sci-libs/bigdft removed. Superseded by sci-physics/bigdft and sci-libs/bigdft-abi

14 files changed, 0 insertions, 907 deletions

diff --git a/sci-libs/bigdft/ChangeLog b/sci-libs/bigdft/ChangeLog
deleted file mode 100644
index 812748003..000000000
--- a/sci-libs/bigdft/ChangeLog
+++ /dev/null
@@ -1,139 +0,0 @@
-# ChangeLog for sci-libs/bigdft
-# Copyright 1999-2013 Gentoo Foundation; Distributed under the GPL v2
-# $Header: $
-
-  03 Mar 2013; Justin Lecher <jlec@gentoo.org> bigdft-1.7_pre12.ebuild:
-  Fix issue 52
-
-  03 Mar 2013; Justin Lecher <jlec@gentoo.org> bigdft-1.7_pre12.ebuild:
-  Fix issue 52
-
-  22 Feb 2013; Justin Lecher <jlec@gentoo.org> -bigdft-1.6_pre1-r4.ebuild,
-  bigdft-1.6.0-r2.ebuild, bigdft-1.7_pre12.ebuild, metadata.xml:
-  Use tc-getPKG_CONFIG from toolchain-funcs.eclass instead of plain pkg-config;
-  drop old
-
-  20 Feb 2013; Honza Macháček <Hloupy.Honza@centrum.cz>
-  bigdft-1.7_pre12.ebuild:
-  The setup of python for the compilation of the GPU support in
-  bigdft-1.7_pre12 improved.
-
-  20 Feb 2013; Honza Macháček <Hloupy.Honza@centrum.cz>
-  bigdft-1.7_pre12.ebuild, +files/bigdft-1.7-dev.12-GPUlink.patch:
-  Compilation of GPU support in bigdft-1.7_pre12 improved. Yet to be tested.
-
-*bigdft-1.7_pre12 (17 Jan 2013)
-
-  17 Jan 2013; Honza Macháček <Hloupy.Honza@centrum.cz>
-  +bigdft-1.7_pre12.ebuild, +files/bigdft-1.7-dev.12-libxc_dir_include.patch,
-  +files/bigdft-1.7-dev.12-nolib_mods.patch,
-  +files/bigdft-1.7-dev.12-tests.tar.bz2:
-  New version 1.7-dev.12 (1.7_pre12) from the Abinit site added; used by
-  sci-physics/abinit-7.0.4 but apparently segfaults it.
-
-*bigdft-1.6_pre1-r4 (01 Sep 2012)
-
-  01 Sep 2012; Honza Macháček <Hloupy.Honza@centrum.cz>
-  -bigdft-1.6_pre1-r3.ebuild, +bigdft-1.6_pre1-r4.ebuild,
-  -files/bigdft-1.6-tuto.1-GPUlibs.patch,
-  +files/bigdft-1.6-tuto.1-GPUlibs-1.patch,
-  -files/bigdft-1.6-tuto.1-bigdft.pc.patch,
-  +files/bigdft-1.6-tuto.1-bigdft.pc-1.patch:
-  Patches to install GPU support corrected not to break linking against the
-  compiled libraries
-
-  10 Jul 2012; Honza Macháček <Hloupy.Honza@centrum.cz>
-  files/bigdft-1.6-tuto.1-GPUlibs.patch:
-  bigdft-1.6-tuto.1-GPUlibs.patch updated not to forget the pkg-config file
-
-*bigdft-1.6_pre1-r3 (04 Jul 2012)
-
-  04 Jul 2012; Honza Macháček <Hloupy.Honza@centrum.cz>
-  -bigdft-1.6_pre1-r2.ebuild, +bigdft-1.6_pre1-r3.ebuild,
-  +files/bigdft-1.6-tuto.1-GPUlibs.patch,
-  +files/bigdft-1.6-tuto.1-gcc-4.6.patch:
-  bigdft-1.6_pre1 from -r2 to -r3: patched to install necessary libraries for
-  GPU support and to compile with gcc-4.6
-
-  22 Jun 2012; Alexey Shvetsov <alexxy@gentoo.org> bigdft-1.6.0-r2.ebuild,
-  bigdft-1.6_pre1-r2.ebuild:
-  [sci-libs/bigdft] add ~amd64-linux
-
-*bigdft-1.6.0-r2 (19 Jun 2012)
-*bigdft-1.6_pre1-r2 (19 Jun 2012)
-
-  19 Jun 2012; Honza Macháček <Hloupy.Honza@centrum.cz>
-  -bigdft-1.6_pre1-r1.ebuild, +bigdft-1.6_pre1-r2.ebuild,
-  -bigdft-1.6.0-r1.ebuild, +bigdft-1.6.0-r2.ebuild:
-  Reflect the split of the fortran interface out of sci-libs/netcdf
-
-  22 May 2012; Justin Lecher <jlec@gentoo.org> bigdft-1.6_pre1-r1.ebuild,
-  bigdft-1.6.0-r1.ebuild:
-  Add missing eutils.eclass, bump to EAPI=4, remove unnecessary bits
-
-*bigdft-1.6.0-r1 (15 May 2012)
-*bigdft-1.6_pre1-r1 (15 May 2012)
-
-  15 May 2012; Honza Macháček <Hloupy.Honza@centrum.cz>
-  -bigdft-1.6_pre1.ebuild, +bigdft-1.6_pre1-r1.ebuild, -bigdft-1.6.0.ebuild,
-  +bigdft-1.6.0-r1.ebuild:
-  pkg-config file corrected
-
-  30 Mar 2012; Honza Macháček <Hloupy.Honza@centrum.cz>
-  -bigdft-1.2.0.2.ebuild, -files/bigdft-1.2.0.2-0001.patch,
-  -files/bigdft-1.2.0.2-0002.patch, -files/bigdft-1.2.0.2-0003.patch,
-  -files/bigdft-1.2.0.2-0004.patch, -files/bigdft-1.2.0.2-testH.patch,
-  -bigdft-1.2.0.5.ebuild, -files/bigdft-1.2.0.5-0001.patch,
-  -bigdft-1.6_pre0.ebuild, -files/bigdft-1.6-tuto-bigdft.pc.patch,
-  -files/bigdft-1.6-tuto-libxc_dir_include.patch:
-  Clean-up.
-
-*bigdft-1.6_pre1 (22 Mar 2012)
-*bigdft-1.6_pre0 (22 Mar 2012)
-
-  22 Mar 2012; Honza Macháček <Hloupy.Honza@centrum.cz>
-  +bigdft-1.2.0.2.ebuild, +bigdft-1.2.0.5.ebuild, +bigdft-1.6_pre0.ebuild,
-  +bigdft-1.6_pre1.ebuild, bigdft-1.6.0.ebuild,
-  +files/bigdft-1.6.0-libxc_dir_include.patch,
-  +files/bigdft-1.6-tuto.1-bigdft.pc.patch,
-  +files/bigdft-1.6-tuto.1-libxc_dir_include.patch,
-  +files/bigdft-1.6-tuto-bigdft.pc.patch,
-  +files/bigdft-1.6-tuto-libxc_dir_include.patch:
-  Old versions used by old versions of abinit ressurected. May be removed
-  forever if nobody complains about the latest abinit. 1.6.0 corrected,
-  1.6_pre0 and 1.6_pre1 added; 1.6_pre1 is used by sci-physics/abinit-6.12.1.
