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authorHarald Weiner <harald.weiner@jku.at>2016-04-11 17:00:48 +0200
committerHarald Weiner <harald.weiner@jku.at>2016-04-11 17:00:48 +0200
commit7c61440f2102de169173fa847bc32d0969340430 (patch)
treed23cf836a29a2eac8404b68e14a28e389f98b5ed /sci-libs
parentsci-biology/pysam: Remove old, latest 0.9.0 in main tree (diff)
downloadsci-7c61440f2102de169173fa847bc32d0969340430.tar.gz
sci-7c61440f2102de169173fa847bc32d0969340430.tar.bz2
sci-7c61440f2102de169173fa847bc32d0969340430.zip
sci-libs/vtk: new revision with qt5 useflag, updated ebuild to EAPI 6
Diffstat (limited to 'sci-libs')
-rw-r--r--sci-libs/vtk/Manifest4
-rw-r--r--sci-libs/vtk/files/vtk-6.1.0-freetype.patch22
-rw-r--r--sci-libs/vtk/files/vtk-6.1.0-gdal2.patch33
-rw-r--r--sci-libs/vtk/files/vtk-6.1.0-glext.patch13
-rw-r--r--sci-libs/vtk/files/vtk-6.1.0-install.patch19
-rw-r--r--sci-libs/vtk/files/vtk-6.1.0-memset.patch147
-rw-r--r--sci-libs/vtk/files/vtk-6.1.0-netcdf.patch29
-rw-r--r--sci-libs/vtk/files/vtk-6.1.0-system.patch27
-rw-r--r--sci-libs/vtk/files/vtk-6.1.0-web.patch25
-rw-r--r--sci-libs/vtk/metadata.xml35
-rw-r--r--sci-libs/vtk/vtk-6.1.0-r3.ebuild420
11 files changed, 774 insertions, 0 deletions
diff --git a/sci-libs/vtk/Manifest b/sci-libs/vtk/Manifest
new file mode 100644
index 000000000..18fdb61db
--- /dev/null
+++ b/sci-libs/vtk/Manifest
@@ -0,0 +1,4 @@
+DIST VTK-6.1.0.tar.gz 27608882 SHA256 bd7df10a479606d529a8b71f466c44a2bdd11fd534c62ce0aa44fad91883fa34 SHA512 3ab922166502348e5cdd68e14dbf4717c0405c9d8881c04aa8be8f95d8516af39cd02aaca5171c6de8af1b462ca386399b7a87a843ec62999f0f32c11788a2dc WHIRLPOOL e387390efdc8cd2e413524794786369ba8a2bfe788913dfb161b82d9bc041e15ed5585286bebe38f955d1def3043481303d3bc74c648bbf5bf856e212ac9950c
+DIST VTKData-6.1.0.tar.gz 94452190 SHA256 aba27ac05d721e36b9424131f1d0f673448f2b31aac34e9e74590fdf208ad0c7 SHA512 4e23cc3de3b81a852458849f2bd4dfe2e84e9df4f77f5f0d4ac249b04a7f74144a483a91876bd748bb90685d1943071e9b36fce8dd618376621bc37e63365e65 WHIRLPOOL 1ee803055e3bbf0c8150807a77efce81406c8a512c40644c5ccc35279cb1098bb8f0382b5f2bb01f483c8a38a4e81ee70ed39145c52b4375a0545919faee2a28
+DIST VTKLargeData-6.1.0.tar.gz 166019220 SHA256 d8985508ff2b7fbfbae0aadedfbe2b293640cf6441d3cce41da5c3f591c96d4c SHA512 3663a124c16448882ad3aef0fb15f55f438863ba2176106803ad9c6fb561325accd74f2675d8b6e1de791babfa8b992e516d87640efedda4a6daeb5affc2cf3f WHIRLPOOL db62af365a5c1d71b209d21578184ff1ee7a5913aefd7e5729b7dc555bdd20a8f070ed83051387634bf6a9fc1141ab68a291ec0d557602fa5802e3e6020b7ae1
+DIST vtkDocHtml-6.1.0.tar.gz 230827905 SHA256 e35d0f5b7905e5c827d8daa71ee61b14dc080445efad91f97583a2b9303c1813 SHA512 fcae74a65157d87b39a162facdecbb0ab0a9b95b9f2555ed2b15d635b82034bfc62181eea441caf0b1edbe036b792a8231d409908b943398ce7f662c149d3a60 WHIRLPOOL bc1714223259953a605612c0da124ece60604989458b7de5cf24b37d0f4c339f50c07a13d899f218364e61a35f8e1ace126eda5e83acbc3fe4930b041df0f55d
diff --git a/sci-libs/vtk/files/vtk-6.1.0-freetype.patch b/sci-libs/vtk/files/vtk-6.1.0-freetype.patch
new file mode 100644
index 000000000..73af13e65
--- /dev/null
+++ b/sci-libs/vtk/files/vtk-6.1.0-freetype.patch
@@ -0,0 +1,22 @@
+--- a/Rendering/FreeType/vtkFreeTypeTools.cxx_orig 2014-12-23 09:25:35.000000000 +0100
++++ b/Rendering/FreeType/vtkFreeTypeTools.cxx 2014-12-24 09:40:31.886953389 +0100
+@@ -1185,7 +1185,7 @@
+ if (bitmap)
+ {
+ metaData.ascent = std::max(bitmapGlyph->top - 1, metaData.ascent);
+- metaData.descent = std::min(-(bitmap->rows - (bitmapGlyph->top - 1)),
++ metaData.descent = std::min(-(static_cast<int>(bitmap->rows) - (bitmapGlyph->top - 1)),
+ metaData.descent);
+ }
+ ++heightString;
+@@ -1952,8 +1952,8 @@
+ if (bitmap)
+ {
+ bbox[0] = std::min(bbox[0], pen[0] + bitmapGlyph->left);
+- bbox[1] = std::max(bbox[1], pen[0] + bitmapGlyph->left + bitmap->width);
+- bbox[2] = std::min(bbox[2], pen[1] + bitmapGlyph->top - 1 - bitmap->rows);
++ bbox[1] = std::max(bbox[1], pen[0] + bitmapGlyph->left + static_cast<int>(bitmap->width));
++ bbox[2] = std::min(bbox[2], pen[1] + bitmapGlyph->top - 1 - static_cast<int>(bitmap->rows));
