Merge branch 'master' of git://git.overlays.gentoo.org/proj/sci; github.com:gentoo-science/sci

9 files changed, 137 insertions, 269 deletions

diff --git a/sci-libs/mkl/ChangeLog b/sci-libs/mkl/ChangeLog
index ce281d4d6..907a30430 100644
--- a/sci-libs/mkl/ChangeLog
+++ b/sci-libs/mkl/ChangeLog
@@ -2,6 +2,11 @@
 # Copyright 1999-2013 Gentoo Foundation; Distributed under the GPL v2
 # $Header: $
 
+  08 Dec 2013; Justin Lecher <jlec@gentoo.org> -mkl-11.0.3.163.ebuild,
+  -mkl-11.0.5.192.ebuild, -mkl-11.1.0.080.ebuild, +mkl-11.1.0.080-r1.ebuild:
+  Fix linking problems with openmp support, #492802; thanks Andrew Savchenko
+  for the patch
+
 *mkl-11.1.0.080 (02 Oct 2013)
 
   02 Oct 2013; Justin Lecher <jlec@gentoo.org> +mkl-11.1.0.080.ebuild:
diff --git a/sci-libs/mkl/Manifest b/sci-libs/mkl/Manifest
index 9ab270d71..3e655f11f 100644
--- a/sci-libs/mkl/Manifest
+++ b/sci-libs/mkl/Manifest
@@ -1,7 +1 @@
 DIST parallel_studio_xe_2013_sp1.tgz 3294385739 SHA256 ba65fdf7afbac0276a948ef8d4e1578297a0115548d5f3465c7ed4012030f696 SHA512 ee7995d39b604de6fed0bb87535c48666ca9ffa13975b6adcce170d746f2ee648b5c4a428ed8ef196226f204b3b17a833f379ab4fa57b4a1ebe7c89cc899ea66 WHIRLPOOL 213c8261c161df80732d958bf9e13a286aca2dd6ce16be30fee92d626051bc855c4a1ffe82b12f1bf9095771ca5b128463d839c14748d086b50527e7d09b76a7
-DIST parallel_studio_xe_2013_update3.tgz 2173061577 SHA256 98b3bfe9feefa8caaa1bea533362f31bcfe96aa8f9e59fc89f6a453d50df7508 SHA512 c6115f01b045c840b61e3c2a17fd39142c814d4e387fa5bc935c5cc6ca365c3fedddb6d8c045b5c239b948b42c02254d8b73c42cfe16d046dcf14d3a4597bbde WHIRLPOOL e857fbf0fc73406f7d787400f8ed6e45e93825616fe3d2d10dcd26fa03d56cd956a0b598270724be4ab3886d77502e0f456077ed3008cffc6bdb4abe60acedce
-DIST parallel_studio_xe_2013_update3_ia32.tgz 1207596909 SHA256 57017db1b00345d46ef9dff67dd4e5754ed0fe67fae7335489447f948dbfe7a8 SHA512 f3656fcbda74f253c8cc0ca56e16a84d77854ef51ecc7f24db02c820270bef3954d0d97d1be2aa5cf2ea7703a6e442c3be15df28de570aac7062e5c5958581a4 WHIRLPOOL 0407b59697da8a69c8ac512dec4187bf27eeb2e80516cd6a99968ef3b30a31e55eeaa31ec4bcbd34fe23678e68c4f00cc5dfce579edfb0268b789e1e65285945
-DIST parallel_studio_xe_2013_update3_intel64.tgz 1508395753 SHA256 081bc3d617f04243d459d92d05398df1a3634faf3de554346f732ed83ed4ef06 SHA512 344678ba9c6029ab095cc656c2153b20f0f996dab45115296fb624eca3863763e4010b519595892ffeecfc1a0880901ef5ae53924e41e470aec46efd0abcd822 WHIRLPOOL 1295f579ecc50014b285d47ecf6b92d1b9d0c2cbadd1a5972a832178263a9b3d4cf4208153df40e270c259c1307ed21277239e70371b39eaf4e12171c25a3c1f