-
-*bigdft-1.6.0 (18 Feb 2012)
-
-  18 Feb 2012; Justin Lecher <jlec@gentoo.org> -bigdft-1.2.0.2.ebuild,
-  -bigdft-1.2.0.5.ebuild, +bigdft-1.6.0.ebuild, metadata.xml:
-  Move to EAPI=4 and autotools-util.eclass
-
-*bigdft-1.2.0.5 (14 Dec 2011)
-
-  14 Dec 2011; Honza Macháček <Hloupy.Honza@centrum.cz>
-  bigdft-1.2.0.2.ebuild, +bigdft-1.2.0.5.ebuild,
-  +files/bigdft-1.2.0.5-0001.patch:
-  Version bump to 1.2.0.5 for sci-physics/abinit-6.10.3; still not much
-  progress towards the current version (1.5.2 and 1.6-tuto)
-
-  11 Jul 2011; Honza Macháček <Hloupy.Honza@centrum.cz>
-  bigdft-1.2.0.2.ebuild:
-  The MPI support, broken by fortran-2.eclass usage, made work again.
-
-  24 Jun 2011; Justin Lecher <jlec@gentoo.org> bigdft-1.2.0.2.ebuild:
-  Streamlined fortran-2 eclass usage
-
-  21 Jun 2011; Justin Lecher <jlec@gentoo.org> bigdft-1.2.0.2.ebuild,
-  +metadata.xml:
-  Added fortran-2.eclass support
-
-*bigdft-1.2.0.2 (17 Jan 2011)
-
-  17 Jan 2011; Honza Macháček <Hloupy.Honza@centrum.cz>
-  +bigdft-1.2.0.2.ebuild, +files/bigdft-1.2.0.2-0001.patch,
-  +files/bigdft-1.2.0.2-0002.patch, +files/bigdft-1.2.0.2-0003.patch,
-  +files/bigdft-1.2.0.2-0004.patch, +files/bigdft-1.2.0.2-testH.patch:
-  A bigDFT ebuild for sci-physics/abinit; not the latest version but the abinit
-  compatible one.
-
diff --git a/sci-libs/bigdft/Manifest b/sci-libs/bigdft/Manifest
deleted file mode 100644
index a828ad66e..000000000
--- a/sci-libs/bigdft/Manifest
+++ /dev/null
@@ -1,2 +0,0 @@
-DIST bigdft-1.6.0.tar.gz 8876759 SHA256 2d3212ef5f1ebc10fe7c627397ac6282ad41e1433ec6e66905f9d39a302913c0 SHA512 facbb78d126885dd04fed6451aa9cd1f5c755055e146cda1d2d4e90e3310fc3066b661635477db96d5b143ffaaa3ebb01107681437fd9965f3c764cf1b034361 WHIRLPOOL 97bc6c28296a92b09139e3a65266daa583011620fad5aed208e0e48627ab1d9c0ef9993d6c4c3cce5696d5c707bcdfb4b8ca7e64379909b3cf073206e32f9572
-DIST bigdft-1.7-dev.12.tar.gz 8904633 SHA256 2f899f287dd508dc616fb798cc9d01d1c79951dc68c277fb0ce19ea0ad690332 SHA512 35efe93edd7e6fb08abe919c59913c173f23e17a50104ad92e510dba5ba35ba8117012249d620896affc8acc05c9d85c6c61a411bc903750db6593456e9e8142 WHIRLPOOL 94a8d6d25fe82f3f1b89d15b4e23293d018bfb66c96fd1061a09e6352fb6811e79a15161bd3ca92e5f544253c8fa9f919d41fe069635ac07f33e21cc70878719
diff --git a/sci-libs/bigdft/bigdft-1.6.0-r2.ebuild b/sci-libs/bigdft/bigdft-1.6.0-r2.ebuild
deleted file mode 100644
index e43d7e45b..000000000
--- a/sci-libs/bigdft/bigdft-1.6.0-r2.ebuild
+++ /dev/null
@@ -1,122 +0,0 @@
-# Copyright 1999-2013 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Header: $
-
-EAPI=4
-
-inherit autotools-utils eutils flag-o-matic fortran-2 toolchain-funcs
-
-REAL_P="${P/_pre0/-tuto}"
-
-DESCRIPTION="A DFT electronic structure code using a wavelet basis set"
-HOMEPAGE="http://inac.cea.fr/L_Sim/BigDFT/"
-SRC_URI="http://inac.cea.fr/L_Sim/BigDFT/${REAL_P}.tar.gz"
-
-LICENSE="GPL-3"
-SLOT="0"
-KEYWORDS="~amd64 ~x86 ~amd64-linux"
-IUSE="cuda doc etsf_io mpi netcdf opencl test"
-
-RDEPEND="
-	=sci-libs/libxc-1*[fortran]
-	virtual/blas
-	virtual/fortran
-	virtual/lapack
-	mpi? ( virtual/mpi )
-	cuda? ( dev-util/nvidia-cuda-sdk )
-	opencl? (
-		|| (
-			dev-util/nvidia-cuda-sdk
-			dev-util/amdstream
-			)
-		)
-	etsf_io? ( sci-libs/etsf_io )
-	netcdf? ( || (
-				sci-libs/netcdf[fortran]
-				sci-libs/netcdf-fortran
-				)
-			)"
-DEPEND="${RDEPEND}
-	virtual/pkgconfig
-	>=sys-devel/autoconf-2.59
-	doc? ( virtual/latex-base )"
-
-S="${WORKDIR}/${REAL_P}"
-
-DOCS=( README INSTALL ChangeLog AUTHORS NEWS )
-
-FORTRAN_STANDARD=90
-
-pkg_setup() {
-	# fortran-2.eclass does not handle mpi wrappers
-	if use mpi; then
-		export FC="mpif90"
-		export F77="mpif77"
-		export CC="mpicc"
-	else
-		tc-export FC F77 CC
-	fi
-
-	fortran-2_pkg_setup
-}
-
-src_prepare() {
-	epatch "${FILESDIR}"/"${REAL_P}"-libxc_dir_include.patch
-	eautoreconf
-}
-
-src_configure() {
-	local modules="${EPREFIX}/usr/$(get_libdir)/finclude"
-	local netcdff_libs="-lnetcdff"
-	filter-flags '-m*' '-O*' "-pipe"
-	local nvcflags="${CFLAGS}"
-#	_filter-var nvcflags '-m*' '-O*' "-pipe"
-	local myeconfargs=(
-		$(use_enable mpi)
-		--enable-optimised-convolution
-		--enable-pseudo
-		--enable-libbigdft
-		--enable-binaries
-		--disable-minima-hopping
-		--with-moduledir="${modules}"
-		--with-ext-linalg="$($(tc-getPKG_CONFIG) --libs-only-l lapack) \
-			$($(tc-getPKG_CONFIG) --libs-only-l blas)"
-		--with-ext-linalg-path="$($(tc-getPKG_CONFIG) --libs-only-L lapack) \
-			$($(tc-getPKG_CONFIG) --libs-only-L blas)"
-		--disable-internal-libxc
-		--with-libxc-path="/usr"
-		--with-libxc-include="${modules}"
-		$(use_enable cuda cuda-gpu)
-		$(use_with cuda cuda-path /opt/cuda)
-		$(use_with cuda nvcc-flags "${nvcflags}")
-		$(use_enable opencl)
-		$(use_with opencl ocl-path "${EPREFIX}/usr")
-		$(use_with etsf_io etsf-io)
-		$(use_with etsf_io etsf-io-path "${EPREFIX}/usr")
-		$(use_with etsf_io netcdf-path "$($(tc-getPKG_CONFIG) --libs-only-L netcdf)")
-		"$(use etsf_io && echo "--with-netcdf-libs=$($(tc-getPKG_CONFIG) --libs netcdf) ${netcdff_libs}")"
-		FCFLAGS+=" -I${modules}"
-		LD="$(tc-getLD)"
-		CPP="$(tc-getCPP)"
-		)
-	autotools-utils_src_configure
-}
-
-src_compile() {
-	#autotools-utils_src_compile() expanded
-	_check_build_dir
-	pushd "${AUTOTOOLS_BUILD_DIR}" > /dev/null
-	emake -j1