+ bbox[3] = std::max(bbox[3], pen[1] + bitmapGlyph->top - 1);
+ }
+ else
diff --git a/sci-libs/vtk/files/vtk-6.1.0-gdal2.patch b/sci-libs/vtk/files/vtk-6.1.0-gdal2.patch
new file mode 100644
index 000000000..c21864102
--- /dev/null
+++ b/sci-libs/vtk/files/vtk-6.1.0-gdal2.patch
@@ -0,0 +1,33 @@
+diff --git a/IO/GDAL/vtkGDALVectorReader.cxx b/IO/GDAL/vtkGDALVectorReader.cxx
+index 86854a0..a0e234a 100644
+--- a/IO/GDAL/vtkGDALVectorReader.cxx
++++ b/IO/GDAL/vtkGDALVectorReader.cxx
+# Patch to build against newer GDAL per upstream commit
+# https://projects.archlinux.org/svntogit/community.git/tree/trunk/gdal2.patch?h=packages/vtk&id=43307598a98872fd4ce7739e47f5bb4cfcb5372d
+@@ -44,7 +44,7 @@ class vtkGDALVectorReader::Internal
+ public:
+ Internal( const char* srcName, int srcMode, int appendFeatures, int addFeatIds )
+ {
+- this->Source = OGRSFDriverRegistrar::Open( srcName, srcMode, &this->Driver );
++ this->Source = (GDALDataset*) OGROpen( srcName, srcMode, NULL );
+ if ( ! this->Source )
+ {
+ this->LastError = CPLGetLastErrorMsg();
+@@ -61,7 +61,7 @@ public:
+ {
+ if ( this->Source )
+ {
+- OGRDataSource::DestroyDataSource( this->Source );
++ GDALClose( (GDALDatasetH) this->Source );
+ }
+ }
+
+@@ -304,7 +304,7 @@ public:
+ return nCells;
+ }
+
+- OGRDataSource* Source;
++ GDALDataset* Source;
+ OGRSFDriver* Driver;
+ const char* LastError;
+ int LayerIdx;
diff --git a/sci-libs/vtk/files/vtk-6.1.0-glext.patch b/sci-libs/vtk/files/vtk-6.1.0-glext.patch
new file mode 100644
index 000000000..638de1730
--- /dev/null
+++ b/sci-libs/vtk/files/vtk-6.1.0-glext.patch
@@ -0,0 +1,13 @@
+diff -up VTK-6.1.0/Rendering/OpenGL/vtkOpenGL.h.glext VTK-6.1.0/Rendering/OpenGL/vtkOpenGL.h
+--- a/Rendering/OpenGL/vtkOpenGL.h.glext 2014-01-22 08:55:41.000000000 -0700
++++ b/Rendering/OpenGL/vtkOpenGL.h 2014-11-19 10:27:12.349345199 -0700
+@@ -19,7 +19,8 @@
+ #include "vtkConfigure.h"
+
+ // To prevent gl.h to include glext.h provided by the system
+-#define GL_GLEXT_LEGACY
++// https://bugzilla.redhat.com/show_bug.cgi?id=1138466
++// #define GL_GLEXT_LEGACY
+ #if defined(__APPLE__) && (defined(VTK_USE_CARBON) || defined(VTK_USE_COCOA))
+ # include <OpenGL/gl.h> // Include OpenGL API.
+ #else
diff --git a/sci-libs/vtk/files/vtk-6.1.0-install.patch b/sci-libs/vtk/files/vtk-6.1.0-install.patch
new file mode 100644
index 000000000..d45bf02dd
--- /dev/null
+++ b/sci-libs/vtk/files/vtk-6.1.0-install.patch
@@ -0,0 +1,19 @@
+diff -up VTK-6.1.0/CMake/vtkModuleTop.cmake.install VTK-6.1.0/CMake/vtkModuleTop.cmake
+--- a/CMake/vtkModuleTop.cmake.install 2014-01-23 19:12:04.922871103 -0700
++++ b/CMake/vtkModuleTop.cmake 2014-01-23 19:14:33.002645155 -0700
+@@ -330,11 +330,15 @@ if (NOT VTK_INSTALL_NO_DEVELOPMENT)
+ CMake/pythonmodules.h.in
+ CMake/UseVTK.cmake
+ CMake/FindTCL.cmake
++ CMake/TopologicalSort.cmake
+ CMake/vtkTclTkMacros.cmake
+ CMake/vtk-forward.c.in
++ CMake/vtkGroups.cmake
+ CMake/vtkForwardingExecutable.cmake
+ CMake/vtkJavaWrapping.cmake
+ CMake/vtkMakeInstantiator.cmake
++ CMake/vtkMakeInstantiator.cxx.in
++ CMake/vtkMakeInstantiator.h.in
+ CMake/vtkModuleAPI.cmake
+ CMake/vtkModuleHeaders.cmake.in
+ CMake/vtkModuleInfo.cmake.in
diff --git a/sci-libs/vtk/files/vtk-6.1.0-memset.patch b/sci-libs/vtk/files/vtk-6.1.0-memset.patch
new file mode 100644
index 000000000..362022edf
--- /dev/null
+++ b/sci-libs/vtk/files/vtk-6.1.0-memset.patch
@@ -0,0 +1,147 @@
+From ef22d3d69421581b33bc0cd94b647da73b61ba96 Mon Sep 17 00:00:00 2001
+From: Anton Gladky <gladk@debian.org>
+Date: Fri, 30 May 2014 23:16:26 +0200
+Subject: [PATCH] Fix compilation by gcc-4.9
+
+VTK fails to build during compilation by gcc-4.9 with the
+following message:
+
+CMakeFiles/vtkFiltersParallelMPI.dir/vtkDistributedDataFilter.cxx.o: In
+function `memset':
+/usr/include/x86_64-linux-gnu/bits/string3.h:81: warning: memset used
+with constant zero length parameter; this could be due to transposed
+parameters
+collect2: error: ld returned 1 exit status
+
+This patch sets if-condition before all "memsets" in
+vtkDistributedDataFilter and checkes, whether the number
+of bytes to be set by memset is more than 0 to escape this
+error.
