-3.020.ebuild b/sci-libs/cfitsio/cfitsio-3.020.ebuild
deleted file mode 100644
index 128b19674..000000000
--- a/sci-libs/cfitsio/cfitsio-3.020.ebuild
+++ /dev/null
@@ -1,43 +0,0 @@
-# Copyright 1999-2006 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Header: $
-
-inherit autotools
-
-IUSE="doc"
-
-DESCRIPTION="C and Fortran library for manipulating FITS files"
-HOMEPAGE="http://heasarc.gsfc.nasa.gov/docs/software/fitsio/fitsio.html"
-SRC_URI="ftp://heasarc.gsfc.nasa.gov/software/fitsio/c/${PN}${PV//.}.tar.gz"
-
-LICENSE="GPL-2"
-SLOT="0"
-KEYWORDS="~amd64 ~x86"
-
-DEPEND="dev-lang/cfortran"
-
-S=${WORKDIR}/${PN}
-
-src_unpack() {
-	unpack ${A}
-	cd "${S}"
-	epatch "${FILESDIR}"/${PN}-cfortran.patch
-	cp "${FILESDIR}"/${P}-Makefile.am Makefile.am
-	cp "${FILESDIR}"/${P}-configure.ac configure.ac
-	eautoreconf
-}
-
-src_test() {
-	make testprog
-	./testprog > testprog.lis
-	diff testprog.lis testprog.out || die "test failed"
-	cmp testprog.fit testprog.std  || die "failed"
-}
-
-src_install () {
-	make DESTDIR="${D}" install || die "make install failed"
-	dodoc changes.txt README License.txt
-	insinto /usr/share/doc/${PF}
-	doins cookbook.{f,c}
-	use doc && dodoc *.ps
-}
diff --git a/sci-libs/cfitsio/cfitsio-3.030.ebuild b/sci-libs/cfitsio/cfitsio-3.030.ebuild
index 128b19674..69c8b0790 100644
--- a/sci-libs/cfitsio/cfitsio-3.030.ebuild
+++ b/sci-libs/cfitsio/cfitsio-3.030.ebuild
@@ -35,7 +35,7 @@ src_test() {
 }
 
 src_install () {
-	make DESTDIR="${D}" install || die "make install failed"
+	emake DESTDIR="${D}" install || die "emake install failed"
 	dodoc changes.txt README License.txt
 	insinto /usr/share/doc/${PF}
 	doins cookbook.{f,c}
diff --git a/sci-libs/cfitsio/files/cfitsio-3.020-Makefile.am b/sci-libs/cfitsio/files/cfitsio-3.020-Makefile.am
deleted file mode 100644
index 6a65c8f75..000000000
--- a/sci-libs/cfitsio/files/cfitsio-3.020-Makefile.am
+++ /dev/null
@@ -1,26 +0,0 @@
-lib_LTLIBRARIES = libcfitsio.la
-libcfitsio_la_SOURCES = \
-	buffers.c cfileio.c checksum.c compress.c drvrfile.c drvrmem.c \
-	drvrnet.c drvrsmem.c editcol.c edithdu.c eval_l.c eval_y.c \
-	eval_f.c fitscore.c getcol.c getcolb.c getcold.c getcole.c \
-	getcoli.c getcolj.c getcolk.c getcoll.c getcols.c getcolsb.c \
-	getcoluk.c getcolui.c getcoluj.c getkey.c group.c grparser.c \
-	histo.c iraffits.c \
-	modkey.c putcol.c putcolb.c putcold.c putcole.c putcoli.c \
-	putcolj.c putcolk.c putcoluk.c putcoll.c putcols.c putcolsb.c \
-	putcolu.c putcolui.c putcoluj.c putkey.c region.c scalnull.c \
-	swapproc.c wcssub.c wcsutil.c imcompress.c quantize.c ricecomp.c \
-	pliocomp.c  fits_hcompress.c fits_hdecompress.c \
-	f77_wrap1.c f77_wrap2.c f77_wrap3.c f77_wrap4.c
-libcfitsio_la_LIBADD = -lm
-include_HEADERS = fitsio.h fitsio2.h longnam.h drvrsmem.h
-LDADD = libcfitsio.la
-noinst_PROGRAMS = testprog speed cookbook
-bin_PROGRAMS = fitscopy imcopy listhead
-testprog_SOURCES = testprog.c
-
-fitscopy_SOURCES = fitscopy.c
-speed_SOURCES = speed.c
-imcopy_SOURCES = imcopy.c
-listhead_SOURCES = listhead.c
-cookbook_SOURCES = cookbook.c
diff --git a/sci-libs/cfitsio/files/cfitsio-3.020-configure.ac b/sci-libs/cfitsio/files/cfitsio-3.020-configure.ac
deleted file mode 100644
index 20dc49fd8..000000000
--- a/sci-libs/cfitsio/files/cfitsio-3.020-configure.ac
+++ /dev/null
@@ -1,230 +0,0 @@
-#                                               -*- Autoconf -*-
-# Process this file with autoconf to produce a configure script.