-	sed -i -e's%\$(top_builddir)/[^ ]*/lib\([^ /$-]*\)\.a%-l\1%g' bigdft.pc
-	popd > /dev/null
-
-	use doc && autotools-utils_src_compile doc
-}
-
-src_test() {
-	use test && autotools-utils_src_test
-}
-
-src_install() {
-	autotools-utils_src_install HAVE_LIBXC=1
-}
diff --git a/sci-libs/bigdft/bigdft-1.7_pre12.ebuild b/sci-libs/bigdft/bigdft-1.7_pre12.ebuild
deleted file mode 100644
index 8ff693ea1..000000000
--- a/sci-libs/bigdft/bigdft-1.7_pre12.ebuild
+++ /dev/null
@@ -1,147 +0,0 @@
-# Copyright 1999-2013 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Header: $
-
-EAPI=5
-
-PYTHON_COMPAT=( python2_5 python2_6 python2_7 )
-
-inherit autotools-utils eutils flag-o-matic fortran-2 python-any-r1 toolchain-funcs
-
-REAL_P="${P/_pre/-dev.}"
-
-DESCRIPTION="A DFT electronic structure code using a wavelet basis set"
-HOMEPAGE="http://inac.cea.fr/L_Sim/BigDFT/"
-SRC_URI="http://forge.abinit.org/fallbacks/${REAL_P}.tar.gz"
-
-LICENSE="GPL-3"
-SLOT="0"
-KEYWORDS="~amd64 ~x86 ~amd64-linux"
-IUSE="cuda doc etsf_io mpi netcdf openmp opencl test"
-
-RDEPEND="
-	=sci-libs/libxc-1*[fortran]
-	virtual/blas
-	virtual/fortran
-	virtual/lapack
-	dev-libs/libyaml
-	mpi? ( virtual/mpi )
-	cuda? ( dev-util/nvidia-cuda-sdk )
-	opencl? (
-		|| (
-			dev-util/nvidia-cuda-sdk
-			dev-util/amdstream
-			)
-		)
-	etsf_io? ( sci-libs/etsf_io )
-	netcdf? ( || (
-				sci-libs/netcdf[fortran]
-				sci-libs/netcdf-fortran
-				)
-			)"
-DEPEND="${RDEPEND}
-	virtual/pkgconfig
-	>=sys-devel/autoconf-2.59
-	doc? ( virtual/latex-base )
-	cuda? ( ${PYTHON_DEPS} )
-	opencl? ( ${PYTHON_DEPS} )
-	app-arch/tar
-	app-arch/gzip"
-
-S="${WORKDIR}/${REAL_P}"
-
-DOCS=( README INSTALL ChangeLog AUTHORS NEWS )
-
-FORTRAN_STANDARD=90
-
-pkg_setup() {
-	# fortran-2.eclass does not handle mpi wrappers
-	if use mpi; then
-		export FC="mpif90"
-		export F77="mpif77"
-		export CC="mpicc"
-	else
-		tc-export FC F77 CC
-	fi
-
-	fortran-2_pkg_setup
-	if use openmp && [[ $(tc-getCC)$ == *gcc* ]] &&	! tc-has-openmp; then
-		die "Please select an openmp capable compiler like gcc[openmp]"
-	fi
-	python-any-r1_pkg_setup
-}
-
-src_prepare() {
-	epatch \
-		"${FILESDIR}"/"${REAL_P}"-libxc_dir_include.patch \
-		"${FILESDIR}"/"${REAL_P}"-GPUlink.patch \
-		"${FILESDIR}"/"${REAL_P}"-nolib_mods.patch
-	tar -xjf "${FILESDIR}"/"${REAL_P}"-tests.tar.bz2 -C "${S}"/tests/DFT/postSCF/
-	eautoreconf
-}
-
-src_configure() {
-	local openmp=""
-	use openmp && openmp="-fopenmp"
-	local modules="${EPREFIX}/usr/$(get_libdir)/finclude"
-	local netcdff_libs="-lnetcdff"
-	filter-flags '-m*' '-O*' "-pipe"
-	local nvcflags="${CFLAGS}"
-	_filter-var nvcflags '-m*' '-O*' "-pipe"
-	local myeconfargs=(
-		$(use_enable mpi)
-		--enable-optimised-convolution
-		--enable-pseudo
-		--enable-libbigdft
-		--enable-binaries
-		--disable-minima-hopping
-		--disable-internal-libyaml
-		--enable-internal-libabinit
-		--with-moduledir="${modules}"
-		--with-ext-linalg="$($(tc-getPKG_CONFIG) --libs-only-l lapack) \
-			$($(tc-getPKG_CONFIG) --libs-only-l blas)"
-		--with-ext-linalg-path="$($(tc-getPKG_CONFIG) --libs-only-L lapack) \
-			$($(tc-getPKG_CONFIG) --libs-only-L blas)"
-		--enable-libxc
-		--disable-internal-libxc
-		--with-libxc-include="${modules}"
-		$(use_enable cuda cuda-gpu)
-		$(use_with cuda cuda-path /opt/cuda)
-		$(use_with cuda nvcc-flags "${nvcflags}")
-		$(use_enable opencl)
-		$(use_with etsf_io etsf-io)
-		"$(use etsf_io && echo "--with-netcdf-libs=$($(tc-getPKG_CONFIG) --libs netcdf) ${netcdff_libs}")"
-		FCFLAGS="${FCFLAGS} ${openmp} -I${modules}"
-		LD="$(tc-getLD)"
-		CPP="$(tc-getCPP)"
-		)
-	autotools-utils_src_configure
-}
-
-src_compile() {
-	#autotools-utils_src_compile() expanded
-	_check_build_dir
-	pushd "${AUTOTOOLS_BUILD_DIR}" > /dev/null
-	emake -j1
-	sed -i -e's%\$(top_builddir)/[^ ]*/lib\([^ /$-]*\)\.a%-l\1%g' bigdft.pc
-	popd > /dev/null
-
-	#autotools-utils_src_compile
-	use doc && autotools-utils_src_compile doc
-}
-
-src_test() {
-	if use test; then
-		#autotools-utils_src_test() expanded
-		_check_build_dir
-		pushd "${BUILD_DIR}" > /dev/null || die
-		# Run default src_test as defined in ebuild.sh
-		cd tests
-		emake -j1 check
-		popd > /dev/null
-	fi
-}
-
-src_install() {
-	autotools-utils_src_install HAVE_LIBXC=1
-}
diff --git a/sci-libs/bigdft/files/bigdft-1.6-tuto.1-GPUlibs-1.patch b/sci-libs/bigdft/files/bigdft-1.6-tuto.1-GPUlibs-1.patch
deleted file mode 100644
index 386e39dc7..000000000
--- a/sci-libs/bigdft/files/bigdft-1.6-tuto.1-GPUlibs-1.patch
+++ /dev/null
@@ -1,26 +0,0 @@
-diff -Naur orig/bigdft-1.6-tuto.1.orig/src/CUDA/Makefile.am patched/bigdft-1.6-tuto.1/src/CUDA/Makefile.am
---- bigdft-1.6-tuto.1.orig/src/CUDA/Makefile.am	2011-09-27 12:43:06.000000000 +0000
-+++ bigdft-1.6-tuto.1/src/CUDA/Makefile.am	2012-07-04 12:08:27.000000000 +0000
-@@ -43,7 +43,8 @@
- # Not used anymore, to be removed
- #INC_CUDA = -I@LIB_CUTIL_PATH@
- EXTRA_PROGRAMS = conv_check
--noinst_LIBRARIES = libGPU.a libbasef.a
-+lib_LIBRARIES = libGPU.a
-+noinst_LIBRARIES = libbasef.a
- 
- libGPU_a_SOURCES = $(SOURCES_CU_CONV1) $(SOURCES_SHARED)  $(SOURCES_CONV)
- AM_CPPFLAGS = $(INC_CUDA) -I. -I$(top_builddir) -I@CUDA_PATH@/include/ @LIBSGPU_INCLUDE@ -DCUBLAS_USE_THUNKING
-diff -Naur orig/bigdft-1.6-tuto.1.orig/src/OpenCL/Makefile.am patched/bigdft-1.6-tuto.1/src/OpenCL/Makefile.am
