aboutsummaryrefslogtreecommitdiff
diff options
context:
space:
mode:
authorJustin Lecher (jlec) <jlec@j-schmitz.net>2009-06-19 19:58:51 +0200
committerJustin Lecher (jlec) <jlec@j-schmitz.net>2009-06-19 19:58:51 +0200
commit0734420b77ffbf1e3b81882ffaf995ff1ec5568b (patch)
tree3e85664f92d4b911f41d3abd33d7cb61b0f89186 /sci-libs
parentrefmac unstable bump and dep to new monomer-db added (diff)
downloadsci-0734420b77ffbf1e3b81882ffaf995ff1ec5568b.tar.gz
sci-0734420b77ffbf1e3b81882ffaf995ff1ec5568b.tar.bz2
sci-0734420b77ffbf1e3b81882ffaf995ff1ec5568b.zip
monomer-db reversioning and addition of "maybe" unstable monomer-db
This has to be involved
Diffstat (limited to 'sci-libs')
-rw-r--r--sci-libs/monomer-db/ChangeLog9
-rw-r--r--sci-libs/monomer-db/Manifest8
-rw-r--r--sci-libs/monomer-db/monomer-db-0.090426.ebuild (renamed from sci-libs/monomer-db/monomer-db-20090426-r2.ebuild)1
-rw-r--r--sci-libs/monomer-db/monomer-db-5.13.ebuild32
4 files changed, 47 insertions, 3 deletions
diff --git a/sci-libs/monomer-db/ChangeLog b/sci-libs/monomer-db/ChangeLog
index 54c3e7dfb..1e934ae1a 100644
--- a/sci-libs/monomer-db/ChangeLog
+++ b/sci-libs/monomer-db/ChangeLog
@@ -2,6 +2,15 @@
# Copyright 1999-2009 Gentoo Foundation; Distributed under the GPL v2
# $Header: $
+*monomer-db-5.13 (19 Jun 2009)
+*monomer-db-0.090426 (19 Jun 2009)
+
+ 19 Jun 2009; Justin Lecher (jlec) <jlec@j-schmitz.net>
+ +monomer-db-0.090426.ebuild, +monomer-db-5.13.ebuild,
+ -monomer-db-20090426-r2.ebuild:
+ reversioned based on the discovery of the large monomerdb which is avaible
+ with refmac
+
*monomer-db-20090426-r2 (29 Apr 2009)
29 Apr 2009; Justin Lecher (jlec) <jlec@j-schmitz.net>
diff --git a/sci-libs/monomer-db/Manifest b/sci-libs/monomer-db/Manifest
index 1965ed48a..5fbecd67b 100644
--- a/sci-libs/monomer-db/Manifest
+++ b/sci-libs/monomer-db/Manifest
@@ -1,4 +1,6 @@
-DIST monomer-db-20090426.tar.gz 3129184 RMD160 cebaf0d8bc43dd221bf0c77fcf6d694ca65d479c SHA1 5f53124156c7fb0da59496dc2f484039a4fc9728 SHA256 55898355c57be44c7117f91d03fbaa6be116137e49ba236b80b13eec62876d4b
-EBUILD monomer-db-20090426-r2.ebuild 693 RMD160 63ccd2fb061caae5f47120bff46825ad7cd0e70e SHA1 d534eb6ebff2118cccd6376ee817c07f439c67fc SHA256 ed555db717ceda80f243ea4d8b470bd7b092ab8506636c589d0e8eb12ea8af15
-MISC ChangeLog 662 RMD160 50ae5efc79a9bfcda97f624cb387f07d6e73b8a4 SHA1 5f265c8566ffafac9d6f3ac654851fcfb5563f6f SHA256 d24755fa90858422c564f7944f4b10f54dd580ffe34c213c943ef8e43ac87095
+DIST monomer-db-0.090426.tar.gz 3129184 RMD160 cebaf0d8bc43dd221bf0c77fcf6d694ca65d479c SHA1 5f53124156c7fb0da59496dc2f484039a4fc9728 SHA256 55898355c57be44c7117f91d03fbaa6be116137e49ba236b80b13eec62876d4b