-DIST parallel_studio_xe_2013_update4.tgz 2184817121 SHA256 55d549fc34f7a9eb96951c7be3216b68f9f960edfdc0997cf8dcffe5c78d66c8 SHA512 84ea227fdca2c427996b0c4d17a0bad6c289a6fbfc267c19f54ebee875e11e6e8d14bb3103599e3b89331c34a153b0a63a5ca8c12f4619420f78f8c4b0c2da96 WHIRLPOOL 6bedfdbcad7f0d7ad4681d51ad865db247d5f264f5fa33e7136fc64c5e83eee30bb2611f39bd7f31b790432e314a7dbea755297ae3fd2b90ccecb7beffb20d79
-DIST parallel_studio_xe_2013_update4_ia32.tgz 1220177902 SHA256 5bd75b2747f4b787b8128a83914b060d156ecdc41236f4100363b7ab4f9f6859 SHA512 968db307e08cd31450200abd41ade1f2b2855f4b5cb19911d03c1cd357cab11cbba814db354452496fcf66fc3fad1423b24f428bd4db07402f12bd63e4d34247 WHIRLPOOL f2b03ebb78960718a15fc69be814eeb7996fdd7575720f4b09cb915086cc757fea188ef5ceb7e37ed00c995e11ae544d8bd55aba8ab2d12530e26b3d23362f3e
-DIST parallel_studio_xe_2013_update4_intel64.tgz 1520767493 SHA256 31383f357b9b7d9c76e727e63427387d9ee42358f5b5df75a0d8766cd318a11d SHA512 497ad8f3473e1d11cdd31dff340a8e6ec1f012e731def084b2072146b5d11db906f85ace53b2223c3fbef949222f73f36783fd697eb7809464f4403c0ac8744a WHIRLPOOL d08447f27aee0f088797968d541fe98e3813a1daf5b87024d37493663238594c3e4e75a8d9636a4059191782f5eae9065d45b7ad2c27e1f73fc74eb110ad399f
diff --git a/sci-libs/mkl/mkl-11.0.3.163.ebuild b/sci-libs/mkl/mkl-11.0.3.163.ebuild
deleted file mode 100644
index fee4df062..000000000
--- a/sci-libs/mkl/mkl-11.0.3.163.ebuild
+++ /dev/null
@@ -1,131 +0,0 @@
-# Copyright 1999-2013 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Header: $
-
-EAPI=5
-
-INTEL_DPN=parallel_studio_xe
-INTEL_DID=3078
-INTEL_DPV=2013_update3
-INTEL_SUBDIR=composerxe
-
-inherit intel-sdp multilib alternatives-2
-
-DESCRIPTION="Intel Math Kernel Library: linear algebra, fft, math functions"
-HOMEPAGE="http://software.intel.com/en-us/articles/intel-mkl/"
-
-IUSE=""
-KEYWORDS="-* ~amd64 ~x86 ~amd64-linux ~x86-linux"
-
-DEPEND=""
-RDEPEND=">=dev-libs/intel-common-13"
-
-CHECKREQS_DISK_BUILD=2500M
-
-INTEL_BIN_RPMS="mkl mkl-devel"
-INTEL_DAT_RPMS="mkl-common"
-
-src_prepare() {
-	chmod u+w -R opt
-}
-
-mkl_add_prof() {
-	local pcname=${1} libs cflags x
-	shift
-	[[ ${pcname} = *int64* ]] && cflags=-DMKL_ILP64
-	cat <<-EOF > ${pcname}.pc
-		prefix=${INTEL_SDP_EDIR}/mkl
-		libdir=\${prefix}/lib/${IARCH}
-		includedir=\${prefix}/include
-		Name: ${pcname}
-		Description: ${DESCRIPTION}
-		Version: ${PV}
-		URL: ${HOMEPAGE}
-		Libs: -L\${libdir} ${libs}
-		Cflags: -I\${includedir} ${cflags}
-	EOF
-	insinto /usr/$(get_libdir)/pkgconfig
-	doins ${pcname}.pc
-	for x in $*; do
-		alternatives_for ${x} ${pcname/-${x}} 0 \
-			/usr/$(get_libdir)/pkgconfig/${x}.pc ${pcname}.pc
-	done
-}
-
-# mkl_prof [_ilp64 or _lp64]
-# help: http://software.intel.com/en-us/articles/intel-mkl-link-line-advisor/
-mkl_prof() {
-	local bits=""