---- bigdft-1.6-tuto.1.orig/src/OpenCL/Makefile.am	2011-09-27 12:43:06.000000000 +0000
-+++ bigdft-1.6-tuto.1/src/OpenCL/Makefile.am	2012-07-04 12:09:02.000000000 +0000
-@@ -26,7 +26,8 @@
- 
- EXTRA_PROGRAMS = conv_check conv_check_fft bench_conv bench_conv_quick bench_zgemm stream_check
- 
--noinst_LIBRARIES = libbasef.a libbasec.a libOCL.a libStream.a
-+lib_LIBRARIES = libOCL.a
-+noinst_LIBRARIES = libbasef.a libbasec.a libStream.a
- 
- libbasef_a_SOURCES = $(mpi_source)
- libbasef_a_LIBADD = ../modules/defs.o ../modules/base.o \
diff --git a/sci-libs/bigdft/files/bigdft-1.6-tuto.1-bigdft.pc-1.patch b/sci-libs/bigdft/files/bigdft-1.6-tuto.1-bigdft.pc-1.patch
deleted file mode 100644
index 7c3380a9b..000000000
--- a/sci-libs/bigdft/files/bigdft-1.6-tuto.1-bigdft.pc-1.patch
+++ /dev/null
@@ -1,207 +0,0 @@
-diff -Naur bigdft-1.6-tuto_orig/Makefile.am bigdft-1.6-tuto/Makefile.am
---- Makefile.am	2011-10-18 07:39:52.000000000 +0000
-+++ Makefile.am	2012-03-21 10:08:44.000000000 +0000
-@@ -4,7 +4,10 @@
- 
- ACLOCAL_AMFLAGS = -I config/m4
- 
--DISTCLEANFILES = config.inc
-+DISTCLEANFILES = config.inc bigdft.pc
-+
-+pkgconfigdir = $(libdir)/pkgconfig
-+pkgconfig_DATA = bigdft.pc
- 
- if BUILD_LIBABINIT
- libABINIT_dir = libABINIT/src
-diff -Naur bigdft-1.6-tuto_orig/Makefile.in bigdft-1.6-tuto/Makefile.in
---- Makefile.in	2012-03-21 10:03:28.000000000 +0000
-+++ Makefile.in	2012-03-21 10:20:48.000000000 +0000
-@@ -33,7 +33,7 @@
- POST_UNINSTALL = :
- subdir = .
- DIST_COMMON = README $(am__configure_deps) $(srcdir)/Makefile.am \
--	$(srcdir)/Makefile.in $(srcdir)/config.h.in \
-+	$(srcdir)/Makefile.in $(srcdir)/bigdft.pc.in $(srcdir)/config.h.in \
- 	$(top_srcdir)/config/Doxyfile.in $(top_srcdir)/configure \
- 	AUTHORS COPYING ChangeLog INSTALL NEWS config/depcomp \
- 	config/install-sh config/missing
-@@ -48,7 +48,7 @@
-  configure.lineno config.status.lineno
- mkinstalldirs = $(install_sh) -d
- CONFIG_HEADER = config.h
--CONFIG_CLEAN_FILES = config/Doxyfile
-+CONFIG_CLEAN_FILES = bigdft.pc config/Doxyfile
- CONFIG_CLEAN_VPATH_FILES =
- SOURCES =
- DIST_SOURCES =
-@@ -59,6 +59,35 @@
- 	install-pdf-recursive install-ps-recursive install-recursive \
- 	installcheck-recursive installdirs-recursive pdf-recursive \
- 	ps-recursive uninstall-recursive
-+am__vpath_adj_setup = srcdirstrip=`echo "$(srcdir)" | sed 's|.|.|g'`;
-+am__vpath_adj = case $$p in \
-+    $(srcdir)/*) f=`echo "$$p" | sed "s|^$$srcdirstrip/||"`;; \
-+    *) f=$$p;; \
-+  esac;
-+am__strip_dir = f=`echo $$p | sed -e 's|^.*/||'`;
-+am__install_max = 40
-+am__nobase_strip_setup = \
-+  srcdirstrip=`echo "$(srcdir)" | sed 's/[].[^$$\\*|]/\\\\&/g'`
-+am__nobase_strip = \
-+  for p in $$list; do echo "$$p"; done | sed -e "s|$$srcdirstrip/||"
-+am__nobase_list = $(am__nobase_strip_setup); \
-+  for p in $$list; do echo "$$p $$p"; done | \
-+  sed "s| $$srcdirstrip/| |;"' / .*\//!s/ .*/ ./; s,\( .*\)/[^/]*$$,\1,' | \
-+  $(AWK) 'BEGIN { files["."] = "" } { files[$$2] = files[$$2] " " $$1; \
-+    if (++n[$$2] == $(am__install_max)) \
-+      { print $$2, files[$$2]; n[$$2] = 0; files[$$2] = "" } } \
-+    END { for (dir in files) print dir, files[dir] }'
-+am__base_list = \
-+  sed '$$!N;$$!N;$$!N;$$!N;$$!N;$$!N;$$!N;s/\n/ /g' | \
-+  sed '$$!N;$$!N;$$!N;$$!N;s/\n/ /g'
-+am__uninstall_files_from_dir = { \
-+  test -z "$$files" \
-+    || { test ! -d "$$dir" && test ! -f "$$dir" && test ! -r "$$dir"; } \
-+    || { echo " ( cd '$$dir' && rm -f" $$files ")"; \
-+         $(am__cd) "$$dir" && rm -f $$files; }; \
-+  }
-+am__installdirs = "$(DESTDIR)$(pkgconfigdir)"
-+DATA = $(pkgconfig_DATA)
- RECURSIVE_CLEAN_TARGETS = mostlyclean-recursive clean-recursive	\
-   distclean-recursive maintainer-clean-recursive
- AM_RECURSIVE_TARGETS = $(RECURSIVE_TARGETS:-recursive=) \
-@@ -232,7 +261,9 @@
- 	config/m4
- 
- ACLOCAL_AMFLAGS = -I config/m4
--DISTCLEANFILES = config.inc
-+DISTCLEANFILES = config.inc bigdft.pc
-+pkgconfigdir = $(libdir)/pkgconfig
-+pkgconfig_DATA = bigdft.pc
- @BUILD_LIBABINIT_FALSE@libABINIT_dir = 
- @BUILD_LIBABINIT_TRUE@libABINIT_dir = libABINIT/src
- @BUILD_LIBXC_FALSE@libXC_dir = 
-@@ -307,8 +338,28 @@
- 
- distclean-hdr:
- 	-rm -f config.h stamp-h1
-+bigdft.pc: $(top_builddir)/config.status $(srcdir)/bigdft.pc.in
-+	cd $(top_builddir) && $(SHELL) ./config.status $@
- config/Doxyfile: $(top_builddir)/config.status $(top_srcdir)/config/Doxyfile.in
- 	cd $(top_builddir) && $(SHELL) ./config.status $@
-+install-pkgconfigDATA: $(pkgconfig_DATA)
-+	@$(NORMAL_INSTALL)
-+	test -z "$(pkgconfigdir)" || $(MKDIR_P) "$(DESTDIR)$(pkgconfigdir)"
-+	@list='$(pkgconfig_DATA)'; test -n "$(pkgconfigdir)" || list=; \
-+	for p in $$list; do \
-+	  if test -f "$$p"; then d=; else d="$(srcdir)/"; fi; \
-+	  echo "$$d$$p"; \
-+	done | $(am__base_list) | \
-+	while read files; do \
-+	  echo " $(INSTALL_DATA) $$files '$(DESTDIR)$(pkgconfigdir)'"; \
-+	  $(INSTALL_DATA) $$files "$(DESTDIR)$(pkgconfigdir)" || exit $$?; \
-+	done
-+
-+uninstall-pkgconfigDATA:
-+	@$(NORMAL_UNINSTALL)
-+	@list='$(pkgconfig_DATA)'; test -n "$(pkgconfigdir)" || list=; \
-+	files=`for p in $$list; do echo $$p; done | sed -e 's|^.*/||'`; \
-+	dir='$(DESTDIR)$(pkgconfigdir)'; $(am__uninstall_files_from_dir)
- 
- # This directory's subdirectories are mostly independent; you can cd
- # into them and run `make' without going through this Makefile.
