Imported to tree

15 files changed, 0 insertions, 1132 deletions

diff --git a/sci-libs/vtk/ChangeLog b/sci-libs/vtk/ChangeLog
deleted file mode 100644
index 44536c1da..000000000
--- a/sci-libs/vtk/ChangeLog
+++ /dev/null
@@ -1,334 +0,0 @@
-# ChangeLog for sci-libs/vtk
-# Copyright 1999-2010 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-libs/vtk/ChangeLog,v 1.76 2010/06/17 02:25:18 jsbronder Exp $
-
-*vtk-5.6.0-r3 (09 Jul 2010)
-
-  09 Jul 2010; François Bissey <f.r.bissey@massey.ac.nz>
-  +files/vtk-5.0.3-mpi.patch, +files/vtk-5.0.4-gcc4.3.patch,
-  +files/vtk-5.2.0-tcl-install.patch,
-  +files/vtk-5.4.2-boost-property_map.patch, +files/vtk-5.4.2-cg-path.patch,
-  +files/vtk-5.4.2-libpng14.patch, +vtk-5.6.0-r3.ebuild,
-  +files/vtk-5.6.0-R.patch, +files/vtk-5.6.0-boost-property_map.patch,
-  +files/vtk-5.6.0-cg-path.patch, +files/vtk-5.6.0-libpng14.patch,
-  +files/vtk-5.6.0-odbc.patch, +metadata.xml:
-  Enhanced vtk-5.6.0: includes support for mysql/postgres/odbc/ffmpeg.
-
-  17 Jun 2010; Justin Bronder <jsbronder@gentoo.org> vtk-5.4.2-r1.ebuild:
-  Remove sys-cluster/lam-mpi handling, see #324415.
-
-  09 Jun 2010; Justin Lecher <jlec@gentoo.org> -vtk-5.4.2.ebuild:
-  removed old version which having problems with PYTHON ABIs stuff
-
-  07 Jun 2010; Justin Lecher <jlec@gentoo.org> vtk-5.6.0-r2.ebuild:
-  Fixed ogg -> theora USE transition
-
-  31 May 2010; Justin Lecher <jlec@gentoo.org> metadata.xml:
-  Added myself as maintainer
-
-*vtk-5.6.0-r2 (29 May 2010)
-
-  29 May 2010; Justin Lecher <jlec@gentoo.org> -vtk-5.6.0-r1.ebuild,
-  +vtk-5.6.0-r2.ebuild:
-  Don't use bundled libtheora, moved USE ogg -> theora
-
-  29 May 2010; Justin Lecher <jlec@gentoo.org> vtk-5.6.0-r1.ebuild:
-  Added missing DEPS
-
-  29 May 2010; Justin Lecher <jlec@gentoo.org> vtk-5.6.0-r1.ebuild:
-  Corrected version of cmake in DEPEND for mpi
-
-*vtk-5.6.0-r1 (28 May 2010)
-
-  28 May 2010; Justin Lecher <jlec@gentoo.org> vtk-5.4.2.ebuild,
-  files/vtk-5.4.2-boost-property_map.patch, -vtk-5.6.0.ebuild,
-  +vtk-5.6.0-r1.ebuild, +files/vtk-5.6.0-R.patch,
-  files/vtk-5.6.0-boost-property_map.patch:
-  Fixed correct detection R libs
-
-*vtk-5.6.0 (28 May 2010)
-
-  28 May 2010; Justin Lecher <jlec@gentoo.org> vtk-5.4.2-r1.ebuild,
-  +vtk-5.6.0.ebuild, +files/vtk-5.6.0-boost-property_map.patch,
-  +files/vtk-5.6.0-cg-path.patch, +files/vtk-5.6.0-libpng14.patch:
-  Version Bump #321505; Added support for ogg R; prelimary support for
-  PREFIX
-
-  22 May 2010; Justin Lecher <jlec@gentoo.org> vtk-5.4.2.ebuild,
-  vtk-5.4.2-r1.ebuild:
-  Add x11-libs/qt-sql to deps, #301684
-
-  25 Apr 2010; Justin Lecher <jlec@gentoo.org> vtk-5.4.2-r1.ebuild:
-  Python ABI fixes, #316229
-
-  26 Mar 2010; Ben de Groot <yngwin@gentoo.org> vtk-5.4.2.ebuild,
-  vtk-5.4.2-r1.ebuild:
-  Don't inherit unused qt3 eclass (bug #310669)
-
-  11 Mar 2010; Samuli Suominen <ssuominen@gentoo.org> vtk-5.4.2-r1.ebuild,
-  +files/vtk-5.4.2-libpng14.patch:
-  Fix building with libpng14.
-
-  11 Feb 2010; Justin Lecher <jlec@gentoo.org> vtk-5.4.2.ebuild,
-  vtk-5.4.2-r1.ebuild:
-  Removed qt3 support as it is no longer in the tree
-
-  21 Jan 2010; Markus Dittrich <markusle@gentoo.org> vtk-5.4.2-r1.ebuild,
-  +files/vtk-5.4.2-boost-property_map.patch:
-  Added patch to allow compilation against boost-1.42 (fixes #301684).
-
-  16 Jan 2010; Markus Dittrich <markusle@gentoo.org> vtk-5.4.2-r1.ebuild:
-  Updated handling of mycmakeargs from cmake-utils.eclass.
-
-*vtk-5.4.2-r1 (19 Dec 2009)
-
-  19 Dec 2009; Markus Dittrich <markusle@gentoo.org> +vtk-5.4.2-r1.ebuild:
-  New revision uses cmake-utils eclass and is significantly cleaned up.
-  This should have also fixed bugs #295053 and #287591.
-  Thanks much to Francois Bissey <f.r.bissey@massey.ac.nz> for his help.
-
-  17 Dec 2009; Markus Dittrich <markusle@gentoo.org> vtk-5.4.2.ebuild:
-  Updated dependency on cmake to >=2.6 (fixes bug #295531).
-
-  04 Dec 2009; Markus Dittrich <markusle@gentoo.org> vtk-5.4.2.ebuild:
-  Added short notice regarding possible parallel make issues per bug
-  #244896.
-
-  24 Nov 2009; Markus Dittrich <markusle@gentoo.org> vtk-5.4.2.ebuild:
-  Removed boost from RDEPEND (fixes bug #293083).
-
-  18 Sep 2009; Petteri Räty <betelgeuse@gentoo.org> -vtk-5.0.4.ebuild,
-  -vtk-5.2.0-r1.ebuild:
-  Remove old versions using built_with_use.
-
-  01 Sep 2009; Markus Dittrich <markusle@gentoo.org> vtk-5.4.2.ebuild:
-  Added missing dependency on qt-opengl (fixes bug #283181).
-
-*vtk-5.4.2 (17 Jul 2009)
-
-  17 Jul 2009; Markus Dittrich <markusle@gentoo.org> -vtk-5.0.3.ebuild,
-  +files/vtk-5.4.2-cg-path.patch, +vtk-5.4.2.ebuild:
-  Version bump (fixes bug #269040). Also removed old version.
-
-  27 Oct 2008; Markus Dittrich <markusle@gentoo.org> vtk-5.2.0-r1.ebuild:
-  Attempt to fix sandbox violations (see bug #244378).
-
-*vtk-5.2.0-r1 (05 Oct 2008)
-
-  05 Oct 2008; Markus Dittrich <markusle@gentoo.org> 
-  +files/vtk-5.2.0-tcl-install.patch, -vtk-5.2.0.ebuild,
-  +vtk-5.2.0-r1.ebuild:
-  Fixed improper install location of support files (see bug #239553).
-
-*vtk-5.2.0 (01 Oct 2008)
-
-  01 Oct 2008; Markus Dittrich <markusle@gentoo.org> +vtk-5.2.0.ebuild:
-  Version bump (fixes bug #238883). Thanks much to Steve Yin
-  <steve@chinavfx.net> for his ebuild.
-
-  07 Aug 2008; Ulrich Mueller <ulm@gentoo.org> metadata.xml:
-  Add USE flag description to metadata wrt GLEP 56.
-
-  28 Jul 2008; Carsten Lohrke <carlo@gentoo.org> vtk-5.0.3.ebuild:
-  QA: Get rid of deprecated qt?_min_version().
-
-  27 Jul 2008; Carsten Lohrke <carlo@gentoo.org> vtk-5.0.4.ebuild:
-  Fix broken split Qt 4.4 dependencies, cf. bug 217161 comment 11.
-
-  08 Jul 2008; Thomas Anderson <gentoofan23@gentoo.org> vtk-5.0.4.ebuild:
-  Add a qt-gui dependency, it really is needed.
-
-  03 Jul 2008; Thomas Anderson <gentoofan23@gentoo.org> vtk-5.0.4.ebuild:
-  Migrate Dependencies to permit Split QT 4.4 to satisfy dependencies, bug
-  #217189
-
-  24 May 2008; Markus Dittrich <markusle@gentoo.org>
-  +files/vtk-5.0.4-gcc4.3.patch, vtk-5.0.4.ebuild:
-  Added gcc-4.3 compatibility patch (see bug #223383). Thanks much to 
-  Bert Karwatzki <spasswolf@web.de> for his patch.