+DIST refmac_dictionary_v5.13.tar.gz 21739189 RMD160 7eceb21a6f22d118d8318ea409eb341cdec637b6 SHA1 7c9d8f261e8842c7c50a228a9c793c5a1fa726a0 SHA256 0513f5f2471db56bccda8d50ecc46305984c774f21b1c6d0b46cc411ec5a68e5
+EBUILD monomer-db-0.090426.ebuild 766 RMD160 4f0a43e0fd1819e390f77c3af18af82d50268928 SHA1 dbcd0b2d1c5836c5266f5520dc04d48c49a4d5d5 SHA256 3f8dfb10f6689c35d9befdb0156bf94002ec3c0682bd5fb72c679206f729c6d0
+EBUILD monomer-db-5.13.ebuild 744 RMD160 4aeb9b4f492acdf751fdcdab4633525cb441f017 SHA1 c3b319dcfe2f651e2021505249e9825ac8db4c42 SHA256 a843d3729810c823527ff006dc987995d201d0f882a0b18f5ba6e0b7f42453c8
+MISC ChangeLog 968 RMD160 2bb8caaffc0b8d9f8c87df8e66dcec936b3bbea5 SHA1 a1a1fe3c3de72598ed9d72a2a049b33e27ed0d36 SHA256 004159ebf7940a757f947434c1798947bf12e9dcc610ab6704bbd65ba5233bce
MISC metadata.xml 215 RMD160 bc9c07aa91f2f175542244e4e4522a73558210a1 SHA1 facb283386de1c0b6b938cdcd4dde04d1694298b SHA256 13f32353652adbd3d934d41381cfc2cacc9e1127c508cebc73806cc1026ee80c
diff --git a/sci-libs/monomer-db/monomer-db-20090426-r2.ebuild b/sci-libs/monomer-db/monomer-db-0.090426.ebuild
index 46a326c70..ab4e0e760 100644
--- a/sci-libs/monomer-db/monomer-db-20090426-r2.ebuild
+++ b/sci-libs/monomer-db/monomer-db-0.090426.ebuild
@@ -6,6 +6,7 @@
DESCRIPTION="Monomer library used for macromolecular structure building and refinement."
HOMEPAGE="www.ccp4.ac.uk"
+# http://www.ysbl.york.ac.uk/~garib/refmac/data/refmac_dictionary.tar.gz
SRC_URI="http://dev.gentooexperimental.org/~jlec/science-dist/${P}.tar.gz"
LICENSE="ccp4"
diff --git a/sci-libs/monomer-db/monomer-db-5.13.ebuild b/sci-libs/monomer-db/monomer-db-5.13.ebuild
new file mode 100644
index 000000000..d9bc3319a
--- /dev/null
+++ b/sci-libs/monomer-db/monomer-db-5.13.ebuild
@@ -0,0 +1,32 @@
+# Copyright 1999-2009 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: $
+
+# inherit
+
+MY_PN="refmac_dictionary"
+
+DESCRIPTION="Monomer library used for macromolecular structure building and refinement."
+HOMEPAGE="www.ccp4.ac.uk"
+SRC_URI="http://www.ysbl.york.ac.uk/~garib/refmac/data/refmac_experimental/${MY_PN}_v${PV}.tar.gz"
+
+SLOT="0"
+LICENSE="ccp4"
+KEYWORDS="~amd64 ~ppc ~x86"
+IUSE=""
+RESTRICT="binchecks strip"
+
+RDEPEND="!<sci-chemistry/ccp4-6.1
+ !<sci-libs/ccp4-libs-6.1.1-r1"
+DEPEND="${RDEPEND}"
+
+S="${WORKDIR}"/dic
+
+src_install() {
+ insinto /usr/share/ccp4/data/monomers/
+ for i in {a..z} {1..9} *list *.cif *.txt; do
+ doins -r ${i} || die
+ done
+ dodoc *.txt || die
+ dohtml *.html || die
+}