-@@ -622,9 +673,12 @@
- 	       exit 1; } >&2
- check-am: all-am
- check: check-recursive
--all-am: Makefile config.h
-+all-am: Makefile $(DATA) config.h
- installdirs: installdirs-recursive
- installdirs-am:
-+	for dir in "$(DESTDIR)$(pkgconfigdir)"; do \
-+	  test -z "$$dir" || $(MKDIR_P) "$$dir"; \
-+	done
- install: install-recursive
- install-exec: install-exec-recursive
- install-data: install-data-recursive
-@@ -672,7 +726,7 @@
- 
- info-am:
- 
--install-data-am:
-+install-data-am: install-pkgconfigDATA
- 
- install-dvi: install-dvi-recursive
- 
-@@ -718,7 +772,7 @@
- 
- ps-am:
- 
--uninstall-am:
-+uninstall-am: uninstall-pkgconfigDATA
- 
- .MAKE: $(RECURSIVE_CLEAN_TARGETS) $(RECURSIVE_TARGETS) all \
- 	ctags-recursive install-am install-strip tags-recursive
-@@ -733,10 +787,10 @@
- 	install-data-am install-dvi install-dvi-am install-exec \
- 	install-exec-am install-html install-html-am install-info \
- 	install-info-am install-man install-pdf install-pdf-am \
--	install-ps install-ps-am install-strip installcheck \
-+	install-pkgconfigDATA install-ps install-ps-am install-strip installcheck \
- 	installcheck-am installdirs installdirs-am maintainer-clean \
- 	maintainer-clean-generic mostlyclean mostlyclean-generic pdf \
--	pdf-am ps ps-am tags tags-recursive uninstall uninstall-am
-+	pdf-am ps ps-am tags tags-recursive uninstall uninstall-am uninstall-pkgconfigDATA
- 
- 	configure
- 
-diff -Naur bigdft-1.6-tuto_orig/bigdft.pc.in bigdft-1.6-tuto/bigdft.pc.in
---- bigdft.pc.in	1970-01-01 00:00:00.000000000 +0000
-+++ bigdft.pc.in	2012-02-01 09:43:59.000000000 +0000
-@@ -0,0 +1,15 @@
-+@USE_CUDA_GPU_FALSE@libs_cuda=
-+@USE_CUDA_GPU_TRUE@libs_cuda=$(top_builddir)/src/CUDA/libGPU.a
-+@USE_OCL_FALSE@libs_ocl=
-+@USE_OCL_TRUE@libs_ocl=$(top_builddir)/src/OpenCL/libOCL.a -lstdc++
-+prefix=@prefix@
-+exec_prefix=@exec_prefix@
-+libdir=@libdir@
-+includedir=@includedir@
-+
-+Name: libbigdft
-+Description: Library for DFT calculation over wavelets.
-+Requires: 
-+Version: @VERSION@
-+Libs: -L${libdir} -lbigdft -lpoissonsolver ${libs_cuda} ${libs_ocl} @LIBS@ @FCLIBS@
-+Cflags: -I${includedir}
-diff -Naur bigdft-1.6-tuto_orig/configure bigdft-1.6-tuto/configure
---- configure	2012-03-21 10:03:26.000000000 +0000
-+++ configure	2012-03-21 11:04:52.000000000 +0000
-@@ -8512,7 +8512,7 @@
- docdir="${docdir}"
- 
- 
--ac_config_files="$ac_config_files Makefile libABINIT/src/Makefile config/Doxyfile src/Makefile src/modules/Makefile src/modules/configure.inc src/profiling/Makefile src/PSolver/Makefile src/convolutions/Makefile src/CUDA/Makefile src/OpenCL/Makefile src/dgemmsy/Makefile src/convolutions-c/Makefile src/art/Makefile src/tools/Makefile src/tools/bader/Makefile utils/Makefile utils/PSPfiles/Makefile pseudo/Makefile pseudo/src/Makefile pseudo/tests/Makefile doc/Makefile tests/Makefile tests/fft/Makefile tests/PSolver/Makefile tests/H2-freq/Makefile tests/MINHOP/Makefile tests/NEB/Makefile tests/NEB/input tests/NEB/NEB_include.sh tests/XabsCheb/Makefile tests/SPLSAD/Makefile tests/TDDFT/Makefile tests/OP2P/Makefile tests/DFT/Makefile tests/OpenCL/Makefile tests/CUDA/Makefile tests/ETSF_IO/Makefile tests/tutorials/Makefile tests/xc/Makefile"
-+ac_config_files="$ac_config_files Makefile bigdft.pc libABINIT/src/Makefile config/Doxyfile src/Makefile src/modules/Makefile src/modules/configure.inc src/profiling/Makefile src/PSolver/Makefile src/convolutions/Makefile src/CUDA/Makefile src/OpenCL/Makefile src/dgemmsy/Makefile src/convolutions-c/Makefile src/art/Makefile src/tools/Makefile src/tools/bader/Makefile utils/Makefile utils/PSPfiles/Makefile pseudo/Makefile pseudo/src/Makefile pseudo/tests/Makefile doc/Makefile tests/Makefile tests/fft/Makefile tests/PSolver/Makefile tests/H2-freq/Makefile tests/MINHOP/Makefile tests/NEB/Makefile tests/NEB/input tests/NEB/NEB_include.sh tests/XabsCheb/Makefile tests/SPLSAD/Makefile tests/TDDFT/Makefile tests/OP2P/Makefile tests/DFT/Makefile tests/OpenCL/Makefile tests/CUDA/Makefile tests/ETSF_IO/Makefile tests/tutorials/Makefile tests/xc/Makefile"
- 
- 
- # Call libXC ./configure script recursively.
