sci-mathematics/scilab version bump

9 files changed, 341 insertions, 0 deletions

diff --git a/sci-mathematics/scilab/Manifest b/sci-mathematics/scilab/Manifest
index eb9bdb7e3..dc3983111 100644
--- a/sci-mathematics/scilab/Manifest
+++ b/sci-mathematics/scilab/Manifest
@@ -1,3 +1,4 @@
 DIST scilab-5.3.3-src.tar.gz 47253497 SHA256 e6edd7d241f2a09bd2dadaaafff5c152509db240220933b87305875302401335 SHA512 334ff05239efa2c9c378a86521a979aa5578f5a79324dc4f16805a995c673d5bd9656567de127939bf30409e2ba6f5904b75508046adfcfa4a5d6390f53d8ffa WHIRLPOOL 635666dbc52280fd797f01402c42429acd3e55c1bcdd9a2af584e349838e1bb935cef97f0f9f061d7b1c44f6078a0d84fb44f2c4cb17fcf9d3ba59e79c45493e
 DIST scilab-5.4.1-src.tar.gz 66112086 SHA256 f63db4de7daeb68409644b2c32888af4f0bb0ca7ede9c3857f4ccb6289ea861c SHA512 819d433f52ebce8d6cbd71d46b7313963d5c7d2de7b946ac1d0b05e2863e168bee8453dc2974f33e09c34c0130c831f17358b38ecb7387dc7c38a64b6da96978 WHIRLPOOL 1f9ad2caa8426659eedb3e17f7cc02e309e4d610393aef74d9c14c68bf8ec7c0a6398d38dabb7d7eecb9db04f6b824eddc48cf5fbdc6fbd92c9b14cba95ad801
 DIST scilab-5.5.0-src.tar.gz 68627863 SHA256 7896ef914e40f6c7ce93dd106e091c552b1822190a3986795ee8b412a53aa5c3 SHA512 b8c061fdb8ef4bd18b332c735b0b4fb91a3aaa35edbe06d69ff4e3f360feae0be9fa3982e5f968ee3f7f0c94f115d25ec34ee3416339d38cbc4a8efa19f7b367 WHIRLPOOL 4e995b43477468d70a392214d155fd173dc22fa06ca045a84d22d7d486b26ad432a2670a7e938b6256b7e91b9540c47f60b1eac1c82e11adb5bf3f72d1b0265d
+DIST scilab-5.5.1-src.tar.gz 69538169 SHA256 c056223e12f17434a17ce881d13651bdb1b79a793bde028a978ea8dc20806729 SHA512 8906e916edef2068578e55fd01d4978ce58cb3431f0b7e9574bdd7f88667bcb74f10703a0391633e2b4fcc9ba2506c385338273b48f0f802267257f07e34d974 WHIRLPOOL 5d9d8b270ba9a814957f96d4084ff87abc5343bbc63d4ca21ae07f630be91658a4f5d9ff457c24d8bd26b90fc7ac6dfae99643f67ac75c9763e67479f1f8279a
diff --git a/sci-mathematics/scilab/files/scilab-5.5.1-accessviolation.patch b/sci-mathematics/scilab/files/scilab-5.5.1-accessviolation.patch
new file mode 100644
index 000000000..a84de9a2b
--- /dev/null
+++ b/sci-mathematics/scilab/files/scilab-5.5.1-accessviolation.patch
@@ -0,0 +1,21 @@
+diff -urN scilab-5.5.0-orig/bin/scilab scilab-5.5.0/bin/scilab
+--- scilab-5.5.0-orig/bin/scilab	2014-07-12 15:24:17.105686656 -0400
++++ scilab-5.5.0/bin/scilab	2014-07-12 15:25:29.307725409 -0400
+@@ -647,17 +647,6 @@
+ GTK_MODULES=$(echo $GTK_MODULES | sed s/gnomebreakpad//g)
+ export GTK_MODULES
+ 
+-# libEGL may be partially supported by the closed-source NVIDIA driver.
+-# Until they release an EGL driver, we force the egl_glx driver.