-
-  09 Mar 2008; Markus Dittrich <markusle@gentoo.org> vtk-5.0.4.ebuild:
-  Backported support for tcl/tk-8.5 from cvs head (fixes bug 212700). 
-  Thanks much to Pacho Ramos <pacho@condmat1.ciencias.uniovi.es> for 
-  his patch.
-
-*vtk-5.0.4 (06 Mar 2008)
-
-  06 Mar 2008; Markus Dittrich <markusle@gentoo.org> +vtk-5.0.4.ebuild:
-  Version bump.
-
-  29 Feb 2008; Markus Dittrich <markusle@gentoo.org> vtk-5.0.3.ebuild:
-  Fixed bogus install location (see bug #211819). Thanks much to
-  Matthias Langer <mlangc@gmx.at> for his patch.
-
-  21 Feb 2008; Markus Dittrich <markusle@gentoo.org>
-  -files/vtk-5.0.1-python2.5-gentoo.patch, -files/vtk-5.0.3-lammpi.patch,
-  +files/vtk-5.0.3-mpi.patch, vtk-5.0.3.ebuild:
-  Removed support for mpich and added support for mpich2, openmpi, and
-  lam-mpi. Also fixed some QA issues and added qt4 eclass.
-
-  19 Aug 2007; Markus Dittrich <markusle@gentoo.org> vtk-5.0.3.ebuild:
-  Fixed incomplete RDEPEND.
-
-  01 Aug 2007; Markus Dittrich <markusle@gentoo.org> vtk-5.0.3.ebuild:
-  Added LGPL-2 to LICENSE since it is needed for gl2ps (see bug 146019).
-
-  22 Jul 2007; Donnie Berkholz <dberkholz@gentoo.org>; vtk-5.0.3.ebuild:
-  Drop virtual/x11 references.
-
-  11 Jun 2007; Petteri Räty <betelgeuse@gentoo.org> -vtk-5.0.2.ebuild:
-  Remove old version.
-
-  11 Jun 2007; Petteri Räty <betelgeuse@gentoo.org> vtk-5.0.3.ebuild:
-  Add java? ( >=virtual/jre-1.5 ) to RDEPEND.
-
-  28 May 2007; Markus Dittrich <markusle@gentoo.org> vtk-5.0.3.ebuild:
-  Added VTKHOME as exported environmental variable.
-
-  08 May 2007; Markus Dittrich <markusle@gentoo.org> vtk-5.0.3.ebuild:
-  Re-added compile flag for javac needed on amd64 (see bug #177506).
-
-  06 May 2007; Markus Dittrich <markusle@gentoo.org>
-  +files/vtk-5.0.3-lammpi.patch, vtk-5.0.3.ebuild:
-  Added patch fixing cmake files to properly detect and add lam-mpi
-  libraries.
-
-  04 May 2007; Markus Dittrich <markusle@gentoo.org> vtk-5.0.3.ebuild:
-  Check for qt3support useflag when building the examples under qt4
-  (see bug #176847).
-
-  01 May 2007; Markus Dittrich <markusle@gentoo.org> metadata.xml,
-  vtk-5.0.3.ebuild:
-  Removed explicit java CLASSPATH and added the friendly java folks
-  to metadata (see bug #176547).
-
-*vtk-5.0.3 (23 Apr 2007)
-
-  23 Apr 2007; Markus Dittrich <markusle@gentoo.org>
-  -files/vtk-qt-gentoo.patch, -vtk-5.0.0.ebuild, -vtk-5.0.1.ebuild,
-  +vtk-5.0.3.ebuild:
-  Version bump and removed old versions. Thanks much to Sebastien 
-  Fabbro <bicatali@gentoo.org> for his ebuild.
-
-  16 Apr 2007; Christian Faulhammer <opfer@gentoo.org> vtk-5.0.0.ebuild:
-  moved from USE tcltk to tk, see bug 17808
-
-*vtk-5.0.2 (02 Dec 2006)
-
-  02 Dec 2006; Markus Dittrich <markusle@gentoo.org> +vtk-5.0.2.ebuild:
-  Version bump.
-
-  18 Nov 2006; Markus Dittrich <markusle@gentoo.org> vtk-5.0.1.ebuild:
-  Added -j1 back to ebuild since some people still experience problems
-  with parallel builds (see discussion on bug #146767).
-
-  14 Oct 2006; Joshua Nichols <nichoj@gentoo.org> vtk-5.0.0.ebuild:
-  Added call to java-pkg_pkg_setup, for bug #142708
-
-  23 Sep 2006; Markus Dittrich <markusle@gentoo.org>
-  +files/vtk-5.0.1-python2.5-gentoo.patch, vtk-5.0.1.ebuild:
-  Added patch to fix compile problems with python-2.5 
-  (see bug #148727).
-
-  08 Sep 2006; Markus Dittrich <markusle@gentoo.org>
-  +files/vtk-qt-gentoo.patch, -files/vtk-qt3-qt4-gentoo.patch,
-  vtk-5.0.0.ebuild, vtk-5.0.1.ebuild:
-  Renamed the qt patch in an effort to get rid of the executable
-  permissions. Also cleaned up the ebuilds some.
-
-  08 Sep 2006; Markus Dittrich <markusle@gentoo.org>
-  files/vtk-qt3-qt4-gentoo.patch, -files/vtk-4.2.6-gcc34.patch,
-  -vtk-4.2.6.ebuild:
-  Removed old version since it doesn't build any more. Also fixed
-  permissions for the vtk-qt patch (see bug #146826).
-
-  20 Jul 2006; Markus Dittrich <markusle@gentoo.org> vtk-5.0.1.ebuild:
-  Moved to new java system. Removed -j1 from emake since it works 
-  fine here with -j2.
-
-*vtk-5.0.1 (09 Jul 2006)
-
-  09 Jul 2006; Markus Dittrich <markusle@gentoo.org> vtk-4.2.6.ebuild,
-  vtk-5.0.0.ebuild, +vtk-5.0.1.ebuild:
-  Version bump. Also, split tcltk USE flag into tcl and tk and moved
-  to new style virtual/jdk.
-
-  23 Jun 2006; Markus Dittrich <markusle@gentoo.org> vtk-5.0.0.ebuild:
-  Added a warning to the ebuild that qt4 is the default in case both 
-  qt3 and qt4 are selected as use flags (see bug #137658).
-
-  11 Jun 2006; Markus Dittrich <markusle@gentoo.org> vtk-5.0.0.ebuild:
-  Fix RDEPEND and cmake configuration such that tcl/tk is only 
-  pulled in and used if USE=tcltk. This closes bug #136324.
-
-  27 Apr 2006; Alec Warner <antarus@gentoo.org> Manifest:
-  Fixing SHA256 digest, pass four
-
-  21 Apr 2006; Markus Dittrich <markusle@gentoo.org> vtk-5.0.0.ebuild:
-  Depend on cmake-2.2.x to be able to properly compile against QT4.
-  This fixes bug #130471.
-
-  07 Apr 2006; Markus Dittrich <markusle@gentoo.org> ChangeLog:
-  Removed from package.mask after testing.
-
-  27 Mar 2006; Markus Dittrich <markusle@gentoo.org> vtk-5.0.0.ebuild:
-  Added proper JAVA_AWT_LIBRARY cmake variable for amd64 platform.
-  Thanks to Sebastiaan <s.breedveld@erasmusmc.nl> for pointing this
-  out (c.f. bug #123178).
-
-  26 Mar 2006; Markus Dittrich <markusle@gentoo.org>
-  +files/vtk-qt3-qt4-gentoo.patch, vtk-5.0.0.ebuild:
-  Added a small fix for java compilation on amd64 as detailed
-  in bug #123178. Thanks to Sebastiaan <s.breedveld@erasmusmc.nl> for 
-  the fix. Also enabled compilation of vtk against either QT3 or QT4.
-
-  06 Mar 2006; Markus Dittrich <markusle@gentoo.org> vtk-5.0.0.ebuild:
-  Fixed some QT3 issues and forced -j1 during emake. Thanks
-  much to Sebastiaan <s.breedveld@erasmusmc.nl> for his fixes
-  and testing.
-
-*vtk-5.0.0 (05 Mar 2006)
-
-  05 Mar 2006; Markus Dittrich <markusle@gentoo.org> +vtk-5.0.0.ebuild:
-  Version bump. Many thanks to Toon Verstraelen 
-  <Toon.Verstraelen@UGent.be> and Sebastiaan 
-  <s.breedveld@erasmusmc.nl> for their ebuilds and patches.
-  This fixes bug #123178.
-
-  26 Feb 2006; Markus Dittrich <markusle@gentoo.org> vtk-4.2.6.ebuild:
-  Added cmake command line flag to prevent insecure RUNPATHS 
-  (c.f. bug #122875).