-@@ -9349,6 +9349,7 @@
-     "config.h") CONFIG_HEADERS="$CONFIG_HEADERS config.h" ;;
-     "depfiles") CONFIG_COMMANDS="$CONFIG_COMMANDS depfiles" ;;
-     "Makefile") CONFIG_FILES="$CONFIG_FILES Makefile" ;;
-+    "bigdft.pc") CONFIG_FILES="$CONFIG_FILES bigdft.pc" ;;
-     "libABINIT/src/Makefile") CONFIG_FILES="$CONFIG_FILES libABINIT/src/Makefile" ;;
-     "config/Doxyfile") CONFIG_FILES="$CONFIG_FILES config/Doxyfile" ;;
-     "src/Makefile") CONFIG_FILES="$CONFIG_FILES src/Makefile" ;;
-diff -Naur bigdft-1.6-tuto_orig/configure.ac bigdft-1.6-tuto/configure.ac
---- configure.ac	2012-03-21 10:03:02.000000000 +0000
-+++ configure.ac	2012-03-21 10:48:53.000000000 +0000
-@@ -715,6 +715,7 @@
- dnl Give the name of file.in to transform to file
- AC_CONFIG_FILES([
- Makefile
-+bigdft.pc
- libABINIT/src/Makefile
- config/Doxyfile
- src/Makefile
diff --git a/sci-libs/bigdft/files/bigdft-1.6-tuto.1-gcc-4.6.patch b/sci-libs/bigdft/files/bigdft-1.6-tuto.1-gcc-4.6.patch
deleted file mode 100644
index e89da2546..000000000
--- a/sci-libs/bigdft/files/bigdft-1.6-tuto.1-gcc-4.6.patch
+++ /dev/null
@@ -1,67 +0,0 @@
-diff -Naurp bigdft-1.6-tuto.1.orig/src/art/art_lanczos.f90 bigdft-1.6-tuto.1/src/art/art_lanczos.f90
---- bigdft-1.6-tuto.1.orig/src/art/art_lanczos.f90	2011-10-17 08:46:50.000000000 +0000
-+++ bigdft-1.6-tuto.1/src/art/art_lanczos.f90	2012-06-22 13:03:49.000000000 +0000
-@@ -80,11 +80,30 @@ subroutine lanczos( maxvec, new_projecti
-   integer                                  :: i_min
-   real(kind=8)                             :: e_min
-   !_______________________
-+
-+  interface
-+    !> ART center
-+    !! @author
-+    !! Written by EM 2010, see ~/AUTHORS 
-+    !! It places the center of mass of a 3D vector at (0,0,0). 
-+    subroutine center( vector, vecsize )
-+
-+      use defs, only : natoms, constr
-+      use bigdft_forces, only : in_system
-+      implicit none
-+
-+      !Arguments
-+      integer, intent(in) :: vecsize
-+      real(kind=8), dimension(vecsize), intent(inout), target :: vector
-+
-+    end subroutine center
-+  end interface
-+
-   newpos = 0.0d0
-   diag = 0.0d0
-   offdiag = 0.0d0
-   lanc = 0.0d0
--  
-+
-   boxl = box * scala
-                                       ! We now take the current position as the 
-                                       ! reference point and will make  a displacement
-diff -Naurp bigdft-1.6-tuto.1.orig/src/art/calcfo_sw.f90 bigdft-1.6-tuto.1/src/art/calcfo_sw.f90
---- bigdft-1.6-tuto.1.orig/src/art/calcfo_sw.f90	2011-10-17 08:46:50.000000000 +0000
-+++ bigdft-1.6-tuto.1/src/art/calcfo_sw.f90	2012-06-22 12:58:35.000000000 +0000
-@@ -475,6 +475,28 @@ function diff_square_force_one(P,numnei,
-   integer ::  trash_evalf
-   real(8), dimension(3*natoms,configs_to_fit) :: force_tempo,tmp_force
- 
-+interface
-+! subroutine to compute forces of one atom
-+subroutine SWcalczone(nat,posa,boxl,tmp_force, this_atom,numnei,nei)
-+
-+
-+  use SWpotential
-+  use defs, only : boundary,maxnei,iproc,MPI_COMM_WORLD
-+  
-+  implicit none
-+  
-+  integer, intent(in)                               :: nat
-+  real(kind=8), intent(in), dimension(3*nat) :: posa
-+  real(kind=8), dimension(3), intent(inout)          :: boxl
-+  integer, intent(in) :: this_atom
-+  real(8), intent(out), dimension(3*nat), target:: tmp_force
-+
-+
-+  integer, dimension(nat),intent(in) :: numnei 
-+  integer, dimension(nat,maxnei),intent(in) :: nei 
-+end subroutine SWcalczone
-+end interface
-+
-   trash_evalf = 0
-   my_counter = 0
-   force_tempo = force_work_fit
diff --git a/sci-libs/bigdft/files/bigdft-1.6-tuto.1-libxc_dir_include.patch b/sci-libs/bigdft/files/bigdft-1.6-tuto.1-libxc_dir_include.patch
deleted file mode 100644
index 6d0f6046a..000000000
--- a/sci-libs/bigdft/files/bigdft-1.6-tuto.1-libxc_dir_include.patch
+++ /dev/null
@@ -1,50 +0,0 @@
---- configure.ac.orig	2011-11-23 14:02:15.000000000 +0000
-+++ configure.ac	2011-11-23 14:09:19.000000000 +0000
-@@ -551,14 +551,17 @@
- ac_build_libxc="no"
- AC_ARG_ENABLE(libxc, AS_HELP_STRING([--disable-libxc], [Do not link with libXC library (default = yes).]), ac_use_libxc=$enableval, ac_use_libxc="yes")
- AC_ARG_ENABLE(internal-libxc, AS_HELP_STRING([--disable-internal-libxc], [Do not build and link with internal libXC library (default = yes).]), ac_internal_libxc=$enableval, ac_internal_libxc="yes")
--AC_ARG_WITH(libxc-path, AS_HELP_STRING([--with-libxc-path], [Give the path for an external libXC library, lib and module files (default = None).]),
-+AC_ARG_WITH(libxc-path, AS_HELP_STRING([--with-libxc-path], [Give the path for an external libXC library, lib files (default = None).]),
-             ac_libxc_dir=$withval, ac_libxc_dir=)
-+AC_ARG_WITH(libxc-include, AS_HELP_STRING([--with-libxc-include], [Give the path for an external libXC library module files (default = None).]),
-+            ac_libxc_dir_include=$withval, ac_libxc_dir_include=)
- if test x"$ac_use_libxc" = x"yes" ; then
-   ac_build_libxc=$ac_internal_libxc
-   if test "$ac_internal_libxc" = "yes" ; then
-     ac_build_libxc="yes"
-     ac_use_libxc="yes"
-     ac_libxc_dir="$top_builddir"/libxc-1.1.0/src
-+    ac_libxc_dir_include="$ac_libxc_dir"/include
-     AC_SUBST(LIBXC_DIR, "\$(top_builddir)"/libxc-1.1.0/src)
-     AC_SUBST(LIBXC_INCLUDE, "-I\$(top_builddir)"/libxc-1.1.0/src)
-     LDFLAGS="$LDFLAGS -L\$(top_builddir)/libxc-1.1.0/src/.libs"
-@@ -566,6 +569,9 @@
-   else
-     if test -n "$ac_libxc_dir" ; then
-       LDFLAGS="$LDFLAGS -L$ac_libxc_dir/lib"
-+      if test x"$ac_libxc_dir_include" = x ; then
-+        ac_libxc_dir_include="$ac_libxc_dir"/include
-+      fi
-       
-       dnl Test the given implementation of libXC.