+---
+ Filters/ParallelMPI/vtkDistributedDataFilter.cxx | 48 ++++++++++++++++++------
+ 1 file changed, 37 insertions(+), 11 deletions(-)
+
+diff --git a/Filters/ParallelMPI/vtkDistributedDataFilter.cxx b/Filters/ParallelMPI/vtkDistributedDataFilter.cxx
+index 3c1ff30..df4b5d3 100644
+--- a/Filters/ParallelMPI/vtkDistributedDataFilter.cxx
++++ b/Filters/ParallelMPI/vtkDistributedDataFilter.cxx
+@@ -1091,7 +1091,10 @@ vtkDataSet *vtkDistributedDataFilter::TestFixTooFewInputFiles(vtkDataSet *input)
+ vtkIdType cellsPerNode = numTotalCells / nprocs;
+
+ vtkIdList **sendCells = new vtkIdList * [ nprocs ];
+- memset(sendCells, 0, sizeof(vtkIdList *) * nprocs);
++
++ if (sizeof(vtkIdList *) * nprocs > 0) {
++ memset(sendCells, 0, sizeof(vtkIdList *) * nprocs);
++ }
+
+ if (numConsumers == nprocs - 1)
+ {
+@@ -1582,7 +1585,9 @@ vtkFloatArray **
+ // Exchange int arrays
+
+ float **recvArrays = new float * [nprocs];
+- memset(recvArrays, 0, sizeof(float *) * nprocs);
++ if (sizeof(float *) * nprocs > 0) {
++ memset(recvArrays, 0, sizeof(float *) * nprocs);
++ }
+
+ if (sendSize[me] > 0) // sent myself an array
+ {
+@@ -1703,7 +1708,9 @@ vtkIdTypeArray **
+ // Exchange int arrays
+
+ vtkIdType **recvArrays = new vtkIdType * [nprocs];
+- memset(recvArrays, 0, sizeof(vtkIdType *) * nprocs);
++ if (sizeof(vtkIdType *) * nprocs > 0) {
++ memset(recvArrays, 0, sizeof(vtkIdType *) * nprocs);
++ }
+
+ if (sendSize[me] > 0) // sent myself an array
+ {
+@@ -2807,7 +2814,9 @@ void vtkDistributedDataFilter::AddConstantUnsignedCharPointArray(
+
+ unsigned char *vals = new unsigned char [npoints];
+
+- memset(vals, val, npoints);
++ if (npoints > 0) {
++ memset(vals, val, npoints);
++ }
+
+ vtkUnsignedCharArray *Array = vtkUnsignedCharArray::New();
+ Array->SetName(arrayName);
+@@ -2827,7 +2836,9 @@ void vtkDistributedDataFilter::AddConstantUnsignedCharCellArray(
+
+ unsigned char *vals = new unsigned char [ncells];
+
+- memset(vals, val, ncells);
++ if (ncells > 0) {
++ memset(vals, val, ncells);
++ }
+
+ vtkUnsignedCharArray *Array = vtkUnsignedCharArray::New();
+ Array->SetName(arrayName);
+@@ -3026,7 +3037,9 @@ int vtkDistributedDataFilter::AssignGlobalNodeIds(vtkUnstructuredGrid *grid)
+ vtkIdType nGridPoints = grid->GetNumberOfPoints();
+
+ vtkIdType *numPointsOutside = new vtkIdType [nprocs];
+- memset(numPointsOutside, 0, sizeof(vtkIdType) * nprocs);
++ if (sizeof(vtkIdType) * nprocs > 0) {
++ memset(numPointsOutside, 0, sizeof(vtkIdType) * nprocs);
++ }
+
+ vtkIdTypeArray *globalIds = vtkIdTypeArray::New();
+ globalIds->SetNumberOfValues(nGridPoints);
+@@ -3108,10 +3121,16 @@ int vtkDistributedDataFilter::AssignGlobalNodeIds(vtkUnstructuredGrid *grid)
+ // global ID back?
