sci-libs/nipype: add 1.8.6, drop 1.5.0

Signed-off-by: Horea Christian <chr@chymera.eu>

1 files changed, 0 insertions, 98 deletions

diff --git a/sci-libs/nipype/nipype-1.5.0.ebuild b/sci-libs/nipype/nipype-1.5.0.ebuild
deleted file mode 100644
index 750c3ba05..000000000
--- a/sci-libs/nipype/nipype-1.5.0.ebuild
+++ /dev/null
@@ -1,98 +0,0 @@
-# Copyright 1999-2023 Gentoo Authors
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=8
-
-PYTHON_COMPAT=( python3_{10..11} )
-PYTHON_REQ_USE="threads(+),sqlite"
-
-inherit distutils-r1
-
-DESCRIPTION="Neuroimaging in Python: Pipelines and Interfaces"
-HOMEPAGE="https://nipype.readthedocs.io/"
-SRC_URI="https://github.com/nipy/nipype/archive/${PV}.tar.gz -> ${P}.tar.gz"
-
-LICENSE="BSD"
-SLOT="0"
-KEYWORDS="~amd64 ~x86"
-IUSE="test"
-RESTRICT="!test? ( test )"
-
-DEPEND="
-	dev-python/numpy[${PYTHON_USEDEP}]
-	dev-python/prov[${PYTHON_USEDEP}]
-	sci-libs/nibabel[${PYTHON_USEDEP}]
-	test? (
-		dev-python/mock[${PYTHON_USEDEP}]
-		dev-python/pytest[${PYTHON_USEDEP}]
-		${RDEPEND}
-		)
-"
-# Dependency disabled as upstream test configuration which requires it fails
-#dev-python/pytest-xdist[${PYTHON_USEDEP}]
-
-RDEPEND="
-	>=dev-python/click-6.6[${PYTHON_USEDEP}]
-	dev-python/filelock[${PYTHON_USEDEP}]
-	dev-python/networkx[${PYTHON_USEDEP}]
-	dev-python/packaging[${PYTHON_USEDEP}]
-	dev-python/pydot[${PYTHON_USEDEP}]
-	dev-python/pydotplus[${PYTHON_USEDEP}]
-	dev-python/python-dateutil[${PYTHON_USEDEP}]
-	>=dev-python/rdflib-5.0.0[${PYTHON_USEDEP}]
-	dev-python/scipy[${PYTHON_USEDEP}]
-	dev-python/simplejson[${PYTHON_USEDEP}]
-	dev-python/traits[${PYTHON_USEDEP}]
-"
-
-PATCHES=(
-	"${FILESDIR}/${P}"-version_check.patch
-	"${FILESDIR}/${P}"-collections.patch
-)
-
-src_prepare() {
-	# Remove etelemetry
-	sed -i '/"etelemetry/d' nipype/info.py requirements.txt || die
-
-	# Mark failing tests
-	sed -i \
-		-e "/def test_no_et(tmp_path):/i@pytest.mark.skip('Known to fail by upstream: https://github.com/nipy/nipype/issues/3196#issuecomment-606003186')" \
-		nipype/tests/test_nipype.py || die
-	sed -i \
-		-e "/def test_fslversion():/i@pytest.mark.skip('Known to fail by upstream: https://github.com/nipy/nipype/issues/3196#issuecomment-605997462')" \
-		nipype/interfaces/fsl/tests/test_base.py || die
-	default
-}
-
-python_install_all() {
-	distutils-r1_python_install_all
-	doenvd "${FILESDIR}/98nipype"
-}
-
-EPYTEST_DESELECT=(
-	nipype/algorithms/tests/test_CompCor.py::TestCompCor::test_compcor
-	nipype/algorithms/tests/test_CompCor.py::TestCompCor::test_compcor_variance_threshold_and_metadata
-	nipype/algorithms/tests/test_CompCor.py::TestCompCor::test_tcompcor
-	nipype/interfaces/tests/test_io.py::test_s3datagrabber_communication
-	nipype/utils/tests/test_cmd.py::TestNipypeCMD::test_main_returns_0_on_help
-)
-
-python_test() {
-	# Setting environment variable to disable etelemetry version check:
-	# https://github.com/nipy/nipype/issues/3196#issuecomment-605980044
-	NIPYPE_NO_ET=1 epytest
-	# Upstream test configuration fails
-		#-c nipype/pytest.ini\
-		#--doctest-modules nipype\
-		#--cov nipype\
-		#--cov-config .coveragerc\
-		#--cov-report xml:cov.xml\
-}
-
-pkg_postinst() {
-	echo
-	einfo "Please run the following commands if you"
-	einfo "intend to use nipype from an existing shell:"
-	einfo "source /etc/profile"
-	echo
-}