-	if [[ ${IARCH} == intel64 ]]; then
-		bits=_lp64
-		[[ ${1} == int64 ]] && bits=_ilp64
-	fi
-	local gf="-Wl,--start-group -lmkl_gf${bits}"
-	local intel="-Wl,--start-group -lmkl_intel${bits}"
-	local core="-lmkl_core -Wl,--end-group"
-	local prof=mkl${IARCH:((${#IARCH} - 2)):2}
-	[[ ${1} == int64 ]] && prof=${prof}-int64
-	local libs
-
-	libs="${gf} -lmkl_sequential ${core} -lpthread" \
-		mkl_add_prof ${prof}-gfortran blas lapack
-	libs="${intel} -lmkl_sequential ${core} -lpthread" \
-		mkl_add_prof ${prof}-intel blas lapack cblas lapacke
-	libs="${gf} -lmkl_gnu_thread ${core} -fopenmp -lpthread" \
-		mkl_add_prof ${prof}-gfortran-openmp blas lapack
-	libs="${intel} -lmkl_gnu_thread ${core} -fopenmp -lpthread" \
-		mkl_add_prof ${prof}-gcc-openmp cblas lapacke
-	libs="${intel} -lmkl_intel_thread ${core} -openmp -lpthread" \
-		mkl_add_prof ${prof}-intel-openmp blas lapack cblas lapacke
-	libs="-lmkl_rt -lpthread" \
-		mkl_add_prof ${prof}-dynamic blas lapack cblas lapacke
-	libs="-lmkl_rt -liomp5 -lpthread" \
-		mkl_add_prof ${prof}-dynamic-openmp blas lapack cblas lapacke
-
-	# blacs and scalapack
-	local scal="-lmkl_scalapack${bits:-_core}"
-	local blacs="-lmkl_blacs_intelmpi${bits}"
-	core="-lmkl_core ${blacs} -Wl,--end-group"
-
-	libs="${gf} -lmkl_sequential ${core} -lpthread" \
-		mkl_add_prof ${prof}-gfortran-blacs blacs
-	libs="${scal} ${gf} -lmkl_sequential ${core} -lpthread" \
-		mkl_add_prof ${prof}-gfortran-scalapack scalapack
-	libs="${intel} -lmkl_sequential ${core} -lpthread" \
-		mkl_add_prof ${prof}-intel-blacs blacs
-	libs="${scal} ${intel} -lmkl_sequential ${core} -lpthread" \
-		mkl_add_prof ${prof}-intel-scalapack scalapack
-	libs="${gf} -lmkl_gnu_thread ${core} -fopenmp -lpthread" \
-		mkl_add_prof ${prof}-gfortran-openmp-blacs blacs
-	libs="${scal} ${gf} -lmkl_gnu_thread ${core} -fopenmp -lpthread" \
-		mkl_add_prof ${prof}-gfortran-openmp-scalapack scalapack
-	libs="${intel} -lmkl_gnu_thread ${core} -fopenmp -lpthread" \
-		mkl_add_prof ${prof}-gcc-openmp-blacs blacs
-	libs="${scal} ${intel} -lmkl_gnu_thread ${core} -fopenmp -lpthread" \
-		mkl_add_prof ${prof}-gcc-openmp-scalapack scalapack
-	libs="${intel} -lmkl_intel_thread ${core} -liomp5 -lpthread" \
-		mkl_add_prof ${prof}-intel-openmp-blacs blacs
-	libs="${scal} ${intel} -lmkl_intel_thread ${core} -liomp5 -lpthread" \
-		mkl_add_prof ${prof}-intel-openmp-scalapack scalapack
-	libs="-lmkl_rt ${blacs} -lpthread" \
-		mkl_add_prof ${prof}-dynamic-blacs blacs
-	libs="${scal} -lmkl_rt ${blacs} -lpthread" \
-		mkl_add_prof ${prof}-dynamic-scalapack scalapack
-	libs="-lmkl_rt ${blacs} -liomp5 -lpthread" \