+
+ vtkFloatArray **ptarrayOut = new vtkFloatArray * [nprocs];
+- memset(ptarrayOut, 0, sizeof(vtkFloatArray *) * nprocs);
++
++ if (sizeof(vtkFloatArray *) * nprocs > 0) {
++ memset(ptarrayOut, 0, sizeof(vtkFloatArray *) * nprocs);
++ }
+
+ vtkIdTypeArray **localIds = new vtkIdTypeArray * [nprocs];
+- memset(localIds, 0, sizeof(vtkIdTypeArray *) * nprocs);
++
++ if (sizeof(vtkIdTypeArray *) * nprocs > 0) {
++ memset(localIds, 0, sizeof(vtkIdTypeArray *) * nprocs);
++ }
+
+ vtkIdType *next = new vtkIdType [nprocs];
+ vtkIdType *next3 = new vtkIdType [nprocs];
+@@ -3286,7 +3305,9 @@ vtkIdTypeArray **vtkDistributedDataFilter::FindGlobalPointIds(
+ {
+ // There are no cells in my assigned region
+
+- memset(gids, 0, sizeof(vtkIdTypeArray *) * nprocs);
++ if (sizeof(vtkIdTypeArray *) * nprocs > 0) {
++ memset(gids, 0, sizeof(vtkIdTypeArray *) * nprocs);
++ }
+
+ return gids;
+ }
+@@ -3491,7 +3512,10 @@ vtkIdTypeArray **vtkDistributedDataFilter::MakeProcessLists(
+ std::multimap<int, int>::iterator mapIt;
+
+ vtkIdTypeArray **processList = new vtkIdTypeArray * [nprocs];
+- memset(processList, 0, sizeof (vtkIdTypeArray *) * nprocs);
++
++ if (sizeof (vtkIdTypeArray *) * nprocs > 0) {
++ memset(processList, 0, sizeof (vtkIdTypeArray *) * nprocs);
++ }
+
+ for (int i=0; i<nprocs; i++)
+ {
+@@ -3581,7 +3605,9 @@ vtkIdTypeArray **vtkDistributedDataFilter::GetGhostPointIds(
+ vtkIdType numPoints = grid->GetNumberOfPoints();
+
+ vtkIdTypeArray **ghostPtIds = new vtkIdTypeArray * [nprocs];
+- memset(ghostPtIds, 0, sizeof(vtkIdTypeArray *) * nprocs);
++ if (sizeof(vtkIdTypeArray *) * nprocs) {
++ memset(ghostPtIds, 0, sizeof(vtkIdTypeArray *) * nprocs);
++ }
+
+ if (numPoints < 1)
+ {
diff --git a/sci-libs/vtk/files/vtk-6.1.0-netcdf.patch b/sci-libs/vtk/files/vtk-6.1.0-netcdf.patch
new file mode 100644
index 000000000..29e37ae98
--- /dev/null
+++ b/sci-libs/vtk/files/vtk-6.1.0-netcdf.patch
@@ -0,0 +1,29 @@
+diff -up VTK/ThirdParty/netcdf/CMakeLists.txt.netcdf VTK/ThirdParty/netcdf/CMakeLists.txt
+--- a/ThirdParty/netcdf/CMakeLists.txt.netcdf 2013-12-27 20:29:11.644289659 -0700
++++ b/ThirdParty/netcdf/CMakeLists.txt 2013-12-27 20:33:48.071895769 -0700
+@@ -1,10 +1,18 @@
+-vtk_module_third_party(NetCDF
+- LIBRARIES vtkNetCDF vtkNetCDF_cxx
+- INCLUDE_DIRS
+- ${CMAKE_CURRENT_SOURCE_DIR}/vtknetcdf/include
+- ${CMAKE_CURRENT_BINARY_DIR}/vtknetcdf
+- COMPONENTS C CXX
+- )
++if(NOT VTK_USE_SYSTEM_NETCDF)
++ vtk_module_third_party(NetCDF
++ LIBRARIES vtkNetCDF vtkNetCDF_cxx
++ INCLUDE_DIRS
++ ${CMAKE_CURRENT_SOURCE_DIR}/vtknetcdf/include
++ ${CMAKE_CURRENT_BINARY_DIR}/vtknetcdf
++ COMPONENTS C CXX
++ )
++else(NOT VTK_USE_SYSTEM_NETCDF)
++ vtk_module_third_party(NetCDF
++ LIBRARIES vtkNetCDF netcdf
++ COMPONENTS C CXX
++ )
++endif()
++
+
+ #Configure the top cpp header to switch between system and internal
+ #netcdf just like vtk_module_third_party does for the c header.
diff --git a/sci-libs/vtk/files/vtk-6.1.0-system.patch b/sci-libs/vtk/files/vtk-6.1.0-system.patch
new file mode 100644
index 000000000..5395355c6
--- /dev/null
+++ b/sci-libs/vtk/files/vtk-6.1.0-system.patch
@@ -0,0 +1,27 @@
+diff -up VTK/CMake/vtkModuleMacros.cmake.system VTK/CMake/vtkModuleMacros.cmake
+--- a/CMake/vtkModuleMacros.cmake.system 2013-12-24 19:17:43.000000000 -0700
++++ b/CMake/vtkModuleMacros.cmake 2013-12-27 20:28:22.375573277 -0700
+@@ -682,7 +682,7 @@ macro(vtk_module_third_party _pkg)
+ message(FATAL_ERROR "Cannot specify both LIBRARIES and NO_LIBRARIES")
+ endif()
+
+- option(VTK_USE_SYSTEM_${_upper} "Use system-installed ${_pkg}" OFF)
++ option(VTK_USE_SYSTEM_${_upper} "Use system-installed ${_pkg}" ${VTK_USE_SYSTEM_LIBRARIES})
+ mark_as_advanced(VTK_USE_SYSTEM_${_upper})
+
+ if(VTK_USE_SYSTEM_${_upper})
+diff -up VTK/CMakeLists.txt.system VTK/CMakeLists.txt
+--- a/CMakeLists.txt.system 2013-12-27 20:28:22.374573241 -0700
++++ b/CMakeLists.txt 2013-12-27 20:28:48.118669708 -0700
+@@ -132,6 +132,11 @@ if (CMAKE_CROSSCOMPILING AND NOT COMPILE
+ endif()
+
+ #-----------------------------------------------------------------------------
++# Do we try to use system libraries by default?
++OPTION(VTK_USE_SYSTEM_LIBRARIES "Use the system's libraries by default." OFF)
++MARK_AS_ADVANCED(VTK_USE_SYSTEM_LIBRARIES)
++
++#-----------------------------------------------------------------------------
+ # The third party macros are still used in one or two third party builds.