-
-  22 Jan 2006; Markus Dittrich <markusle@gentoo.org> vtk-4.2.6.ebuild:
-  Fix dependencies for modular X and replace instances of lib with
-  $(get_libdir).
-
-  17 Jan 2006; Markus Dittrich <markusle@gentoo.org> metadata.xml:
-  Changed maintainer to Markus Dittrich <markusle@gentoo.org>.
-
-  19 Dec 2005; Markus Dittrich <markusle@gentoo.org> vtk-4.2.6.ebuild:
-  Use python eclass functions to determine installed python version.
-
-  18 Dec 2005; Markus Dittrich <markusle@gentoo.org> vtk-4.2.6.ebuild:
-  Fixed compilation problems when using cmake-2.2.x and when compiling against
-  python 2.4.x. Also corrected installation path of vtk jar file. This fixes
-  bugs #112119, #103343, #113597.
-
-  08 Oct 2005; Thomas Matthijs <axxo@gentoo.org> vtk-4.2.6.ebuild:
-  use java-pkg_dojar not dojar
-
-  24 Aug 2005; Patrick Kursawe <phosphan@gentoo.org> vtk-4.2.6.ebuild:
-  No longer using cp -a (bug #103487)
-
-  20 Aug 2005; Olivier Fisette <ribosome@gentoo.org> vtk-4.2.6.ebuild:
-  Removed unused "data" USE flag (fixes bug #100418).
-
-  03 Jun 2005; Patrick Dawson <pkdawson@gentoo.org> vtk-4.2.6.ebuild:
-  Typo fix.
-
-*vtk-4.2.6 (10 May 2005)
-
-  10 May 2005; Patrick Dawson <pkdawson@gentoo.org>
-  +files/vtk-4.2.6-gcc34.patch, +vtk-4.2.6.ebuild:
-  Initial import. See bug #25335.
-
diff --git a/sci-libs/vtk/Manifest b/sci-libs/vtk/Manifest
deleted file mode 100644
index ebe384c6d..000000000
--- a/sci-libs/vtk/Manifest
+++ /dev/null
@@ -1,17 +0,0 @@
-AUX vtk-5.0.3-mpi.patch 2653 RMD160 16c80c11c88cd4a671968da9ef3a29c67a979648 SHA1 c1979686901883aa05091845c05235ce8e24e89f SHA256 dd03a1e55674e6f0c3740b996e6a81a68a6e253c5dac60cf0f2fd2e3ead1dcf3
-AUX vtk-5.0.4-gcc4.3.patch 1222 RMD160 28a724ce4e999e68482bfcadc3e776ef37a1e6a6 SHA1 5db37dabd42dca1d93e483e2fd3356fb5a2c653e SHA256 66627b05fd0f71a51b1f5645edaaa369d11896245598acdb3a30818ec716806f
-AUX vtk-5.2.0-tcl-install.patch 580 RMD160 e3654b90212a4f48f707cd4cfaf6069b9cbc4d49 SHA1 94269da0a6d83312d0fc00c3f7adf964531a7d20 SHA256 7373a02d9408f59546486b50efb8934fc2fa14067928e27bd46b2691b80d2fc6
-AUX vtk-5.4.2-boost-property_map.patch 7739 RMD160 98e9bc2431264ad5692b73dc05e54afa697e4108 SHA1 f38f98e9e28a51bb0553b5792cdde39a2c319b3d SHA256 5cbedc7afde2a3515a0bf580927c6a3a0d5b10efa39e649610b0f00a881a4119
-AUX vtk-5.4.2-cg-path.patch 1112 RMD160 8b4dca2322f62ed005585ed35cf5e11bc7ea0614 SHA1 903cd304bda40b64825ca0e806cd4d7c738f7165 SHA256 4097db18c46e1e27b6213ef7c82af07144b5a88ac19bdcf645ad7e8264cc9e10
-AUX vtk-5.4.2-libpng14.patch 548 RMD160 14217aaaad0b1d44d25574084ee2d3c75d52fbec SHA1 0da1e3168daffd3be3154102d8728135a596f707 SHA256 0aa999ba22804a9c3fe13488c0a014d45acf2a958d9a7336d38ae84e96addbda
-AUX vtk-5.6.0-R.patch 2463 RMD160 be1ca5c2bd56ce2bf14d23817c1fe69901503345 SHA1 c08a10926064536f06e405b57ece07738896787d SHA256 ffdb077883fd054a1daefa9f1a073877f4f00a5fd4f0fc5bb7021feae5ad2e97
-AUX vtk-5.6.0-boost-property_map.patch 547 RMD160 3ae309e296febc8a5c5d86795fd7766fe12dcdf8 SHA1 e97b4273d94c1647c959469f6f1829101fabb108 SHA256 de594eb23b9a7c18c4c6bb67b507dd627e580fcc7e2ba8c151da94bf2949d3f1
-AUX vtk-5.6.0-cg-path.patch 1106 RMD160 a6cb9f4855dfe417d83e7bba04a02da88af869a6 SHA1 fa5afd4b1a943f255e2f20fa35f440518f9d9d95 SHA256 7ad4eb9a82664a2e9c51d8763e594634027051b54ce48bb1c2fca6d1a42635c9
-AUX vtk-5.6.0-libpng14.patch 734 RMD160 d54626d332130fe242b3a5b1300a650e45763d29 SHA1 e6480b68a14345d7dfa78f6d37ff7301366d99d8 SHA256 81565709c8cfb4df3c28d69df8094d15923d824345330ab5ba101a9780e6e9f9
-AUX vtk-5.6.0-odbc.patch 328 RMD160 888680f3e503f8ce624c73df9bb0402309c1384b SHA1 02022f5f345ccfe8a13d99201828edb0371d7cc5 SHA256 eca7a508fcd07eb6d40e609e3670d12ce2d2d39dda11b60f418acd279ca03c25
-DIST vtk-5.6.0.tar.gz 20709970 RMD160 b7abf3b9bb14a3db81608c7aa2721935ae653295 SHA1 355209c485304f1b0feefcda3585d45217ffd230 SHA256 2987938ad906c5fd30ddbf60889f899d1dd8c61d80320c55ac1acadc00a95d3e
-DIST vtkDocHtml-5.6.0.tar.gz 103149113 RMD160 da6a562345c4c143470ddcc8b926820eec2a41cb SHA1 ce7c3ea6c6b674cef0bdd2c2aa036f576c61a477 SHA256 330ab1de0963bdcd0d0d1dbcd374a579874d867bff4b298d65d46855baf2d0c2
-DIST vtkdata-5.6.0.tar.gz 76716069 RMD160 8499816f6d714408c0f7f584fb4d781f4426e444 SHA1 e0aa26dafd653da1db21fc97ce15aa0599d9c5ad SHA256 e6eed8e5c8d8410d7c7cf007de8c5b56bde77d38fa0522c1ac7751138323c9cf
-EBUILD vtk-5.6.0-r3.ebuild 7118 RMD160 599b05a244c7d87e707aaa0a548a9824a15f1492 SHA1 fd7f0aeada8216b34a39f361ef1d08aa578d6ac7 SHA256 781b490b5a749c0c92884bc0298283a20a14244e5ccbe8052a20d0908c22d7b0
-MISC ChangeLog 13190 RMD160 faef3e143fba76a1eb202f394642c341aabe9429 SHA1 8c6cac31ba6b9173a3512c39945878ea4c393ebb SHA256 2397a90ff18fd0cfcbf39a84b47d3621c3d42e919cb2c3a6f0244e026018e536
-MISC metadata.xml 574 RMD160 ccd927f3a387710bbf53f3f0f88c971dc814c605 SHA1 8160c080306039e0b3b18ced75ae6b81b8590ddc SHA256 9a3ca872da01db519865e7753e9c0922fe56972f4d6e27cbf5622afd41d23300
diff --git a/sci-libs/vtk/files/vtk-5.0.3-mpi.patch b/sci-libs/vtk/files/vtk-5.0.3-mpi.patch