-
-AC_PREREQ(2.59)
-AC_INIT(cfitsio, 3.020, pence@tetra.gsfc.nasa.gov)
-AM_INIT_AUTOMAKE([foreign])
-AC_PROG_LIBTOOL
-
-# taken from configure.in
-# determine system type
-#--------------------------------------------------------------------
-AC_PROGRAM_CHECK(uname_found, uname, 1, 0)
-
-if test $uname_found -eq 0 ; then
-    echo "cfitsio: No uname found; setting system type to unknown."
-    system="unknown"
-else
-    system=`uname -s`-`uname -r`
-fi
-
-case $system in
-    Darwin-*)
-        # For large file support (but may break Absoft compilers):
-        AC_DEFINE(_LARGEFILE_SOURCE)
-        AC_DEFINE(_FILE_OFFSET_BITS,64)
-	;;
-    HP-UX-*)
-	if test "x$CFORTRANFLAGS" = x ; then
-		CFORTRANFLAGS="-Dappendus"
-	fi
-	CFLAGS="$CFLAGS -DPG_PPU" 
-	LIBPRE="-Wl,"
-	;;
-    SunOS-5*)
-	if test "x$CFORTRANFLAGS" = x ; then
-		CFORTRANFLAGS="-Dsolaris"
-	fi
-        # For large file support:
-        AC_DEFINE(_LARGEFILE_SOURCE)
-        AC_DEFINE(_FILE_OFFSET_BITS,64)
-	;;
-    IRIX*)
-	CFLAGS="$CFLAGS -DHAVE_POSIX_SIGNALS"
-	;;
-    Linux*)
-        AC_DEFINE(_LARGEFILE_SOURCE)
-        AC_DEFINE(_FILE_OFFSET_BITS,64)
-	;;
-    CYGWIN*)
-	CFLAGS="$CFLAGS -DHAVE_POSIX_SIGNALS"
-	;;
-    *)
-	;;
-esac
-
-CFLAGS="$CFLAGS $CFORTRANFLAGS"
-
-case $CC in
-	gcc)
-		GCCVERSION="`gcc -dumpversion 2>&1`"
-		echo "cfitsio: == Using gcc version $GCCVERSION"
-		AC_SUBST(GCCVERSION)
-                changequote(,)
-		if test `echo $GCCVERSION | grep -c '2\.[45678]'` -gt 0
-		then
-		    CFLAGS=`echo $CFLAGS | sed 's:-O[^ ]* *::'`
-#		    AC_MSG_WARN(This gcc is pretty old. Disabling optimization to be safe.)
-		fi
-                changequote([,])
-		;;
-	cc)
-		echo "cfitsio: Old CFLAGS is $CFLAGS"
-		CFLAGS=`echo $CFLAGS | sed -e "s/-g/-O/"`
-		case $system in
-		    SunOS-5*)
-			changequote(,)
-			if test `echo $CFLAGS | grep -c fast` -gt 0
-			then
-			   echo "cfitsio: Replacing -fast with -O3"
-			   CFLAGS=`echo $CFLAGS | sed 's:-fast:-O3:'`
-			fi
-			changequote([,])
-         		CFLAGS="$CFLAGS -DHAVE_ALLOCA_H -DHAVE_POSIX_SIGNALS"
-			;;
-		    *)
-			echo "== No special changes for $system"
-			;;
-		esac
-		echo "New CFLAGS is $CFLAGS"
-		;;
-	*)
-		# Don't do anything now
-		;;
-esac
-
-# ================= test for the unix ftruncate function ================
-
-AC_MSG_CHECKING("whether ftruncate works")
-AC_TRY_LINK([#include <unistd.h>
-], [
-ftruncate(0, 0);
-], [
-AC_DEFINE(HAVE_FTRUNCATE)
-AC_MSG_RESULT("yes")
-], AC_MSG_RESULT("no") )
-
-
-# ---------------------------------------------------------
-# some systems define long long for 64-bit ints
-# ---------------------------------------------------------
- 
-AC_MSG_CHECKING("whether long long is defined")
-AC_TRY_COMPILE([#include <stdlib.h>
-], [
-long long filler;
-], [
-AC_DEFINE(HAVE_LONGLONG)
-AC_MSG_RESULT("yes")
-], AC_MSG_RESULT("no") )
-
-# ==================== SHARED MEMORY DRIVER SECTION =======================
-#
-# 09-Mar-98 : modified by JB/ISDC
-# 3 checks added to support autoconfiguration of shared memory
-# driver. First generic check is made whether shared memory is supported
-# at all, then 2 more specific checks are made (architecture dependent).