-       ac_libxc_libname="xc"
-@@ -574,13 +580,13 @@
-         ac_libxc_libname="dft_xc"
-         AC_CHECK_LIB($ac_libxc_libname, xc_f90_lda_vxc, withlibxc=yes, withlibxc=no)
-       fi
--      AC_CHECK_FILE($ac_libxc_dir/include/libxc_funcs_m.$capitalize_module_ext, funcs="yes", funcs="no")
--      AC_CHECK_FILE($ac_libxc_dir/include/xc_f90_lib_m.$capitalize_module_ext, lib="yes", lib="no")
--      AC_CHECK_FILE($ac_libxc_dir/include/xc_f90_types_m.$capitalize_module_ext, types="yes", types="no")
-+      AC_CHECK_FILE($ac_libxc_dir_include/libxc_funcs_m.$capitalize_module_ext, funcs="yes", funcs="no")
-+      AC_CHECK_FILE($ac_libxc_dir_include/xc_f90_lib_m.$capitalize_module_ext, lib="yes", lib="no")
-+      AC_CHECK_FILE($ac_libxc_dir_include/xc_f90_types_m.$capitalize_module_ext, types="yes", types="no")
-       if test "$withlibxc" = "yes" -a "$funcs" = "yes" -a "$lib" = "yes" -a "$types" = "yes"; then
-         ac_use_libxc="yes"
--        AC_SUBST(LIBXC_DIR, $ac_libxc_dir/include)
--        AC_SUBST(LIBXC_INCLUDE, "-I"$ac_libxc_dir/include)
-+        AC_SUBST(LIBXC_DIR, $ac_libxc_dir_include)
-+        AC_SUBST(LIBXC_INCLUDE, "-I"$ac_libxc_dir_include)
-         LIBXC_LIBS="-l"$ac_libxc_libname
-       fi
-     else
diff --git a/sci-libs/bigdft/files/bigdft-1.6.0-libxc_dir_include.patch b/sci-libs/bigdft/files/bigdft-1.6.0-libxc_dir_include.patch
deleted file mode 100644
index 7179fcb0f..000000000
--- a/sci-libs/bigdft/files/bigdft-1.6.0-libxc_dir_include.patch
+++ /dev/null
@@ -1,50 +0,0 @@
---- configure.ac.orig	2011-11-23 14:02:15.000000000 +0000
-+++ configure.ac	2011-11-23 14:09:19.000000000 +0000
-@@ -604,14 +604,17 @@
- ac_build_libxc="no"
- AC_ARG_WITH(libxc, AS_HELP_STRING([--without-libxc], [Do not link with libXC library (default = yes).]), ac_use_libxc=$enableval, ac_use_libxc="yes")
- AC_ARG_ENABLE(internal-libxc, AS_HELP_STRING([--disable-internal-libxc], [Do not build and link with internal libXC library (default = yes).]), ac_internal_libxc=$enableval, ac_internal_libxc="yes")
--AC_ARG_WITH(libxc-path, AS_HELP_STRING([--with-libxc-path], [Give the path for an external libXC library, lib and module files (default = None).]),
-+AC_ARG_WITH(libxc-path, AS_HELP_STRING([--with-libxc-path], [Give the path for an external libXC library, lib files (default = None).]),
-             ac_libxc_dir=$withval, ac_libxc_dir=)
-+AC_ARG_WITH(libxc-include, AS_HELP_STRING([--with-libxc-include], [Give the path for an external libXC library module files (default = None).]),
-+            ac_libxc_dir_include=$withval, ac_libxc_dir_include=)
- if test x"$ac_use_libxc" = x"yes" ; then
-   ac_build_libxc=$ac_internal_libxc
-   if test "$ac_internal_libxc" = "yes" ; then
-     ac_build_libxc="yes"
-     ac_use_libxc="yes"
-     ac_libxc_dir="$top_builddir"/libxc-1.1.0/src
-+    ac_libxc_dir_include="$ac_libxc_dir"/include
-     AC_SUBST(LIBXC_DIR, "\$(top_builddir)"/libxc-1.1.0/src)
-     AC_SUBST(LIBXC_INCLUDE, "-I\$(top_builddir)"/libxc-1.1.0/src)
-     LDFLAGS="$LDFLAGS -L\$(top_builddir)/libxc-1.1.0/src/.libs"
-@@ -619,6 +622,9 @@
-   else
-     if test -n "$ac_libxc_dir" ; then
-       LDFLAGS="$LDFLAGS -L$ac_libxc_dir/lib"
-+      if test x"$ac_libxc_dir_include" = x ; then
-+        ac_libxc_dir_include="$ac_libxc_dir"/include
-+      fi
-       
-       dnl Test the given implementation of libXC.
-       ac_libxc_libname="xc"
-@@ -587,13 +593,13 @@
-         ac_libxc_libname="dft_xc"
-         AC_CHECK_LIB($ac_libxc_libname, xc_f90_lda_vxc, withlibxc=yes, withlibxc=no)
-       fi
--      AC_CHECK_FILE($ac_libxc_dir/include/libxc_funcs_m.$ax_fc_mod_ext, funcs="yes", funcs="no")
--      AC_CHECK_FILE($ac_libxc_dir/include/xc_f90_lib_m.$ax_fc_mod_ext, lib="yes", lib="no")
--      AC_CHECK_FILE($ac_libxc_dir/include/xc_f90_types_m.$ax_fc_mod_ext, types="yes", types="no")
-+      AC_CHECK_FILE($ac_libxc_dir_include/libxc_funcs_m.$ax_fc_mod_ext, funcs="yes", funcs="no")
-+      AC_CHECK_FILE($ac_libxc_dir_include/xc_f90_lib_m.$ax_fc_mod_ext, lib="yes", lib="no")
-+      AC_CHECK_FILE($ac_libxc_dir_include/xc_f90_types_m.$ax_fc_mod_ext, types="yes", types="no")
-       if test "$withlibxc" = "yes" -a "$funcs" = "yes" -a "$lib" = "yes" -a "$types" = "yes"; then
-         ac_use_libxc="yes"
--        AC_SUBST(LIBXC_DIR, $ac_libxc_dir/include)
--        AC_SUBST(LIBXC_INCLUDE, "-I"$ac_libxc_dir/include)
-+        AC_SUBST(LIBXC_DIR, $ac_libxc_dir_include)
-+        AC_SUBST(LIBXC_INCLUDE, "-I"$ac_libxc_dir_include)
-         LIBXC_LIBS="-l"$ac_libxc_libname
-       fi
-     else
diff --git a/sci-libs/bigdft/files/bigdft-1.7-dev.12-GPUlink.patch b/sci-libs/bigdft/files/bigdft-1.7-dev.12-GPUlink.patch
deleted file mode 100644
index f4b0e18a9..000000000
--- a/sci-libs/bigdft/files/bigdft-1.7-dev.12-GPUlink.patch
+++ /dev/null
@@ -1,12 +0,0 @@
-diff -Naurp bigdft-1.7-dev.12.orig/S_GPU/src/Makefile.in bigdft-1.7-dev.12/S_GPU/src/Makefile.in
---- bigdft-1.7-dev.12.orig/S_GPU/src/Makefile.in	2012-07-16 08:24:00.000000000 +0000
-+++ bigdft-1.7-dev.12/S_GPU/src/Makefile.in	2013-02-19 15:59:06.142835878 +0000
-@@ -88,7 +88,7 @@ am__objects_1 = libs_gpu_la-s_gpu_C.lo \
- 	libs_gpu_la-s_gpu_F.lo
- am_libs_gpu_la_OBJECTS = $(am__objects_1)
- libs_gpu_la_OBJECTS = $(am_libs_gpu_la_OBJECTS)
--libs_gpu_la_LINK = $(LIBTOOL) --tag=CXX $(libs_gpu_la_LIBTOOLFLAGS) \
-+libs_gpu_la_LINK = $(LIBTOOL) --tag=CXX $(AM_LIBTOOLFLAGS) \