+ include(vtkThirdParty)
+
diff --git a/sci-libs/vtk/files/vtk-6.1.0-web.patch b/sci-libs/vtk/files/vtk-6.1.0-web.patch
new file mode 100644
index 000000000..a85f2cd99
--- /dev/null
+++ b/sci-libs/vtk/files/vtk-6.1.0-web.patch
@@ -0,0 +1,25 @@
+From 58373b120db6d51c6d5eace38447cdb45ff858d1 Mon Sep 17 00:00:00 2001
+From: Patric Schmitz <patric.schmitz@rwth-aachen.de>
+Date: Tue, 28 Oct 2014 16:24:22 +0100
+Subject: [PATCH] Include vtkPythonPackages in Web/JavaScript/CMakeLists.txt
+
+Change-Id: Ie7bffa19bdaa78c5b090c886e50c1af76e2aadee
+---
+ Web/Applications/CMakeLists.txt | 1 +
+ 1 file changed, 1 insertion(+)
+
+diff --git a/Web/Applications/CMakeLists.txt b/Web/Applications/CMakeLists.txt
+index c9e7ad3..b4c9a60 100644
+--- a/Web/Applications/CMakeLists.txt
++++ b/Web/Applications/CMakeLists.txt
+@@ -12,6 +12,7 @@ set(WEB_APPLICATIONS
+
+ set(WEB_APPS_DEPENDS)
+
++include(vtkPythonPackages) # for copy_files_recursive
+ foreach(_app ${WEB_APPLICATIONS})
+ file(MAKE_DIRECTORY "${VTK_WWW_DIR}/apps/${_app}")
+
+--
+2.2.1
+
diff --git a/sci-libs/vtk/metadata.xml b/sci-libs/vtk/metadata.xml
new file mode 100644
index 000000000..6caa274e5
--- /dev/null
+++ b/sci-libs/vtk/metadata.xml
@@ -0,0 +1,35 @@
+<?xml version='1.0' encoding='UTF-8'?>
+<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<pkgmetadata>
+ <!--
+ <maintainer type="project">
+ <email>sci@gentoo.org</email>
+ <name>Gentoo Science Project</name>
+ </maintainer>
+ <maintainer type="project">
+ <email>java@gentoo.org</email>
+ <name>Java</name>
+ </maintainer>
+ -->
+ <maintainer>
+ <email>harald.weiner@jku.at</email>
+ <name>Harald Weiner</name>
+ </maintainer>
+ <use>
+ <flag name="all-modules">Build all modules</flag>
+ <flag name="boost">Add support for boost</flag>
+ <flag name="cg">Use nvidia's cg shaders</flag>
+ <flag name="gdal">Support for gdal formated data</flag>
+ <flag name="imaging">Building Imaging modules</flag>
+ <flag name="json">Support for json formated data</flag>
+ <flag name="kaapi">Use <pkg>sci-libs/xkaapi</pkg> to handle smp support</flag>
+ <flag name="offscreen">Offscreen rendering through OSMesa</flag>
+ <flag name="rendering">Building Redering modules</flag>
+ <flag name="tbb">Use <pkg>dev-cpp/tbb</pkg> to handle smp support</flag>
+ <flag name="views">Building Views modules</flag>
+ <flag name="web">Install web component</flag>
+ <flag name="xdmf2">Support for xdmf2 formated data</flag>
+ <flag name="R">Enable support for dev-lang/R</flag>
+ </use>
+</pkgmetadata>
+ \ No newline at end of file
diff --git a/sci-libs/vtk/vtk-6.1.0-r3.ebuild b/sci-libs/vtk/vtk-6.1.0-r3.ebuild
new file mode 100644
index 000000000..3365d9afb
--- /dev/null
+++ b/sci-libs/vtk/vtk-6.1.0-r3.ebuild
@@ -0,0 +1,420 @@
+# Copyright 1999-2016 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Id$
+
+EAPI=6
+
+PYTHON_COMPAT=( python2_7 )
+CMAKE_MAKEFILE_GENERATOR=ninja
+WEBAPP_OPTIONAL=yes
+WEBAPP_MANUAL_SLOT=yes
+
+inherit eutils flag-o-matic java-pkg-opt-2 python-single-r1 qmake-utils versionator toolchain-funcs cmake-utils virtualx webapp
+
+# Short package version
+SPV="$(get_version_component_range 1-2)"
+
+DESCRIPTION="The Visualization Toolkit"
+HOMEPAGE="http://www.vtk.org/"
+SRC_URI="
+ http://www.${PN}.org/files/release/${SPV}/VTK-${PV}.tar.gz
+ doc? ( http://www.${PN}.org/files/release/${SPV}/${PN}DocHtml-${PV}.tar.gz )
+ test? (