-# Currently tested on : sparc-solaris, intel-linux, sgi-irix, dec-alpha-osf
-
-# -------------------------------------------------------------------------
-# check is System V IPC is supported on this machine
-# -------------------------------------------------------------------------
-
-AC_MSG_CHECKING("whether system V style IPC services are supported")
-AC_TRY_LINK([#include <sys/ipc.h>
-#include <sys/shm.h>
-#include <sys/sem.h>
-], [
-shmat(0, 0, 0);
-shmdt(0);
-shmget(0, 0, 0);
-semget(0, 0, 0);
-], [
-AC_DEFINE(HAVE_SHMEM_SERVICES)
-my_shmem=\${SOURCES_SHMEM}
-AC_MSG_RESULT("yes")
-], AC_MSG_RESULT("no") )
-
-AC_SUBST(my_shmem)
-
-# -------------------------------------------------------------------------
-# some systems define flock_t, for others we have to define it ourselves
-# -------------------------------------------------------------------------
-
-AC_MSG_CHECKING("do we have flock_t defined in sys/fcntl.h")
-AC_TRY_COMPILE([#include <sys/fcntl.h>
-], [
-flock_t filler;
-], [
-AC_DEFINE(HAVE_FLOCK_T)
-AC_MSG_RESULT("yes") 
-], AC_MSG_RESULT("no") )
-
-if test "$HAVE_FLOCK_T" != 1; then
-   AC_MSG_CHECKING("do we have flock_t defined in sys/flock.h")
-   AC_TRY_COMPILE([#include <sys/flock.h>
-   ], [
-   flock_t filler;
-   ], [
-   AC_DEFINE(HAVE_FLOCK_T)
-   AC_MSG_RESULT("yes") 
-   ], AC_MSG_RESULT("no") )
-fi
-
-# -------------------------------------------------------------------------
-# there are some idiosyncrasies with semun defs (used in semxxx). Solaris
-# does not define it at all
-# -------------------------------------------------------------------------
-
-AC_MSG_CHECKING("do we have union semun defined")
-AC_TRY_COMPILE(
-[#include <sys/ipc.h>
-#include <sys/shm.h>
-#include <sys/sem.h>
-], [
-union semun filler;
-], [
-AC_DEFINE(HAVE_UNION_SEMUN)   
-AC_MSG_RESULT("yes")
-], AC_MSG_RESULT("no") )
-
-# ==================== END OF SHARED MEMORY DRIVER SECTION ================
-# ================= test for the unix networking functions ================
-
-#--------------------------------------------------------------------
-#	Check for the existence of the -lsocket and -lnsl libraries.
-#	The order here is important, so that they end up in the right
-#	order in the command line generated by make.  Here are some
-#	special considerations:
-#	1. Use "connect" and "accept" to check for -lsocket, and
-#	   "gethostbyname" to check for -lnsl.
-#	2. Use each function name only once:  can't redo a check because
-#	   autoconf caches the results of the last check and won't redo it.
-#	3. Use -lnsl and -lsocket only if they supply procedures that
-#	   aren't already present in the normal libraries.  This is because
-#	   IRIX 5.2 has libraries, but they aren't needed and they're
-#	   bogus:  they goof up name resolution if used.
-#	4. On some SVR4 systems, can't use -lsocket without -lnsl too.
-#	   To get around this problem, check for both libraries together
-#	   if -lsocket doesn't work by itself.
-#--------------------------------------------------------------------
-cfitsio_checkBoth=0
-AC_CHECK_FUNC(connect, cfitsio_checkSocket=0, cfitsio_checkSocket=1)
-if test "$cfitsio_checkSocket" = 1; then
-    AC_CHECK_LIB(socket, main, LIBS="$LIBS -lsocket", cfitsio_checkBoth=1)
-fi
-if test "$cfitsio_checkBoth" = 1; then
-    tk_oldLibs=$LIBS
-    LIBS="$LIBS -lsocket -lnsl"
-    AC_CHECK_FUNC(accept, cfitsio_checkNsl=0, [LIBS=$tk_oldLibs])
-fi
-AC_CHECK_FUNC(gethostbyname, , AC_CHECK_LIB(nsl, main, [LIBS="$LIBS -lnsl"]))
-
-AC_DEFINE(HAVE_NET_SERVICES)
-
-# ==================== END OF unix networking SECTION ================
-
-
-AC_CONFIG_FILES([Makefile])
-AC_OUTPUT
-
diff --git a/sci-libs/cfitsio/files/digest-cfitsio-3.020 b/sci-libs/cfitsio/files/digest-cfitsio-3.020
deleted file mode 100644
index e7d6f7022..000000000
--- a/sci-libs/cfitsio/files/digest-cfitsio-3.020
+++ /dev/null
@@ -1,3 +0,0 @@
-MD5 fbc9e0db4d4b48b0a6a8de0f2036eb47 cfitsio3020.tar.gz 2235262
-RMD160 5c6a3ea06a6b180da4dee5d48c0fc16e7f8647fc cfitsio3020.tar.gz 2235262
-SHA256 ff5974f070f68c7d1e90f145cc8af2f6115169f06354a19cb85afafc60cd9e25 cfitsio3020.tar.gz 2235262