-		mkl_add_prof ${prof}-dynamic-openmp-blacs blacs
-	libs="${scal} -lmkl_rt ${blacs} -liomp5 -lpthread" \
-		mkl_add_prof ${prof}-dynamic-openmp-scalapack scalapack
-}
-
-src_install() {
-	intel-sdp_src_install
-	echo -n > 35mkl "LDPATH="
-	for IARCH in ${INTEL_ARCH}; do
-		mkl_prof
-		sed -i -e '/mkl/s/$/:/' 35mkl
-		echo -n >> 35mkl "${INTEL_SDP_EDIR}/mkl/lib/${IARCH}"
-		[[ ${IARCH} == intel64 ]] && mkl_prof int64
-	done
-	echo >> 35mkl
-	doenvd 35mkl
-}
diff --git a/sci-libs/mkl/mkl-11.0.5.192.ebuild b/sci-libs/mkl/mkl-11.0.5.192.ebuild
deleted file mode 100644
index 8476f9482..000000000
--- a/sci-libs/mkl/mkl-11.0.5.192.ebuild
+++ /dev/null
@@ -1,131 +0,0 @@
-# Copyright 1999-2013 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Header: $
-
-EAPI=5
-
-INTEL_DPN=parallel_studio_xe
-INTEL_DID=3266
-INTEL_DPV=2013_update4
-INTEL_SUBDIR=composerxe
-
-inherit intel-sdp multilib alternatives-2
-
-DESCRIPTION="Intel Math Kernel Library: linear algebra, fft, math functions"
-HOMEPAGE="http://software.intel.com/en-us/articles/intel-mkl/"
-
-IUSE=""
-KEYWORDS="-* ~amd64 ~x86 ~amd64-linux ~x86-linux"
-
-DEPEND=""
-RDEPEND=">=dev-libs/intel-common-13"
-
-CHECKREQS_DISK_BUILD=2500M
-
-INTEL_BIN_RPMS="mkl mkl-devel"
-INTEL_DAT_RPMS="mkl-common"
-
-src_prepare() {
-	chmod u+w -R opt
-}
-
-mkl_add_prof() {
-	local pcname=${1} libs cflags x
-	shift
-	[[ ${pcname} = *int64* ]] && cflags=-DMKL_ILP64
-	cat <<-EOF > ${pcname}.pc
-		prefix=${INTEL_SDP_EDIR}/mkl
-		libdir=\${prefix}/lib/${IARCH}
-		includedir=\${prefix}/include
-		Name: ${pcname}
-		Description: ${DESCRIPTION}
-		Version: ${PV}
-		URL: ${HOMEPAGE}
-		Libs: -L\${libdir} ${libs}
-		Cflags: -I\${includedir} ${cflags}
-	EOF
-	insinto /usr/$(get_libdir)/pkgconfig
-	doins ${pcname}.pc
-	for x in $*; do
-		alternatives_for ${x} ${pcname/-${x}} 0 \
-			/usr/$(get_libdir)/pkgconfig/${x}.pc ${pcname}.pc
-	done
-}
-
-# mkl_prof [_ilp64 or _lp64]
-# help: http://software.intel.com/en-us/articles/intel-mkl-link-line-advisor/
-mkl_prof() {
-	local bits=""
-	if [[ ${IARCH} == intel64 ]]; then
-		bits=_lp64
-		[[ ${1} == int64 ]] && bits=_ilp64
-	fi
-	local gf="-Wl,--start-group -lmkl_gf${bits}"
-	local intel="-Wl,--start-group -lmkl_intel${bits}"
-	local core="-lmkl_core -Wl,--end-group"
-	local prof=mkl${IARCH:((${#IARCH} - 2)):2}
-	[[ ${1} == int64 ]] && prof=${prof}-int64
-	local libs
-
-	libs="${gf} -lmkl_sequential ${core} -lpthread" \
-		mkl_add_prof ${prof}-gfortran blas lapack
-	libs="${intel} -lmkl_sequential ${core} -lpthread" \
-		mkl_add_prof ${prof}-intel blas lapack cblas lapacke
-	libs="${gf} -lmkl_gnu_thread ${core} -fopenmp -lpthread" \
-		mkl_add_prof ${prof}-gfortran-openmp blas lapack