+ http://www.${PN}.org/files/release/${SPV}/VTKData-${PV}.tar.gz
+ http://www.${PN}.org/files/release/${SPV}/VTKLargeData-${PV}.tar.gz
+ )
+ "
+
+LICENSE="BSD LGPL-2"
+#KEYWORDS="~arm ~x86 ~amd64-linux ~x86-linux"
+KEYWORDS="~amd64 ~x86"
+SLOT="0"
+IUSE="
+ all-modules aqua boost cg doc examples imaging ffmpeg gdal java json kaapi mpi
+ mysql odbc offscreen postgres python qt4 qt5 rendering smp tbb test theora tk
+ tcl video_cards_nvidia views web xdmf2 R +X"
+
+REQUIRED_USE="
+ all-modules? ( python xdmf2 )
+ java? ( || ( qt4 qt5 ) )
+ python? ( ${PYTHON_REQUIRED_USE} )
+ tcl? ( rendering )
+ smp? ( ^^ ( kaapi tbb ) )
+ test? ( python )
+ tk? ( tcl )
+ web? ( python )
+ ^^ ( X aqua offscreen )
+ ^^ ( qt4 qt5 )
+ "
+
+RDEPEND="
+ dev-libs/expat
+ dev-libs/jsoncpp
+ dev-libs/libxml2:2
+ >=media-libs/freetype-2.5.4
+ media-libs/libpng:0
+ media-libs/mesa
+ media-libs/libtheora
+ media-libs/tiff:0
+ sci-libs/exodusii
+ sci-libs/hdf5:=
+ sci-libs/netcdf-cxx:3
+ sys-libs/zlib
+ virtual/jpeg:0
+ virtual/opengl
+ >=x11-libs/gl2ps-1.3.8
+ x11-libs/libX11
+ x11-libs/libXmu
+ x11-libs/libXt
+ boost? ( >=dev-libs/boost-1.40.0[mpi?] )
+ cg? ( media-gfx/nvidia-cg-toolkit )
+ examples? (
+ dev-qt/qtcore:4
+ dev-qt/qtgui:4
+ sci-libs/vtkdata
+ )
+ ffmpeg? ( virtual/ffmpeg )
+ gdal? ( sci-libs/gdal )
+ java? ( >=virtual/jre-1.5:* )
+ kaapi? ( <sci-libs/xkaapi-3 )
+ mpi? (
+ virtual/mpi[cxx,romio]
+ python? ( dev-python/mpi4py[${PYTHON_USEDEP}] )
+ mysql? ( virtual/mysql )
+ odbc? ( dev-db/unixODBC )
+ offscreen? ( media-libs/mesa[osmesa] )
+ postgres? ( dev-db/postgresql:= )
+ python? (
+ ${PYTHON_DEPS}
+ dev-python/sip[${PYTHON_USEDEP}]
+ )
+ )
+ qt4? (
+ dev-qt/designer:4
+ dev-qt/qtcore:4
+ dev-qt/qtgui:4
+ dev-qt/qtopengl:4
+ dev-qt/qtsql:4
+ dev-qt/qtwebkit:4
+ python? ( dev-python/PyQt4[${PYTHON_USEDEP}] )
+ )
+ qt5? (
+ dev-qt/designer:5
+ dev-qt/qtcore:5
+ dev-qt/qtgui:5
+ dev-qt/qtopengl:5
+ dev-qt/qtsql:5
+ dev-qt/qtwebkit:5
+ python? ( dev-python/PyQt5[${PYTHON_USEDEP}] )
+ )
+ tbb? ( dev-cpp/tbb )
+ tcl? ( dev-lang/tcl:0= )
+ tk? ( dev-lang/tk:0= )
+ video_cards_nvidia? ( media-video/nvidia-settings )
+ web? (
+ ${WEBAPP_DEPEND}
+ python? (
+ dev-python/autobahn[${PYTHON_USEDEP}]
+ dev-python/twisted-core[${PYTHON_USEDEP}]
+ dev-python/zope-interface[${PYTHON_USEDEP}]
+ )
+ )
+ xdmf2? ( sci-libs/xdmf2 )
+ R? ( dev-lang/R )"
+DEPEND="${RDEPEND}
+ doc? ( app-doc/doxygen )
+ java? ( >=virtual/jdk-1.5 )"
+
+S="${WORKDIR}"/VTK-${PV}
+
+PATCHES=(
+ "${FILESDIR}"/${P}-freetype.patch
+ "${FILESDIR}"/${P}-install.patch
+ "${FILESDIR}"/${P}-system.patch
+ "${FILESDIR}"/${P}-netcdf.patch
+ "${FILESDIR}"/${P}-web.patch
+ "${FILESDIR}"/${P}-glext.patch
+ "${FILESDIR}"/${P}-memset.patch
+ "${FILESDIR}"/${P}-gdal2.patch
+ )
+
+RESTRICT=test
+
+pkg_setup() {
+ use java && java-pkg-opt-2_pkg_setup
+ use python && python-single-r1_pkg_setup
+ use web && webapp_pkg_setup
+
+ append-cppflags -D__STDC_CONSTANT_MACROS -D_UNICODE
+}
+
+src_prepare() {
+ sed \
+ -e 's:libproj4:libproj:g' \
+ -e 's:lib_proj.h:lib_abi.h:g' \
+ -i CMake/FindLIBPROJ4.cmake || die
+
+ local x
+ # missing: VPIC alglib exodusII freerange ftgl libproj4 mrmpi sqlite utf8 verdict xmdf2 xmdf3
+ for x in expat freetype gl2ps hdf5 jpeg jsoncpp libxml2 netcdf oggtheora png tiff zlib; do
+ ebegin "Dropping bundled ${x}"
+ rm -r ThirdParty/${x}/vtk${x} || die
+ eend $?