- 	$(LIBTOOLFLAGS) --mode=link $(CXXLD) $(AM_CXXFLAGS) \
- 	$(CXXFLAGS) $(libs_gpu_la_LDFLAGS) $(LDFLAGS) -o $@
- DEFAULT_INCLUDES = -I.@am__isrc@ -I$(top_builddir)
diff --git a/sci-libs/bigdft/files/bigdft-1.7-dev.12-libxc_dir_include.patch b/sci-libs/bigdft/files/bigdft-1.7-dev.12-libxc_dir_include.patch
deleted file mode 100644
index 9084d08e5..000000000
--- a/sci-libs/bigdft/files/bigdft-1.7-dev.12-libxc_dir_include.patch
+++ /dev/null
@@ -1,50 +0,0 @@
---- configure.ac.orig	2011-11-23 14:02:15.000000000 +0000
-+++ configure.ac	2011-11-23 14:09:19.000000000 +0000
-@@ -743,14 +743,17 @@
- ac_build_libxc="no"
- AC_ARG_ENABLE(libxc, AS_HELP_STRING([--without-libxc], [Do not link with libXC library (default = yes).]), ac_use_libxc=$enableval, ac_use_libxc="yes")
- AC_ARG_ENABLE(internal-libxc, AS_HELP_STRING([--disable-internal-libxc], [Do not build and link with internal libXC library (default = yes).]), ac_internal_libxc=$enableval, ac_internal_libxc="yes")
--AC_ARG_WITH(libxc-path, AS_HELP_STRING([--with-libxc-path], [Give the path for an external libXC library, lib and module files (default = None).]),
-+AC_ARG_WITH(libxc-path, AS_HELP_STRING([--with-libxc-path], [Give the path for an external libXC library, lib files (default = None).]),
-             ac_libxc_dir=$withval, ac_libxc_dir=)
-+AC_ARG_WITH(libxc-include, AS_HELP_STRING([--with-libxc-include], [Give the path for an external libXC library module files (default = None).]),
-+            ac_libxc_dir_include=$withval, ac_libxc_dir_include=)
- if test x"$ac_use_libxc" = x"yes" ; then
-   ac_build_libxc=$ac_internal_libxc
-   if test "$ac_internal_libxc" = "yes" ; then
-     ac_build_libxc="yes"
-     ac_use_libxc="yes"
-     ac_libxc_dir="$top_builddir"/libxc-1.1.0/src
-+    ac_libxc_dir_include="$ac_libxc_dir"/include
-     AC_SUBST(LIBXC_DIR, "\$(top_builddir)"/libxc-1.1.0/src)
-     AC_SUBST(LIBXC_INCLUDE, "-I\$(top_builddir)"/libxc-1.1.0/src)
-     LDFLAGS="$LDFLAGS -L\$(top_builddir)/libxc-1.1.0/src/.libs"
-@@ -758,6 +761,9 @@
-   else
-     if test -n "$ac_libxc_dir" ; then
-       LDFLAGS="$LDFLAGS -L$ac_libxc_dir/lib"
-+      if test x"$ac_libxc_dir_include" = x ; then
-+        ac_libxc_dir_include="$ac_libxc_dir"/include
-+      fi
-       
-       dnl Test the given implementation of libXC.
-       ac_libxc_libname="xc"
-@@ -766,13 +772,13 @@
-         ac_libxc_libname="dft_xc"
-         AC_CHECK_LIB($ac_libxc_libname, xc_f90_lda_vxc, withlibxc=yes, withlibxc=no)
-       fi
--      AC_CHECK_FILE($ac_libxc_dir/include/libxc_funcs_m.$ax_fc_mod_ext, funcs="yes", funcs="no")
--      AC_CHECK_FILE($ac_libxc_dir/include/xc_f90_lib_m.$ax_fc_mod_ext, lib="yes", lib="no")
--      AC_CHECK_FILE($ac_libxc_dir/include/xc_f90_types_m.$ax_fc_mod_ext, types="yes", types="no")
-+      AC_CHECK_FILE($ac_libxc_dir_include/libxc_funcs_m.$ax_fc_mod_ext, funcs="yes", funcs="no")
-+      AC_CHECK_FILE($ac_libxc_dir_include/xc_f90_lib_m.$ax_fc_mod_ext, lib="yes", lib="no")
-+      AC_CHECK_FILE($ac_libxc_dir_include/xc_f90_types_m.$ax_fc_mod_ext, types="yes", types="no")
-       if test "$withlibxc" = "yes" -a "$funcs" = "yes" -a "$lib" = "yes" -a "$types" = "yes"; then
-         ac_use_libxc="yes"
--        AC_SUBST(LIBXC_DIR, $ac_libxc_dir/include)
--        AC_SUBST(LIBXC_INCLUDE, "-I"$ac_libxc_dir/include)
-+        AC_SUBST(LIBXC_DIR, $ac_libxc_dir_include)
-+        AC_SUBST(LIBXC_INCLUDE, "-I"$ac_libxc_dir_include)
-         LIBXC_LIBS="-l"$ac_libxc_libname
-       fi
-     else
diff --git a/sci-libs/bigdft/files/bigdft-1.7-dev.12-nolib_mods.patch b/sci-libs/bigdft/files/bigdft-1.7-dev.12-nolib_mods.patch
deleted file mode 100644
index 8137a48ab..000000000
--- a/sci-libs/bigdft/files/bigdft-1.7-dev.12-nolib_mods.patch
+++ /dev/null
@@ -1,25 +0,0 @@
-diff -Naurp bigdft-1.7-dev.12.orig/src/Makefile.am bigdft-1.7-dev.12/src/Makefile.am
---- bigdft-1.7-dev.12.orig/src/Makefile.am	2012-07-16 07:46:11.000000000 +0000
-+++ bigdft-1.7-dev.12/src/Makefile.am	2013-01-09 14:09:58.198905489 +0000
-@@ -45,6 +45,9 @@ EXTRA_DIST = \
- # -------------
- if BUILD_LIB_BIGDFT
- lib_bigdft = libbigdft.a libdft_common.a
-+else
-+lib_bigdft =
-+endif
- PS_SOURCES = PSolver/Build_Kernel.f90 \
- 	PSolver/xcenergy.f90 \
- 	PSolver/3Dgradient.f90 \
-@@ -53,11 +56,6 @@ PS_SOURCES = PSolver/Build_Kernel.f90 \
- 	PSolver/wofz.f90 \
- 	lib/fft/fft3d.f90
- PS_MODULES = PSolver/Poisson_Solver.f90
--else
--lib_bigdft =
--PS_SOURCES =
--PS_MODULES =
--endif
- if BUILD_BINARIES
- binaries_sources = bigdft memguess splsad NEB frequencies MDanalysis $(minima_hopping_sources) bart abscalc BigDFT2Wannier WaCo
- local_binaries = test_forces
diff --git a/sci-libs/bigdft/files/bigdft-1.7-dev.12-tests.tar.bz2 b/sci-libs/bigdft/files/bigdft-1.7-dev.12-tests.tar.bz2
deleted file mode 100644
index d74c56176..000000000
--- a/sci-libs/bigdft/files/bigdft-1.7-dev.12-tests.tar.bz2
+++ /dev/null
diff --git a/sci-libs/bigdft/metadata.xml b/sci-libs/bigdft/metadata.xml
deleted file mode 100644
index fcc220851..000000000
--- a/sci-libs/bigdft/metadata.xml
+++ /dev/null
@@ -1,10 +0,0 @@
-<?xml version="1.0" encoding="UTF-8"?>
-<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
-<pkgmetadata>
-<herd>sci</herd>
-<use>
-  <flag name="cuda">Add cuda support</flag>
-  <flag name="etsf_io">Undocumented USE</flag>
-  <flag name="opencl">Undocumented USE</flag>
-</use>
-</pkgmetadata>