deleted file mode 100644
index fec1d67bd..000000000
--- a/sci-libs/vtk/files/vtk-5.0.3-mpi.patch
+++ /dev/null
@@ -1,74 +0,0 @@
-diff -Naur VTK/Parallel/CMakeLists.txt VTK.new/Parallel/CMakeLists.txt
---- VTK/Parallel/CMakeLists.txt	2007-03-28 15:38:46.000000000 -0500
-+++ VTK.new/Parallel/CMakeLists.txt	2008-02-21 15:16:04.000000000 -0500
-@@ -78,6 +78,8 @@
- 
- IF (VTK_USE_MPI)
-   INCLUDE (${CMAKE_ROOT}/Modules/FindMPI.cmake)
-+  INCLUDE(${VTK_SOURCE_DIR}/Parallel/FindLAMMPI.cmake)
-+  INCLUDE(${VTK_SOURCE_DIR}/Parallel/FindOpenmpi.cmake)
-   SET ( Kit_SRCS
-     ${Kit_SRCS}
-     vtkMPICommunicator.cxx
-@@ -94,6 +96,18 @@
-   IF (MPI_EXTRA_LIBRARY)   
-     SET(KIT_LIBS ${KIT_LIBS} "${MPI_EXTRA_LIBRARY}")   
-   ENDIF (MPI_EXTRA_LIBRARY) 
-+  IF (LAMMPI_LIBRARY) 
-+    SET(KIT_LIBS ${KIT_LIBS} "${LAMMPI_LIBRARY}")   
-+  ENDIF (LAMMPI_LIBRARY)   
-+  IF (LAMMPI_EXTRA_LIBRARY)   
-+    SET(KIT_LIBS ${KIT_LIBS} "${LAMMPI_EXTRA_LIBRARY}")   
-+  ENDIF (LAMMPI_EXTRA_LIBRARY) 
-+  IF (OPENMPI_LIBRARY) 
-+    SET(KIT_LIBS ${KIT_LIBS} "${OPENMPI_LIBRARY}")   
-+  ENDIF (OPENMPI_LIBRARY)   
-+  IF (OPENMPI_EXTRA_LIBRARY)   
-+    SET(KIT_LIBS ${KIT_LIBS} "${OPENMPI_EXTRA_LIBRARY}")   
-+  ENDIF (OPENMPI_EXTRA_LIBRARY)
- ENDIF (VTK_USE_MPI)
- 
- SET(Kit_EXTRA_SRCS)
-diff -Naur VTK/Parallel/FindLAMMPI.cmake VTK.new/Parallel/FindLAMMPI.cmake
---- VTK/Parallel/FindLAMMPI.cmake	1969-12-31 19:00:00.000000000 -0500
-+++ VTK.new/Parallel/FindLAMMPI.cmake	2008-02-21 15:13:38.000000000 -0500
-@@ -0,0 +1,17 @@
-+# - Find LamMPI
-+FIND_LIBRARY(LAMMPI_LIBRARY 
-+             NAMES lam
-+             PATHS /usr/lib /usr/lib64 
-+             "$ENV{ProgramFiles}/MPICH/SDK/Lib"
-+             "$ENV{ProgramFiles}/MPICH2/Lib"
-+             "C:/Program Files/MPICH/SDK/Lib" 
-+)
-+
-+FIND_LIBRARY(LAMMPI_EXTRA_LIBRARY 
-+             NAMES lammpi++
-+             PATHS /usr/lib /usr/lib64 
-+             "$ENV{ProgramFiles}/MPICH/SDK/Lib"
-+             "C:/Program Files/MPICH/SDK/Lib" 
-+             DOC "If a second mpi library is necessary, specify it here.")
-+
-+MARK_AS_ADVANCED(LAMMPI_LIBRARY LAMMPI_EXTRA_LIBRARY)
-diff -Naur VTK/Parallel/FindOpenmpi.cmake VTK.new/Parallel/FindOpenmpi.cmake
---- VTK/Parallel/FindOpenmpi.cmake	1969-12-31 19:00:00.000000000 -0500
-+++ VTK.new/Parallel/FindOpenmpi.cmake	2008-02-21 15:14:23.000000000 -0500
-@@ -0,0 +1,18 @@
-+# - Find openmpi
-+FIND_PATH(MPI_INCLUDE_PATH mpi.h 
-+          /usr/include 
-+          /usr/include/openmpi
-+)
-+
-+FIND_LIBRARY(OPENMPI_LIBRARY 
-+             NAMES mpi
-+             PATHS /usr/lib /usr/lib64 
-+)
-+
-+FIND_LIBRARY(OPENMPI_EXTRA_LIBRARY 
-+             NAMES mpi_cxx
-+             PATHS /usr/lib /usr/lib64 
-+             DOC "If a second mpi library is necessary, specify it here.")
-+
-+MARK_AS_ADVANCED(OPENMPI_LIBRARY OPENMPI_EXTRA_LIBRARY)
-+
diff --git a/sci-libs/vtk/files/vtk-5.0.4-gcc4.3.patch b/sci-libs/vtk/files/vtk-5.0.4-gcc4.3.patch
deleted file mode 100644
index f921ee319..000000000
--- a/sci-libs/vtk/files/vtk-5.0.4-gcc4.3.patch
+++ /dev/null
@@ -1,33 +0,0 @@
-diff -Naur VTK/Utilities/DICOMParser/DICOMAppHelper.cxx VTK.new/Utilities/DICOMParser/DICOMAppHelper.cxx
---- VTK/Utilities/DICOMParser/DICOMAppHelper.cxx	2007-05-03 13:12:13.000000000 -0400
-+++ VTK.new/Utilities/DICOMParser/DICOMAppHelper.cxx	2008-05-24 13:44:18.000000000 -0400
-@@ -34,6 +34,7 @@
- #include <string>
- #include <math.h>
- #include <algorithm>
-+#include <cstring>
- #if defined(__BORLANDC__)
- #include <mem.h> // for memcpy
- #endif
-diff -Naur VTK/Utilities/DICOMParser/DICOMFile.cxx VTK.new/Utilities/DICOMParser/DICOMFile.cxx
---- VTK/Utilities/DICOMParser/DICOMFile.cxx	2005-07-26 16:02:22.000000000 -0400
-+++ VTK.new/Utilities/DICOMParser/DICOMFile.cxx	2008-05-24 13:44:18.000000000 -0400
-@@ -24,6 +24,7 @@
- 
- #include <stdio.h>
- #include <string>
-+#include <cstring>
- 
- #include "DICOMConfig.h"
- #include "DICOMFile.h"
-diff -Naur VTK/Utilities/DICOMParser/DICOMParser.cxx VTK.new/Utilities/DICOMParser/DICOMParser.cxx
---- VTK/Utilities/DICOMParser/DICOMParser.cxx	2006-03-24 10:59:50.000000000 -0500
-+++ VTK.new/Utilities/DICOMParser/DICOMParser.cxx	2008-05-24 13:44:19.000000000 -0400
-@@ -37,6 +37,7 @@
- #endif
- 
- #include <string>
-+#include <cstring>
- 
- #include "DICOMConfig.h"
- #include "DICOMParser.h"
diff --git a/sci-libs/vtk/files/vtk-5.2.0-tcl-install.patch b/sci-libs/vtk/files/vtk-5.2.0-tcl-install.patch
deleted file mode 100644
index c7da78678..000000000
--- a/sci-libs/vtk/files/vtk-5.2.0-tcl-install.patch
+++ /dev/null
@@ -1,12 +0,0 @@
-diff -Naur VTK/CMakeLists.txt VTK.new/CMakeLists.txt
---- VTK/CMakeLists.txt	2008-05-13 17:50:09.000000000 -0400
-+++ VTK.new/CMakeLists.txt	2008-10-05 10:34:42.000000000 -0400
-@@ -182,7 +182,7 @@
- # Compute the proper location for installing the Tcl package.  This
- # must be a fixed relative path below the library install location and
- # is therefore not settable by parent projects.