+ done
+ rm -r \
+ ThirdParty/AutobahnPython/autobahn \
+ ThirdParty/Twisted/twisted \
+ ThirdParty/ZopeInterface/zope \
+ || die
+
+ use java && export JAVA_HOME="${EPREFIX}/etc/java-config-2/current-system-vm"
+
+ if use mpi; then
+ export CC=mpicc
+ export CXX=mpicxx
+ export FC=mpif90
+ export F90=mpif90
+ export F77=mpif77
+ fi
+
+ cmake-utils_src_prepare
+}
+
+src_configure() {
+ # general configuration
+ local mycmakeargs=(
+ -Wno-dev
+# -DCMAKE_SKIP_RPATH=YES
+ -DVTK_DIR="${S}"
+ -DVTK_INSTALL_LIBRARY_DIR=$(get_libdir)
+ -DVTK_DATA_ROOT:PATH="${EPREFIX}/usr/share/${PN}/data"
+ -DCMAKE_INSTALL_PREFIX="${EPREFIX}/usr"
+ -DVTK_CUSTOM_LIBRARY_SUFFIX=""
+ -DBUILD_SHARED_LIBS=ON
+ -DVTK_USE_SYSTEM_AUTOBAHN=ON
+ -DVTK_USE_SYSTEM_EXPAT=ON
+ -DVTK_USE_SYSTEM_FREETYPE=ON
+ -DVTK_USE_SYSTEM_FreeType=ON
+ -DVTK_USE_SYSTEM_GL2PS=ON
+ -DVTK_USE_SYSTEM_HDF5=ON
+ -DVTK_USE_SYSTEM_JPEG=ON
+ -DVTK_USE_SYSTEM_LIBPROJ4=OFF
+# -DLIBPROJ4_DIR="${EPREFIX}/usr"
+ -DVTK_USE_SYSTEM_LIBXML2=ON
+ -DVTK_USE_SYSTEM_LibXml2=ON
+ -DVTK_USE_SYSTEM_NETCDF=ON
+ -DVTK_USE_SYSTEM_OGGTHEORA=ON
+ -DVTK_USE_SYSTEM_PNG=ON
+ -DVTK_USE_SYSTEM_TIFF=ON
+ -DVTK_USE_SYSTEM_TWISTED=ON
+ -DVTK_USE_SYSTEM_XDMF2=OFF
+ -DVTK_USE_SYSTEM_XDMF3=OFF
+ -DVTK_USE_SYSTEM_ZLIB=ON
+ -DVTK_USE_SYSTEM_ZOPE=ON
+ -DVTK_USE_SYSTEM_LIBRARIES=ON
+ -DVTK_USE_GL2PS=ON
+ -DVTK_USE_LARGE_DATA=ON
+ -DVTK_USE_PARALLEL=ON
+ )
+
+ mycmakeargs+=(
+ -DVTK_EXTRA_COMPILER_WARNINGS=ON
+ -DVTK_Group_StandAlone=ON
+ )
+
+ mycmakeargs+=(
+ -DBUILD_DOCUMENTATION="$(usex doc)"
+ -DBUILD_EXAMPLES="$(usex examples)"
+ -DBUILD_VTK_BUILD_ALL_MODULES_FOR_TESTS="$(usex test)"
+ -DVTK_BUILD_ALL_MODULES="$(usex all-modules)"
+ -DDOCUMENTATION_HTML_HELP="$(usex doc)"
+ -DVTK_Group_Imaging="$(usex imaging)"
+ -DVTK_Group_MPI="$(usex mpi)"
+ -DVTK_Group_Qt="$(usex qt4)"
+ -DVTK_Group_Rendering="$(usex rendering)"
+ -DVTK_Group_Tk="$(usex tk)"
+ -DVTK_Group_Views="$(usex views)"
+ -DVTK_Group_Web="$(usex web)"
+ # How to convert this to EAPI 6???
+ #$(cmake-utils_use web VTK_WWW_DIR="${ED}/${MY_HTDOCSDIR}")
+ -DVTK_WRAP_JAVA="$(usex java)"
+ -DVTK_WRAP_PYTHON="$(usex python)"
+ -DVTK_WRAP_PYTHON_SIP="$(usex python)"
+ -DVTK_WRAP_TCL="$(usex tcl)"
+ )
+
+ mycmakeargs+=(
+ -DVTK_USE_BOOST="$(usex boost)"
+ -DVTK_USE_CG_SHADERS="$(usex cg)"
+ -DVTK_USE_ODBC="$(usex odbc)"
+ -DVTK_USE_OFFSCREEN="$(usex offscreen)"
+ -DVTK_OPENGL_HAS_OSMESA="$(usex offscreen)"
+ -DvtkFiltersSMP="$(usex smp)"
+ -DVTK_USE_OGGTHEORA_ENCODER="$(usex theora)"
+ -DVTK_USE_NVCONTROL="$(usex video_cards_nvidia)"
+ -DModule_vtkFiltersStatisticsGnuR="$(usex R)"
+ -DVTK_USE_X="$(usex X)"
+ )
+
+ # IO
+ mycmakeargs+=(
+ -DVTK_USE_FFMPEG_ENCODER="$(usex ffmpeg)"
+ -DModule_vtkIOGDAL="$(usex gdal)"
+ -DModule_vtkIOGeoJSON="$(usex json)"
+ -DModule_vtkIOXdmf2="$(usex xdmf2)"
+ )
+ # Apple stuff, does it really work?