-	libs="${intel} -lmkl_gnu_thread ${core} -fopenmp -lpthread" \
-		mkl_add_prof ${prof}-gcc-openmp cblas lapacke
-	libs="${intel} -lmkl_intel_thread ${core} -openmp -lpthread" \
-		mkl_add_prof ${prof}-intel-openmp blas lapack cblas lapacke
-	libs="-lmkl_rt -lpthread" \
-		mkl_add_prof ${prof}-dynamic blas lapack cblas lapacke
-	libs="-lmkl_rt -liomp5 -lpthread" \
-		mkl_add_prof ${prof}-dynamic-openmp blas lapack cblas lapacke
-
-	# blacs and scalapack
-	local scal="-lmkl_scalapack${bits:-_core}"
-	local blacs="-lmkl_blacs_intelmpi${bits}"
-	core="-lmkl_core ${blacs} -Wl,--end-group"
-
-	libs="${gf} -lmkl_sequential ${core} -lpthread" \
-		mkl_add_prof ${prof}-gfortran-blacs blacs
-	libs="${scal} ${gf} -lmkl_sequential ${core} -lpthread" \
-		mkl_add_prof ${prof}-gfortran-scalapack scalapack
-	libs="${intel} -lmkl_sequential ${core} -lpthread" \
-		mkl_add_prof ${prof}-intel-blacs blacs
-	libs="${scal} ${intel} -lmkl_sequential ${core} -lpthread" \
-		mkl_add_prof ${prof}-intel-scalapack scalapack
-	libs="${gf} -lmkl_gnu_thread ${core} -fopenmp -lpthread" \
-		mkl_add_prof ${prof}-gfortran-openmp-blacs blacs
-	libs="${scal} ${gf} -lmkl_gnu_thread ${core} -fopenmp -lpthread" \
-		mkl_add_prof ${prof}-gfortran-openmp-scalapack scalapack
-	libs="${intel} -lmkl_gnu_thread ${core} -fopenmp -lpthread" \
-		mkl_add_prof ${prof}-gcc-openmp-blacs blacs
-	libs="${scal} ${intel} -lmkl_gnu_thread ${core} -fopenmp -lpthread" \
-		mkl_add_prof ${prof}-gcc-openmp-scalapack scalapack
-	libs="${intel} -lmkl_intel_thread ${core} -liomp5 -lpthread" \
-		mkl_add_prof ${prof}-intel-openmp-blacs blacs
-	libs="${scal} ${intel} -lmkl_intel_thread ${core} -liomp5 -lpthread" \
-		mkl_add_prof ${prof}-intel-openmp-scalapack scalapack
-	libs="-lmkl_rt ${blacs} -lpthread" \
-		mkl_add_prof ${prof}-dynamic-blacs blacs
-	libs="${scal} -lmkl_rt ${blacs} -lpthread" \
-		mkl_add_prof ${prof}-dynamic-scalapack scalapack
-	libs="-lmkl_rt ${blacs} -liomp5 -lpthread" \
-		mkl_add_prof ${prof}-dynamic-openmp-blacs blacs
-	libs="${scal} -lmkl_rt ${blacs} -liomp5 -lpthread" \
-		mkl_add_prof ${prof}-dynamic-openmp-scalapack scalapack
-}
-
-src_install() {
-	intel-sdp_src_install
-	echo -n > 35mkl "LDPATH="
-	for IARCH in ${INTEL_ARCH}; do
-		mkl_prof
-		sed -i -e '/mkl/s/$/:/' 35mkl
-		echo -n >> 35mkl "${INTEL_SDP_EDIR}/mkl/lib/${IARCH}"
-		[[ ${IARCH} == intel64 ]] && mkl_prof int64
-	done
-	echo >> 35mkl
-	doenvd 35mkl
-}
diff --git a/sci-libs/mkl/mkl-11.1.0.080.ebuild b/sci-libs/mkl/mkl-11.1.0.080-r1.ebuild
index c67452788..7f8eb0770 100644
--- a/sci-libs/mkl/mkl-11.1.0.080.ebuild
+++ b/sci-libs/mkl/mkl-11.1.0.080-r1.ebuild