--SET(VTK_INSTALL_TCL_DIR ${VTK_INSTALL_LIB_DIR})
-+SET(VTK_INSTALL_TCL_DIR ${VTK_INSTALL_PACKAGE_DIR})
- 
- IF(NOT VTK_INSTALL_JAVA_DIR)
-   SET(VTK_INSTALL_JAVA_DIR ${VTK_INSTALL_PACKAGE_DIR}/java)
diff --git a/sci-libs/vtk/files/vtk-5.4.2-boost-property_map.patch b/sci-libs/vtk/files/vtk-5.4.2-boost-property_map.patch
deleted file mode 100644
index 90c6d6a1f..000000000
--- a/sci-libs/vtk/files/vtk-5.4.2-boost-property_map.patch
+++ /dev/null
@@ -1,194 +0,0 @@
-diff --git a/Infovis/Testing/Cxx/TestBoostAdapter.cxx b/Infovis/Testing/Cxx/TestBoostAdapter.cxx
-index 6af2855..484a9e0 100644
---- a/Infovis/Testing/Cxx/TestBoostAdapter.cxx
-+++ b/Infovis/Testing/Cxx/TestBoostAdapter.cxx
-@@ -36,8 +36,8 @@
- #include <boost/graph/strong_components.hpp>
- #include <boost/graph/dijkstra_shortest_paths.hpp>
- #include <boost/graph/transitive_closure.hpp>
--#include <boost/property_map.hpp>
--#include <boost/vector_property_map.hpp>
-+#include <boost/property_map/property_map.hpp>
-+#include <boost/property_map/vector_property_map.hpp>
- 
- #include "vtkGraph.h"
- #include "vtkBoostGraphAdapter.h"
-diff --git a/Infovis/vtkBoostBiconnectedComponents.cxx b/Infovis/vtkBoostBiconnectedComponents.cxx
-index 6799dd0..dd759d5 100644
---- a/Infovis/vtkBoostBiconnectedComponents.cxx
-+++ b/Infovis/vtkBoostBiconnectedComponents.cxx
-@@ -32,7 +32,7 @@
- #include "vtkGraph.h"
- #include "vtkBoostGraphAdapter.h"
- #include <boost/graph/biconnected_components.hpp>
--#include <boost/vector_property_map.hpp>
-+#include <boost/property_map/vector_property_map.hpp>
- #include <boost/version.hpp>
- #include <vtksys/stl/vector>
- #include <vtksys/stl/utility>
-diff --git a/Infovis/vtkBoostBrandesCentrality.cxx b/Infovis/vtkBoostBrandesCentrality.cxx
-index e214a72..443c039 100644
---- a/Infovis/vtkBoostBrandesCentrality.cxx
-+++ b/Infovis/vtkBoostBrandesCentrality.cxx
-@@ -36,7 +36,7 @@
- 
- #include <boost/graph/adjacency_list.hpp>
- #include <boost/graph/betweenness_centrality.hpp>
--#include <boost/vector_property_map.hpp>
-+#include <boost/property_map/vector_property_map.hpp>
- 
- using namespace boost;
- 
-diff --git a/Infovis/vtkBoostBreadthFirstSearch.cxx b/Infovis/vtkBoostBreadthFirstSearch.cxx
-index 7fab585..6e56a7c 100644
---- a/Infovis/vtkBoostBreadthFirstSearch.cxx
-+++ b/Infovis/vtkBoostBreadthFirstSearch.cxx
-@@ -46,8 +46,8 @@
- 
- #include <boost/graph/visitors.hpp>
- #include <boost/graph/breadth_first_search.hpp>
--#include <boost/property_map.hpp>
--#include <boost/vector_property_map.hpp>
-+#include <boost/property_map/property_map.hpp>
-+#include <boost/property_map/vector_property_map.hpp>
- #include <boost/pending/queue.hpp>
- 
- #include <vtksys/stl/utility> // for pair
-diff --git a/Infovis/vtkBoostBreadthFirstSearchTree.cxx b/Infovis/vtkBoostBreadthFirstSearchTree.cxx
-index 5c64516..64ee7b5 100644
---- a/Infovis/vtkBoostBreadthFirstSearchTree.cxx
-+++ b/Infovis/vtkBoostBreadthFirstSearchTree.cxx
-@@ -39,7 +39,7 @@
- #include "vtkTree.h"
- 
- #include <boost/graph/breadth_first_search.hpp>
--#include <boost/vector_property_map.hpp>
-+#include <boost/property_map/vector_property_map.hpp>
- #include <boost/pending/queue.hpp>
- 
- using namespace boost;
-diff --git a/Infovis/vtkBoostConnectedComponents.cxx b/Infovis/vtkBoostConnectedComponents.cxx
-index 69e9d8f..c88f4ab 100644
---- a/Infovis/vtkBoostConnectedComponents.cxx
-+++ b/Infovis/vtkBoostConnectedComponents.cxx
-@@ -33,7 +33,7 @@
- 
- #include "vtkBoostGraphAdapter.h"
- #include <boost/graph/strong_components.hpp>
--#include <boost/vector_property_map.hpp>
-+#include <boost/property_map/vector_property_map.hpp>
- 
- using namespace boost;
- 
-diff --git a/Infovis/vtkBoostKruskalMinimumSpanningTree.cxx b/Infovis/vtkBoostKruskalMinimumSpanningTree.cxx
-index b0c89de..7ea3aa9 100644
---- a/Infovis/vtkBoostKruskalMinimumSpanningTree.cxx
-+++ b/Infovis/vtkBoostKruskalMinimumSpanningTree.cxx
-@@ -40,7 +40,7 @@ PURPOSE.  See the above copyright notice for more information.
- #include "vtkTree.h"
- 
- #include <boost/graph/kruskal_min_spanning_tree.hpp>
--#include <boost/vector_property_map.hpp>
-+#include <boost/property_map/vector_property_map.hpp>
- #include <boost/pending/queue.hpp>
- 
- using namespace boost;
-diff --git a/Infovis/vtkBoostPrimMinimumSpanningTree.cxx b/Infovis/vtkBoostPrimMinimumSpanningTree.cxx
-index 935d0f7..48716fd 100644
---- a/Infovis/vtkBoostPrimMinimumSpanningTree.cxx
-+++ b/Infovis/vtkBoostPrimMinimumSpanningTree.cxx
-@@ -39,7 +39,7 @@ PURPOSE.  See the above copyright notice for more information.
- #include "vtkTree.h"
- 
- #include <boost/graph/prim_minimum_spanning_tree.hpp>
--#include <boost/vector_property_map.hpp>
-+#include <boost/property_map/vector_property_map.hpp>
- #include <boost/pending/queue.hpp>
- 
- using namespace boost;
-diff --git a/Infovis/vtkTreeLayoutStrategy.cxx b/Infovis/vtkTreeLayoutStrategy.cxx
-index 6efa586..222afe9 100644
---- a/Infovis/vtkTreeLayoutStrategy.cxx
-+++ b/Infovis/vtkTreeLayoutStrategy.cxx
-@@ -375,8 +375,8 @@ void vtkTreeLayoutStrategy::PrintSelf(ostream& os, vtkIndent indent)
- #include "vtkTreeToBoostAdapter.h"
- #include <boost/graph/visitors.hpp>
- #include <boost/graph/depth_first_search.hpp>
--#include <boost/property_map.hpp>
--#include <boost/vector_property_map.hpp>
-+#include <boost/property_map/property_map.hpp>
-+#include <boost/property_map/vector_property_map.hpp>
- #include <boost/pending/queue.hpp>
- 
- using namespace boost;
-diff --git a/Parallel/vtkPBGLBreadthFirstSearch.cxx b/Parallel/vtkPBGLBreadthFirstSearch.cxx
-index 2b4681b..eebeaa9 100644
---- a/Parallel/vtkPBGLBreadthFirstSearch.cxx
-+++ b/Parallel/vtkPBGLBreadthFirstSearch.cxx
-@@ -50,8 +50,8 @@
- #include <boost/graph/distributed/breadth_first_search.hpp>
- #include <boost/parallel/algorithm.hpp>
- #include <boost/graph/visitors.hpp>
--#include <boost/property_map.hpp>
--#include <boost/vector_property_map.hpp>
-+#include <boost/property_map/property_map.hpp>
-+#include <boost/property_map/vector_property_map.hpp>
- #include <boost/pending/queue.hpp>
- 
- #include <vtksys/stl/utility> // for pair
-diff --git a/Parallel/vtkPBGLGraphAdapter.h b/Parallel/vtkPBGLGraphAdapter.h
-index 7b467b0..bacfd3a 100644
---- a/Parallel/vtkPBGLGraphAdapter.h
-+++ b/Parallel/vtkPBGLGraphAdapter.h
-@@ -31,7 +31,7 @@
- #include <boost/graph/distributed/mpi_process_group.hpp>
- #include <boost/graph/properties.hpp>
- #include <boost/graph/parallel/container_traits.hpp>