+ mycmakeargs+=( -DVTK_USE_COCOA="$(usex aqua)" )
+
+ if use examples || use test; then
+ mycmakeargs+=( -DBUILD_TESTING=ON )
+ fi
+
+ if use kaapi; then
+ mycmakeargs+=( -DVTK_SMP_IMPLEMENTATION_TYPE="Kaapi" )
+ elif use tbb; then
+ mycmakeargs+=( -DVTK_SMP_IMPLEMENTATION_TYPE="TBB" )
+ else
+ mycmakeargs+=( -DVTK_SMP_IMPLEMENTATION_TYPE="Sequential" )
+ fi
+
+ if use java; then
+# local _ejavahome=${EPREFIX}/etc/java-config-2/current-system-vm
+#
+# mycmakeargs+=(
+# -DJAVAC=${EPREFIX}/usr/bin/javac
+# -DJAVAC=$(java-config -c)
+# -DJAVA_AWT_INCLUDE_PATH=${JAVA_HOME}/include
+# -DJAVA_INCLUDE_PATH:PATH=${JAVA_HOME}/include
+# -DJAVA_INCLUDE_PATH2:PATH=${JAVA_HOME}/include/linux
+# )
+#
+ if [ "${ARCH}" == "amd64" ]; then
+ mycmakeargs+=( -DJAVA_AWT_LIBRARY="${JAVA_HOME}/jre/lib/${ARCH}/libjawt.so;${JAVA_HOME}/jre/lib/${ARCH}/xawt/libmawt.so" )
+ else
+ mycmakeargs+=( -DJAVA_AWT_LIBRARY="${JAVA_HOME}/jre/lib/i386/libjawt.so;${JAVA_HOME}/jre/lib/i386/xawt/libmawt.so" )
+ fi
+ fi
+ if use python; then
+ mycmakeargs+=(
+ -DVTK_INSTALL_PYTHON_MODULE_DIR="$(python_get_sitedir)"
+ -DPYTHON_INCLUDE_DIR="$(python_get_includedir)"
+ -DPYTHON_LIBRARY="$(python_get_library_path)"
+ -DSIP_PYQT_DIR="${EPREFIX}/usr/share/sip"
+ -DSIP_INCLUDE_DIR="$(python_get_includedir)"
+ -DVTK_PYTHON_INCLUDE_DIR="$(python_get_includedir)"
+ -DVTK_PYTHON_LIBRARY="$(python_get_library_path)"
+ -DVTK_PYTHON_SETUP_ARGS:STRING="--prefix=${PREFIX} --root=${D}"
+ )
+ fi
+
+ if use qt4; then
+ mycmakeargs+=(
+ -DVTK_USE_QVTK=ON
+ -DVTK_USE_QVTK_OPENGL=ON
+ -DVTK_USE_QVTK_QTOPENGL=ON
+ -DQT_WRAP_CPP=ON
+ -DQT_WRAP_UI=ON
+ -DVTK_INSTALL_QT_DIR=/$(get_libdir)/qt4/plugins/designer
+ -DDESIRED_QT_VERSION=4
+ -DVTK_QT_VERSION=4
+ -DQT_MOC_EXECUTABLE="$(qt4_get_bindir)/moc"
+ -DQT_UIC_EXECUTABLE="$(qt4_get_bindir)/uic"
+ -DQT_INCLUDE_DIR="${EPREFIX}/usr/include/qt4"
+ -DQT_QMAKE_EXECUTABLE="$(qt4_get_bindir)/qmake"
+ )
+ fi
+
+ if use qt5; then
+ mycmakeargs+=(
+ -DVTK_USE_QVTK=ON
+ -DVTK_USE_QVTK_OPENGL=ON
+ -DVTK_USE_QVTK_QTOPENGL=ON
+ -DQT_WRAP_CPP=ON
+ -DQT_WRAP_UI=ON
+ -DVTK_INSTALL_QT_DIR=/$(get_libdir)/qt5/plugins/designer
+ -DDESIRED_QT_VERSION=5
+ -DVTK_QT_VERSION=5
+ -DQT_MOC_EXECUTABLE="$(qt5_get_bindir)/moc"
+ -DQT_UIC_EXECUTABLE="$(qt5_get_bindir)/uic"
+ -DQT_INCLUDE_DIR="${EPREFIX}/usr/include/qt5"
+ -DQT_QMAKE_EXECUTABLE="$(qt5_get_bindir)/qmake"
+ -DVTK_Group_Qt:BOOL=ON
+ )
+ fi
+
+ if use R; then
+ mycmakeargs+=(
+# -DR_LIBRARY_BLAS=$($(tc-getPKG_CONFIG) --libs blas)
+# -DR_LIBRARY_LAPACK=$($(tc-getPKG_CONFIG) --libs lapack)
+ -DR_LIBRARY_BLAS=/usr/$(get_libdir)/R/lib/libR.so
+ -DR_LIBRARY_LAPACK=/usr/$(get_libdir)/R/lib/libR.so
+ )
+ fi
+
+ cmake-utils_src_configure
+}
+
+src_test() {
+ local tcllib
+ ln -sf "${BUILD_DIR}"/lib "${BUILD_DIR}"/lib/Release || die
+ for tcllib in "${BUILD_DIR}"/lib/lib*TCL*so; do
+ ln -sf $(basename "${tcllib}").1 "${tcllib/.so/-${SPV}.so}" || die
+ done
+ export LD_LIBRARY_PATH="${BUILD_DIR}"/lib:"${JAVA_HOME}"/jre/lib/${ARCH}/:"${JAVA_HOME}"/jre/lib/${ARCH}/xawt/
+ local VIRTUALX_COMMAND="cmake-utils_src_test"
+# local VIRTUALX_COMMAND="cmake-utils_src_test -R Java"
+# local VIRTUALX_COMMAND="cmake-utils_src_test -I 364,365"
+ virtualmake
+}
+
+src_install() {
+ use web && webapp_src_preinst
+ # install docs
+ HTML_DOCS=( "${S}"/README.html )
+
+ cmake-utils_src_install
+
+ use java && java-pkg_regjar "${ED}"/usr/$(get_libdir)/${PN}.jar
+
+ if use tcl; then
+ # install Tcl docs
+ docinto vtk_tcl
+ dodoc "${S}"/Wrapping/Tcl/README
+ fi
+
+ # install examples
+ if use examples; then
+ insinto /usr/share/${PN}
+ mv -v Examples examples || die
+ doins -r examples
+ fi
+
+ #install big docs
+ if use doc; then
+ cd "${WORKDIR}"/html || die
+ rm -f *.md5 || die "Failed to remove superfluous hashes"
+ einfo "Installing API docs. This may take some time."
+ docinto html
+ dodoc -r ./*
+ fi
+
+ # environment
+ cat >> "${T}"/40${PN} <<- EOF
+ VTK_DATA_ROOT=${EPREFIX}/usr/share/${PN}/data
+ VTK_DIR=${EPREFIX}/usr/$(get_libdir)/${PN}-${SPV}
+ VTKHOME=${EPREFIX}/usr
+ EOF
+ doenvd "${T}"/40${PN}
+
+ use web && webapp_src_install
+}
+
+# webapp.eclass exports these but we want it optional #534036
+pkg_postinst() {
+ use web && webapp_pkg_postinst
+}
+
+pkg_prerm() {
+ use web && webapp_pkg_prerm
+}