@@ -45,12 +45,13 @@ mkl_add_prof() {
 	cat <<-EOF > ${pcname}.pc
 		prefix=${INTEL_SDP_EDIR}/mkl
 		libdir=\${prefix}/lib/${IARCH}
+		libdir_comp=${INTEL_SDP_EDIR}/compiler/lib/${IARCH}
 		includedir=\${prefix}/include
 		Name: ${pcname}
 		Description: ${DESCRIPTION}
 		Version: ${PV}
 		URL: ${HOMEPAGE}
-		Libs: -L\${libdir} ${libs}
+		Libs: -L\${libdir} -L\${libdir_comp} ${libs}
 		Cflags: -I\${includedir} ${cflags}
 	EOF
 	insinto /usr/$(get_libdir)/pkgconfig
diff --git a/sci-libs/xraylib/ChangeLog b/sci-libs/xraylib/ChangeLog
new file mode 100644
index 000000000..0698f696d
--- /dev/null
+++ b/sci-libs/xraylib/ChangeLog
@@ -0,0 +1,7 @@
+# ChangeLog for sci-libs/xraylib
+# Copyright 1999-2013 Gentoo Foundation; Distributed under the GPL v2
+# $Header: $
+
+  08 Dec 2013; Justin Lecher <jlec@gentoo.org> xraylib-2.16.0.ebuild:
+  Make python stuff optional under USE=python
+
diff --git a/sci-libs/xraylib/Manifest b/sci-libs/xraylib/Manifest
new file mode 100644
index 000000000..eaaa7282f
--- /dev/null
+++ b/sci-libs/xraylib/Manifest
@@ -0,0 +1 @@
+DIST xraylib-2.16.0.tar.gz 39669898 SHA256 84dcf6b3171d17ac8f78ac85d39c1a0e1f8567e69eac8552ece0cea5c85c2733 SHA512 0232bea0f934cb13fd30a9964aa52fc8eeae82fc40c263f7196041d58b272c99e177254268b43f091361b51c0046bedb9dfce88684a01c9da0ad33878b2b753c WHIRLPOOL 3e44e524380657a940a77ed210cf054a00c8b636cece794a6d2bdc32cce82f8bdd1c3eb77c5eae80d21a7e9c73ab4c104414e60c57147cfbf02d8b279db7aeeb
diff --git a/sci-libs/xraylib/metadata.xml b/sci-libs/xraylib/metadata.xml
new file mode 100644
index 000000000..a592314d3
--- /dev/null
+++ b/sci-libs/xraylib/metadata.xml
@@ -0,0 +1,38 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<pkgmetadata>
+  <herd>sci</herd>
+  <maintainer>
+    <email>cjk34@cam.ac.uk</email>
+  </maintainer>
+  <longdescription lang="en">
+  Quantitative estimate of elemental composition by spectroscopic and imaging
+  techniques using X-ray fluorescence requires the availability of accurate data
+  of X-ray interaction with matter. Although a wide number of computer codes
+  and data sets are reported in literature, none of them is presented in the
+  form of freely available library functions which can be easily included in
+  software applications for X-ray fluorescence. This work presents a compilation
+  of data sets from different published works and an xraylib interface in the
+  form of callable functions. Although the target applications are on X-ray
+  fluorescence, cross sections of interactions like photoionization, coherent
+  scattering and Compton scattering, as well as form factors and anomalous
+  scattering functions, are also available.