--#include <boost/parallel/local_property_map.hpp>
-+#include <boost/property_map/parallel/local_property_map.hpp>
- #include <boost/serialization/base_object.hpp>
- #include <boost/functional/hash.hpp>
- //ETX
-diff --git a/Parallel/vtkPBGLMinimumSpanningTree.cxx b/Parallel/vtkPBGLMinimumSpanningTree.cxx
-index da4647e..f9c3229 100644
---- a/Parallel/vtkPBGLMinimumSpanningTree.cxx
-+++ b/Parallel/vtkPBGLMinimumSpanningTree.cxx
-@@ -48,8 +48,8 @@
- #include <boost/graph/distributed/dehne_gotz_min_spanning_tree.hpp>
- #include <boost/graph/distributed/vertex_list_adaptor.hpp>
- #include <boost/parallel/global_index_map.hpp>
--#include <boost/property_map.hpp>
--#include <boost/vector_property_map.hpp>
-+#include <boost/property_map/property_map.hpp>
-+#include <boost/property_map/vector_property_map.hpp>
- #include <boost/pending/queue.hpp>
- 
- #include <vtksys/stl/utility> // for pair
-diff --git a/Parallel/vtkPBGLShortestPaths.cxx b/Parallel/vtkPBGLShortestPaths.cxx
-index 074143f..8517304 100644
---- a/Parallel/vtkPBGLShortestPaths.cxx
-+++ b/Parallel/vtkPBGLShortestPaths.cxx
-@@ -49,8 +49,8 @@
- 
- #include <boost/graph/distributed/delta_stepping_shortest_paths.hpp>
- #include <boost/parallel/algorithm.hpp>
--#include <boost/property_map.hpp>
--#include <boost/vector_property_map.hpp>
-+#include <boost/property_map/property_map.hpp>
-+#include <boost/property_map/vector_property_map.hpp>
- 
- #include <vtksys/stl/utility> // for pair
- 
-diff --git a/Parallel/vtkPBGLVertexColoring.cxx b/Parallel/vtkPBGLVertexColoring.cxx
-index 9aa87a0..301a245 100644
---- a/Parallel/vtkPBGLVertexColoring.cxx
-+++ b/Parallel/vtkPBGLVertexColoring.cxx
-@@ -47,7 +47,7 @@
- 
- #include <boost/graph/distributed/boman_et_al_graph_coloring.hpp>
- #include <boost/parallel/algorithm.hpp>
--#include <boost/property_map.hpp>
-+#include <boost/property_map/property_map.hpp>
- 
- #include <vtksys/stl/utility> // for pair
- 
diff --git a/sci-libs/vtk/files/vtk-5.4.2-cg-path.patch b/sci-libs/vtk/files/vtk-5.4.2-cg-path.patch
deleted file mode 100644
index 53d43ee80..000000000
--- a/sci-libs/vtk/files/vtk-5.4.2-cg-path.patch
+++ /dev/null
@@ -1,35 +0,0 @@
-diff -Naur VTK/CMake/FindCg.cmake VTK.new/CMake/FindCg.cmake
---- VTK/CMake/FindCg.cmake	2005-10-04 11:25:51.000000000 -0400
-+++ VTK.new/CMake/FindCg.cmake	2009-07-17 14:10:30.000000000 -0400
-@@ -82,6 +82,7 @@
-     FIND_PROGRAM( CG_COMPILER cgc
-       /usr/bin
-       /usr/local/bin
-+      /opt/nvidia-cg-toolkit/bin
-       DOC "The Cg Compiler"
-       )
-     GET_FILENAME_COMPONENT(CG_COMPILER_DIR "${CG_COMPILER}" PATH)
-@@ -89,6 +90,7 @@
-     FIND_PATH( CG_INCLUDE_PATH Cg/cg.h
-       /usr/include
-       /usr/local/include
-+      /opt/nvidia-cg-toolkit/include
-       ${CG_COMPILER_SUPER_DIR}/include
-       DOC "The directory where Cg/cg.h resides"
-       )
-@@ -98,6 +100,7 @@
-       /usr/lib
-       /usr/local/lib64
-       /usr/local/lib
-+      /opt/nvidia-cg-toolkit/lib
-       ${CG_COMPILER_SUPER_DIR}/lib64
-       ${CG_COMPILER_SUPER_DIR}/lib
-       DOC "The Cg runtime library"
-@@ -108,6 +111,7 @@
-       /usr/lib
-       /usr/local/lib64
-       /usr/local/lib
-+      /opt/nvidia-cg-toolkit/lib
-       ${CG_COMPILER_SUPER_DIR}/lib64
-       ${CG_COMPILER_SUPER_DIR}/lib
-       DOC "The Cg runtime library"
diff --git a/sci-libs/vtk/files/vtk-5.4.2-libpng14.patch b/sci-libs/vtk/files/vtk-5.4.2-libpng14.patch
deleted file mode 100644
index 1f12ae926..000000000
--- a/sci-libs/vtk/files/vtk-5.4.2-libpng14.patch
+++ /dev/null
@@ -1,20 +0,0 @@
---- IO/vtkPNGReader.cxx
-+++ IO/vtkPNGReader.cxx
-@@ -116,7 +116,7 @@
-   // minimum of a byte per pixel
-   if (color_type == PNG_COLOR_TYPE_GRAY && bit_depth < 8) 
-     {
--    png_set_gray_1_2_4_to_8(png_ptr);
-+    png_set_expand_gray_1_2_4_to_8(png_ptr);
-     }
- 
-   // add alpha if any alpha found
-@@ -225,7 +225,7 @@
-   // minimum of a byte per pixel
-   if (color_type == PNG_COLOR_TYPE_GRAY && bit_depth < 8) 
-     {
--    png_set_gray_1_2_4_to_8(png_ptr);
-+    png_set_expand_gray_1_2_4_to_8(png_ptr);
-     }
- 
-   // add alpha if any alpha found
diff --git a/sci-libs/vtk/files/vtk-5.6.0-R.patch b/sci-libs/vtk/files/vtk-5.6.0-R.patch
deleted file mode 100644
index 1327121c2..000000000
--- a/sci-libs/vtk/files/vtk-5.6.0-R.patch
+++ /dev/null
@@ -1,57 +0,0 @@
-diff --git a/CMake/FindR.cmake b/CMake/FindR.cmake
-index ee49570..c830db0 100644
---- a/CMake/FindR.cmake
-+++ b/CMake/FindR.cmake
-@@ -18,13 +18,12 @@ IF (R_COMMAND)
- ENDIF (R_COMMAND)
- SET(CMAKE_FIND_APPBUNDLE ${TEMP_CMAKE_FIND_APPBUNDLE})
- 
--FIND_PATH(R_INCLUDE_DIR R.h PATHS /usr/local/lib /usr/local/lib64 PATH_SUFFIXES R/include DOC "Path to file R.h")
-+FIND_PATH(R_INCLUDE_DIR R.h PATHS /usr/lib /usr/lib64 PATH_SUFFIXES R/include DOC "Path to file R.h")
- FIND_LIBRARY(R_LIBRARY_BASE R PATHS ${R_BASE_DIR} PATH_SUFFIXES /lib DOC "R library (example libR.a, libR.dylib, etc.).")
--FIND_LIBRARY(R_LIBRARY_BLAS Rblas PATHS ${R_BASE_DIR} PATH_SUFFIXES /lib DOC "Rblas library (example libRblas.a, libRblas.dylib, etc.).")
--FIND_LIBRARY(R_LIBRARY_LAPACK Rlapack PATHS ${R_BASE_DIR} PATH_SUFFIXES /lib  DOC "Rlapack library (example libRlapack.a, libRlapack.dylib, etc.).")
-+FIND_LIBRARY(R_LIBRARY_MATH Rmath PATHS ${R_BASE_DIR} PATH_SUFFIXES /lib DOC "Rmath library (example libRmath.a, libRmath.dylib, etc.).")
- FIND_LIBRARY(R_LIBRARY_READLINE readline DOC "(Optional) system readline library. Only required if the R libraries were build with readline support.")
- 
--SET(R_LIBRARIES ${R_LIBRARY_BASE} ${R_LIBRARY_BLAS} ${R_LIBRARY_LAPACK} ${R_LIBRARY_BASE})
-+SET(R_LIBRARIES ${R_LIBRARY_BASE} ${R_LIBRARY_MATH} ${R_LIBRARY_BASE})
- IF (R_LIBRARY_READLINE)
-   SET(R_LIBRARIES ${R_LIBRARIES} ${R_LIBRARY_READLINE})
- ENDIF (R_LIBRARY_READLINE)
-diff --git a/CMakeLists.txt b/CMakeLists.txt
-index 9d4e881..1a828a4 100644
---- a/CMakeLists.txt
-+++ b/CMakeLists.txt
-@@ -1054,8 +1054,18 @@ IF(VTK_WRAP_JAVA)
-   ENDIF(JAVA_AWT_LIBRARY)
- ENDIF(VTK_WRAP_JAVA)
- 
-+IF(VTK_USE_GNU_R)
-+  FIND_PACKAGE(R)
-+ENDIF(VTK_USE_GNU_R)
- 
--
-+IF(VTK_USE_BOOST)
-+  if (VTK_USE_PARALLEL_BGL)
-+    FIND_PACKAGE(Boost 1.39.0 REQUIRED
-+      COMPONENTS mpi serialization filesystem system graph_parallel)
-+  else (VTK_USE_PARALLEL_BGL)
-+    FIND_PACKAGE(Boost REQUIRED)
-+  endif (VTK_USE_PARALLEL_BGL)
-+ENDIF(VTK_USE_BOOST)
- #-----------------------------------------------------------------------------
- # The entire VTK tree should use the same include path.
- 
-diff --git a/Graphics/vtkRInterface.cxx b/Graphics/vtkRInterface.cxx
-index 324e845..56a4869 100644
---- a/Graphics/vtkRInterface.cxx
-+++ b/Graphics/vtkRInterface.cxx
-@@ -23,6 +23,7 @@
- #undef HAVE_UINTPTR_T
- #ifdef HAVE_VTK_UINTPTR_T
- #define HAVE_UINTPTR_T HAVE_VTK_UINTPTR_T
-+#include <stdint.h>
- #endif
- 
- #include "vtkInformation.h"
diff --git a/sci-libs/vtk/files/vtk-5.6.0-boost-property_map.patch b/sci-libs/vtk/files/vtk-5.6.0-boost-property_map.patch
deleted file mode 100644
index 9319378ac..000000000
--- a/sci-libs/vtk/files/vtk-5.6.0-boost-property_map.patch
+++ /dev/null
@@ -1,13 +0,0 @@
-diff --git a/Infovis/vtkTreeLayoutStrategy.cxx b/Infovis/vtkTreeLayoutStrategy.cxx
-index 4a764ea..74d0b53 100644
---- a/Infovis/vtkTreeLayoutStrategy.cxx
-+++ b/Infovis/vtkTreeLayoutStrategy.cxx
-@@ -388,7 +388,7 @@ void vtkTreeLayoutStrategy::PrintSelf(ostream& os, vtkIndent indent)
- #include "vtkTreeToBoostAdapter.h"
- #include <boost/graph/visitors.hpp>
- #include <boost/graph/depth_first_search.hpp>
--#include <boost/property_map.hpp>
-+#include <boost/property_map/property_map.hpp>
- #include <boost/pending/queue.hpp>
- 
- using namespace boost;
diff --git a/sci-libs/vtk/files/vtk-5.6.0-cg-path.patch b/sci-libs/vtk/files/vtk-5.6.0-cg-path.patch
deleted file mode 100644
index 984bf5008..000000000
--- a/sci-libs/vtk/files/vtk-5.6.0-cg-path.patch
+++ /dev/null
@@ -1,36 +0,0 @@
-diff --git a/CMake/FindCg.cmake b/CMake/FindCg.cmake
-index ceb41de..5eb6003 100644
---- a/CMake/FindCg.cmake
-+++ b/CMake/FindCg.cmake
-@@ -82,6 +82,7 @@ ELSE (APPLE)
-     FIND_PROGRAM( CG_COMPILER cgc
-       /usr/bin
-       /usr/local/bin
-+      /opt/nvidia-cg-toolkit/bin
-       DOC "The Cg Compiler"
-       )
-     GET_FILENAME_COMPONENT(CG_COMPILER_DIR "${CG_COMPILER}" PATH)
-@@ -89,6 +90,7 @@ ELSE (APPLE)
-     FIND_PATH( CG_INCLUDE_PATH Cg/cg.h
-       /usr/include
-       /usr/local/include
-+      /opt/nvidia-cg-toolkit/include
-       ${CG_COMPILER_SUPER_DIR}/include
-       DOC "The directory where Cg/cg.h resides"
-       )
-@@ -98,6 +100,7 @@ ELSE (APPLE)
-       /usr/lib
-       /usr/local/lib64
-       /usr/local/lib
-+      /opt/nvidia-cg-toolkit/lib
-       ${CG_COMPILER_SUPER_DIR}/lib64
-       ${CG_COMPILER_SUPER_DIR}/lib
-       DOC "The Cg runtime library"
-@@ -108,6 +111,7 @@ ELSE (APPLE)
-       /usr/lib
-       /usr/local/lib64
-       /usr/local/lib
-+      /opt/nvidia-cg-toolkit/lib
-       ${CG_COMPILER_SUPER_DIR}/lib64
-       ${CG_COMPILER_SUPER_DIR}/lib
-       DOC "The Cg runtime library"
diff --git a/sci-libs/vtk/files/vtk-5.6.0-libpng14.patch b/sci-libs/vtk/files/vtk-5.6.0-libpng14.patch
deleted file mode 100644
index db1f87d3a..000000000
--- a/sci-libs/vtk/files/vtk-5.6.0-libpng14.patch
+++ /dev/null
@@ -1,22 +0,0 @@
-diff --git a/IO/vtkPNGReader.cxx b/IO/vtkPNGReader.cxx
-index d1f5c2f..0bf00e4 100644
---- a/IO/vtkPNGReader.cxx
-+++ b/IO/vtkPNGReader.cxx
-@@ -116,7 +116,7 @@ void vtkPNGReader::ExecuteInformation()
-   // minimum of a byte per pixel
-   if (color_type == PNG_COLOR_TYPE_GRAY && bit_depth < 8) 
-     {
--    png_set_gray_1_2_4_to_8(png_ptr);
-+    png_set_expand_gray_1_2_4_to_8(png_ptr);
-     }
- 
-   // add alpha if any alpha found
-@@ -225,7 +225,7 @@ void vtkPNGReaderUpdate2(vtkPNGReader *self, OT *outPtr,
-   // minimum of a byte per pixel
-   if (color_type == PNG_COLOR_TYPE_GRAY && bit_depth < 8) 
-     {
--    png_set_gray_1_2_4_to_8(png_ptr);
-+    png_set_expand_gray_1_2_4_to_8(png_ptr);
-     }
- 
-   // add alpha if any alpha found
diff --git a/sci-libs/vtk/files/vtk-5.6.0-odbc.patch b/sci-libs/vtk/files/vtk-5.6.0-odbc.patch
deleted file mode 100644
index be24af11a..000000000
--- a/sci-libs/vtk/files/vtk-5.6.0-odbc.patch
+++ /dev/null
@@ -1,12 +0,0 @@
-diff -Naur CMake/FindODBC.cmake.orig CMake/FindODBC.cmake
---- CMake/FindODBC.cmake.orig	2008-10-08 13:51:36.000000000 -0400
-+++ CMake/FindODBC.cmake	2010-01-21 22:11:26.000000000 -0500
-@@ -30,7 +30,7 @@
- )
- 
- FIND_LIBRARY( ODBC_LIBRARY 
--  NAMES iodbc unixodbc
-+  NAMES iodbc unixodbc odbc
-   PATHS
-   /usr/lib
-   /usr/lib/odbc
diff --git a/sci-libs/vtk/metadata.xml b/sci-libs/vtk/metadata.xml
deleted file mode 100644
index 4671a1cbe..000000000
--- a/sci-libs/vtk/metadata.xml
+++ /dev/null
@@ -1,20 +0,0 @@
-<?xml version="1.0" encoding="UTF-8"?>
-<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
-<pkgmetadata>
-<herd>sci</herd>
-<herd>java</herd>
-<maintainer>
-  <email>markusle@gentoo.org</email>
-  <name>Markus Dittrich</name>
-</maintainer>
-<maintainer>
-  <email>jlec@gentoo.org</email>
-  <name>Justin Lecher</name>
-</maintainer>
-<use>
-	<flag name='boost'>Add support for boost</flag>
-	<flag name='cg'>Use nvidia's cg shaders</flag>
-	<flag name='patented'>Build patented classes</flag>
-	<flag name='R'>Enable support for dev-lang/R</flag>
-</use>
-</pkgmetadata>
diff --git a/sci-libs/vtk/vtk-5.6.0-r3.ebuild b/sci-libs/vtk/vtk-5.6.0-r3.ebuild
deleted file mode 100644
index 450009cc9..000000000
--- a/sci-libs/vtk/vtk-5.6.0-r3.ebuild
+++ /dev/null
@@ -1,253 +0,0 @@
-# Copyright 1999-2010 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Header: $
-
-EAPI="3"
-PYTHON_DEPEND="python? 2"
-
-inherit eutils flag-o-matic java-pkg-opt-2 python qt4 versionator toolchain-funcs cmake-utils
-
-# Short package version
-SPV="$(get_version_component_range 1-2)"
-
-DESCRIPTION="The Visualization Toolkit"
-HOMEPAGE="http://www.vtk.org"
-SRC_URI="http://www.${PN}.org/files/release/${SPV}/${P}.tar.gz
-		examples? ( http://www.${PN}.org/files/release/${SPV}/${PN}data-${PV}.tar.gz )
-		doc? ( http://www.${PN}.org/doc/release/${SPV}/${PN}DocHtml-${PV}.tar.gz )"
-
-LICENSE="BSD LGPL-2"
-KEYWORDS="~amd64 ~x86"
-SLOT="0"
-IUSE="boost cg doc examples ffmpeg java mpi patented python qt4 tcl theora tk threads R mysql postgres odbc"
-RDEPEND="
-	mpi? ( virtual/mpi[cxx,romio] )
-	cg? ( media-gfx/nvidia-cg-toolkit )
-	tcl? ( >=dev-lang/tcl-8.2.3 )
-	tk? ( >=dev-lang/tk-8.2.3 )
-	java? ( >=virtual/jre-1.5 )
-	qt4? (
-			x11-libs/qt-core:4
-			x11-libs/qt-gui:4
-			x11-libs/qt-opengl:4
-			x11-libs/qt-sql:4
-			x11-libs/qt-webkit:4 )
-	examples? (
-			x11-libs/qt-core:4[qt3support]
-			x11-libs/qt-gui:4[qt3support] )
-	theora? ( media-libs/libtheora )
-	ffmpeg? ( media-video/ffmpeg )
-	R? ( dev-lang/R )
-	mysql? ( virtual/mysql )
-	postgres? ( dev-db/postgresql-base )
-	odbc? ( dev-db/unixODBC )
-	dev-libs/expat
-	dev-libs/libxml2
-	media-libs/freetype
-	media-libs/jpeg
-	media-libs/libpng
-	media-libs/mesa
-	media-libs/tiff
-	sys-libs/zlib
-	virtual/opengl
-	x11-libs/libX11
-	x11-libs/libXmu
-	x11-libs/libXt"
-
-DEPEND="${RDEPEND}
-		java? ( >=virtual/jdk-1.5 )
-		boost? ( >=dev-libs/boost-1.40.0[mpi?] )
-		mpi? ( >=dev-util/cmake-2.8.1-r2 )
-		>=dev-util/cmake-2.6"
-
-S="${WORKDIR}"/VTK
-
-pkg_setup() {
-	echo
-	einfo "Please note that the VTK build occasionally fails when"
-	einfo "using parallel make. Hence, if you experience a build"
-	einfo "failure please try re-emerging with MAKEOPTS=\"-j1\" first."