+
+  xraylib provides access to some of the most respected databases of physical
+  data in the field of x-rays. The core of xraylib is a library, written in ANSI
+  C, containing over 40 functions to be used to retrieve data from these
+  databases. This C library can be directly linked with any program written in
+  C, C++ or Objective-C. Furthermore, the xraylib package contains bindings to
+  several popular programming languages: Fortran 2003, Perl, Python, Java, IDL,
+  Lua and .NET, as well as a command-line utility which can be used as a
+  pocket-calculator. Although not officially supported, xraylib has been
+  reported to be useable from within Matlab and LabView.
+  
+  Reference: T. Schoonjans, A. Brunetti, B. Golosio, M. Sanchez del Rio, 
+  V. A. Solé, C. Ferrero and L. Vincze, "The xraylib library for X-ray--matter 
+  interactions. Recent developments", Spectrochimica Acta B 66 (2011) 776-784 
+  ( doi: http://dx.doi.org/10.1016/j.sab.2011.09.011 )
+  </longdescription>
+  <use>
+  </use>
+</pkgmetadata>
diff --git a/sci-libs/xraylib/xraylib-2.16.0.ebuild b/sci-libs/xraylib/xraylib-2.16.0.ebuild
new file mode 100644
index 000000000..4db465bb3
--- /dev/null
+++ b/sci-libs/xraylib/xraylib-2.16.0.ebuild
@@ -0,0 +1,84 @@
+# Copyright 1999-2013 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: $
+
+EAPI=5
+
+AUTOTOOLS_AUTORECONF=true
+FORTRAN_NEEDED=fortran
+FORTRAN_STANDARD=2003
+PYTHON_COMPAT=( python{2_6,2_7} ) # python 3 supported by github master
+
+inherit eutils autotools-utils python-single-r1 java-pkg-opt-2 fortran-2
+
+DESCRIPTION="A library for X-ray matter interaction cross sections for X-ray fluorescence applications"
+HOMEPAGE="https://github.com/tschoonj/xraylib"
+SRC_URI="https://github.com/tschoonj/xraylib/archive/${P}.tar.gz"
+
+LICENSE="BSD"
+SLOT="0"
+KEYWORDS="~amd64"
+IUSE="examples fortran java lua perl python"
+
+REQUIRED_USE="python? ( ${PYTHON_REQUIRED_USE} )"
+
+RDEPEND="
+	java? ( >=virtual/jre-1.4 )
+	lua? ( dev-lang/lua )
+	perl? ( dev-lang/perl )
+	python? ( ${PYTHON_DEPS} )"
+
+DEPEND="${RDEPEND}
+	java? ( >=virtual/jdk-1.4 )"
+
+S="${WORKDIR}/${PN}-${P}"
+
+DOCS=(AUTHORS BUGS Changelog README TODO)
+
+pkg_setup() {
+	fortran-2_pkg_setup
+	java-pkg-opt-2_pkg_setup
+	use python && python-single-r1_pkg_setup
+}
+
+src_prepare() {
+	java-pkg-opt-2_src_prepare
+	autotools-utils_src_prepare
+}
+
+src_configure() {
+	local myeconfargs=(
+		--disable-idl
+		$(use_enable fortran fortran2003)
+		$(use_enable java)
+		$(use_enable lua)
+		$(use_enable perl)
+		$(use_enable python)
+		$(use_enable python python-integration)
+	)
+	autotools-utils_src_configure
+}
+
+src_compile() {
+	# see https://github.com/tschoonj/xraylib/issues/11
+	if use fortran || use java; then
+		MAKEOPTS+=" -j1"
+	fi
+	autotools-utils_src_compile
+}
+
+src_install() {
+	autotools-utils_src_install
+
+	if use examples; then
+		insinto /usr/share/doc/${PF}/examples
+		doins example/*.c example/*.cpp
+		use java && doins example/*.java
+		use lua && doins example/*.lua
+		use perl && doins example/*.pl
+		use python && doins example/*.py
+		docompress -x /usr/share/doc/${PF}/examples # Don't compress examples
+	fi
+
+	use java && java-pkg_regso /usr/share/xraylib/java/libxraylib.so
+}