-	echo
-
-	java-pkg-opt-2_pkg_setup
-
-	use python && python_set_active_version 2
-	use qt4 && qt4_pkg_setup
-}
-
-src_prepare() {
-	epatch "${FILESDIR}"/${P}-cg-path.patch
-	epatch "${FILESDIR}"/${PN}-5.2.0-tcl-install.patch
-	epatch "${FILESDIR}"/${P}-boost-property_map.patch
-	epatch "${FILESDIR}"/${P}-libpng14.patch
-	epatch "${FILESDIR}"/${P}-R.patch
-	epatch "${FILESDIR}"/${P}-odbc.patch
-	sed -e "s:@VTK_TCL_LIBRARY_DIR@:/usr/$(get_libdir):" \
-		-i Wrapping/Tcl/pkgIndex.tcl.in \
-		|| die "Failed to fix tcl pkgIndex file"
-}
-
-src_configure() {
-	# general configuration
-	local mycmakeargs=(
-		-Wno-dev
-		-DVTK_INSTALL_PACKAGE_DIR=/$(get_libdir)/${PN}-${SPV}
-		-DCMAKE_SKIP_RPATH=YES
-		-DVTK_DIR="${S}"
-		-DVTK_INSTALL_LIB_DIR=/$(get_libdir)/
-		-DVTK_DATA_ROOT:PATH="${EPREFIX}"/usr/share/${PN}/data
-		-DCMAKE_INSTALL_PREFIX="${EPREFIX}"/usr
-		-DBUILD_SHARED_LIBS=ON
-		-DVTK_USE_SYSTEM_EXPAT=ON
-		-DVTK_USE_SYSTEM_FREETYPE=ON
-		-DVTK_USE_SYSTEM_JPEG=ON
-		-DVTK_USE_SYSTEM_LIBXML2=ON
-		-DVTK_USE_SYSTEM_PNG=ON
-		-DVTK_USE_SYSTEM_TIFF=ON
-		-DVTK_USE_SYSTEM_ZLIB=ON
-		-DBUILD_TESTING=OFF
-		-DBUILD_EXAMPLES=OFF
-		-DVTK_USE_HYBRID=ON
-		-DVTK_USE_GL2PS=ON
-		-DVTK_USE_RENDERING=ON)
-
-	# use flag triggered options
-	mycmakeargs+=(
-		$(cmake-utils_use boost VTK_USE_BOOST)
-		$(cmake-utils_use cg VTK_USE_CG_SHADERS)
-		$(cmake-utils_use doc DOCUMENTATION_HTML_HELP)
-		$(cmake-utils_use_build doc DOCUMENTATION)
-		$(cmake-utils_use java VTK_USE_JAVA)
-		$(cmake-utils_use mpi VTK_USE_MPI)
-		$(cmake-utils_use patented VTK_USE_PATENTED)
-		$(cmake-utils_use qt4 VTK_USE_QT)
-		$(cmake-utils_use tcl VTK_WRAP_TCL)
-		$(cmake-utils_use theora VTK_USE_OGGTHEORA_ENCODER)
-		$(cmake-utils_use ffmpeg VTK_USE_FFMPEG_ENCODER)
-		$(cmake-utils_use tk VTK_USE_TK)
-		$(cmake-utils_use threads VTK_USE_PARALLEL)
-		$(cmake-utils_use R VTK_USE_GNU_R)
-		$(cmake-utils_use mysql VTK_USE_MYSQL)
-		$(cmake-utils_use postgres VTK_USE_POSTGRES)
-		$(cmake-utils_use odbc VTK_USE_ODBC))
-
-	use theora &&
-	mycmakeargs+=(-DVTK_USE_SYSTEM_OGGTHEORA=ON)
-
-	# mpi needs the parallel framework
-	if use mpi && use !threads; then
-		mycmakeargs+=(-DVTK_USE_PARALLEL=ON)
-	fi
-
-	if use java; then
-		mycmakeargs+=(
-			-DVTK_WRAP_JAVA=ON
-			-DJAVA_AWT_INCLUDE_PATH=`java-config -O`/include
-			-DJAVA_INCLUDE_PATH:PATH=`java-config -O`/include
-			-DJAVA_INCLUDE_PATH2:PATH=`java-config -O`/include/linux)
-
-		if [ "${ARCH}" == "amd64" ]; then
-			mycmakeargs+=(-DJAVA_AWT_LIBRARY=`java-config -O`/jre/lib/${ARCH}/libjawt.so)
-		else
-			mycmakeargs+=(-DJAVA_AWT_LIBRARY:PATH=`java-config -O`/jre/lib/i386/libjawt.so)
-		fi
-	fi
-
-	if use python; then
-		mycmakeargs+=(
-			-DVTK_WRAP_PYTHON=ON
-			-DPYTHON_INCLUDE_PATH=$(python_get_includedir)
-			-DPYTHON_LIBRARY=$(python_get_library)
-			-DVTK_PYTHON_SETUP_ARGS:STRING=--root="${D}")
-	fi
-
-	if use qt4 ; then
-		mycmakeargs+=(
-			-DVTK_USE_GUISUPPORT=ON
-			-DVTK_USE_QVTK=ON
-			-DVTK_USE_QVTK_QTOPENGL=ON
-			-DQT_WRAP_CPP=ON
-			-DQT_WRAP_UI=ON
-			-DVTK_INSTALL_QT_DIR=/$(get_libdir)/qt4/plugins/${PN}
-			-DDESIRED_QT_VERSION=4
-			-DQT_MOC_EXECUTABLE="${EPREFIX}"/usr/bin/moc
-			-DQT_UIC_EXECUTABLE="${EPREFIX}"/usr/bin/uic
-			-DQT_INCLUDE_DIR="${EPREFIX}"/usr/include/qt4
-			-DQT_QMAKE_EXECUTABLE="${EPREFIX}"/usr/bin/qmake)
-	fi
-
-	cmake-utils_src_configure
-}
-
-src_install() {
-	cmake-utils_src_install
-
-	# install docs
-	dohtml "${S}"/README.html || die "Failed to install docs"
-
-	# install Tcl docs
-	docinto vtk_tcl
-	dodoc "${S}"/Wrapping/Tcl/README || \
-		die "Failed to install Tcl docs"
-
-	# install examples
-	if use examples; then
-		dodir /usr/share/${PN} || \
-			die "Failed to create data/examples directory"
-
-		cp -pPR "${S}"/Examples "${D}"/usr/share/${PN}/examples || \
-			die "Failed to copy example files"
-
-		# fix example's permissions
-		find "${D}"/usr/share/${PN}/examples -type d -exec \
-			chmod 0755 {} \; || \
-			die "Failed to fix example directories permissions"
-		find "${D}"/usr/share/${PN}/examples -type f -exec \
-			chmod 0644 {} \; || \
-			die "Failed to fix example files permissions"
-
-		cp -pPR "${WORKDIR}"/VTKData "${D}"/usr/share/${PN}/data || \
-			die "Failed to copy data files"
-
-		# fix data's permissions
-		find "${D}"/usr/share/${PN}/data -type d -exec \
-			chmod 0755 {} \; || \
-			die "Failed to fix data directories permissions"
-		find "${D}"/usr/share/${PN}/data -type f -exec \
-			chmod 0644 {} \; || \
-			die "Failed to fix data files permissions"
-	fi
-
-	#install big docs
-	if use doc; then
-		cd "${WORKDIR}"/html
-		rm -f *.md5 || die "Failed to remove superfluous hashes"
-		einfo "Installing API docs. This may take some time."
-		insinto "/usr/share/doc/${PF}/api-docs"
-		doins -r ./* || die "Failed to install docs"
-	fi
-
-	# environment
-	echo "VTK_DATA_ROOT=/usr/share/${PN}/data" >> "${T}"/40${PN}
-	echo "VTK_DIR=/usr/$(get_libdir)/${PN}-${SPV}" >> "${T}"/40${PN}
-	echo "VTKHOME=/usr" >> "${T}"/40${PN}
-	doenvd "${T}"/40${PN}
-}
-
-pkg_postinst() {
-	if use patented; then
-		ewarn "Using patented code in VTK may require a license."
-		ewarn "For more information, please read:"
-		ewarn "http://public.kitware.com/cgi-bin/vtkfaq?req=show&file=faq07.005.htp"
-	fi
-
-	if use python; then
-		python_mod_optimize vtk
-	fi
-}
-
-pkg_postrm() {
-	if use python; then
-		python_mod_cleanup vtk
-	fi
-}