+-# http://bugzilla.scilab.org/show_bug.cgi?id=12940
+-if test -x /usr/bin/glxinfo; then
+-    NVIDIA_GLX_VENDOR=$(/usr/bin/glxinfo |grep "NVIDIA Corporation")
+-    if test ! -z "$NVIDIA_GLX_VENDOR"; then
+-        EGL_DRIVER=egl_glx
+-        export EGL_DRIVER
+-    fi
+-fi
+-
+ if test $SCIVERBOSE -ne 0; then
+     echo "SCI : $SCI"
+     echo "SCIBIN : $SCIBIN"
diff --git a/sci-mathematics/scilab/files/scilab-5.5.1-fix-random-runtime-failure.patch b/sci-mathematics/scilab/files/scilab-5.5.1-fix-random-runtime-failure.patch
new file mode 100644
index 000000000..92ac45339
--- /dev/null
+++ b/sci-mathematics/scilab/files/scilab-5.5.1-fix-random-runtime-failure.patch
@@ -0,0 +1,12 @@
+diff -urN scilab-orig/modules/api_scilab/src/cpp/api_double.cpp scilab/modules/api_scilab/src/cpp/api_double.cpp
+--- scilab-orig/modules/api_scilab/src/cpp/api_double.cpp	2012-08-06 23:26:31.342617365 -0400
++++ scilab/modules/api_scilab/src/cpp/api_double.cpp	2012-08-06 23:27:34.838621420 -0400
+@@ -497,7 +497,7 @@
+ /*--------------------------------------------------------------------------*/
+ int createScalarDouble(void* _pvCtx, int _iVar, double _dblReal)
+ {
+-    return createCommonScalarDouble(_pvCtx, _iVar, 0, _dblReal, NULL);
++    return createCommonScalarDouble(_pvCtx, _iVar, 0, _dblReal, 0);
+ }
+ /*--------------------------------------------------------------------------*/
+ int createScalarComplexDouble(void* _pvCtx, int _iVar, double _dblReal, double _dblImg)
diff --git a/sci-mathematics/scilab/files/scilab-5.5.1-followlinks.patch b/sci-mathematics/scilab/files/scilab-5.5.1-followlinks.patch
new file mode 100644
index 000000000..fd6aa7bae
--- /dev/null
+++ b/sci-mathematics/scilab/files/scilab-5.5.1-followlinks.patch
@@ -0,0 +1,11 @@
+--- m4/java.m4.orig	2014-02-11 23:43:03.030430258 -0500
++++ m4/java.m4	2014-02-11 23:43:54.008428766 -0500
+@@ -839,7 +839,7 @@
+       for jar in "$jardir/$1.jar" "$jardir/lib$1.jar" "$jardir/lib$1-java.jar" "$jardir/$1*.jar"; do
+ 
+ # TODO check the behaviour when spaces
+-        jars_resolved=`ls $jar 2>/dev/null`
++        jars_resolved=$(realpath $(ls $jar 2>/dev/null) 2>/dev/null)
+         for jar_resolved in $jars_resolved; do # If several jars matches
+           if test -e "$jar_resolved"; then
+             export ac_java_classpath="$jar_resolved:$ac_java_classpath"
diff --git a/sci-mathematics/scilab/files/scilab-5.5.1-gluegen.patch b/sci-mathematics/scilab/files/scilab-5.5.1-gluegen.patch
new file mode 100644
index 000000000..151443926
--- /dev/null
+++ b/sci-mathematics/scilab/files/scilab-5.5.1-gluegen.patch
@@ -0,0 +1,11 @@
+--- scilab/modules/gui/src/java/org/scilab/modules/gui/SwingView.java.orig	2014-03-24 22:38:00.928934500 -0400
++++ scilab/modules/gui/src/java/org/scilab/modules/gui/SwingView.java	2014-03-24 22:37:33.947567043 -0400
+@@ -157,7 +157,7 @@
+ 
+     static {
+         try {
+-            System.loadLibrary("gluegen2-rt");
++            System.loadLibrary("gluegen-rt");
+         } catch (Exception e) {
+             System.err.println(e);
+         }
diff --git a/sci-mathematics/scilab/files/scilab-5.5.1-java-heap.patch b/sci-mathematics/scilab/files/scilab-5.5.1-java-heap.patch
new file mode 100644
index 000000000..31060d75a
--- /dev/null
+++ b/sci-mathematics/scilab/files/scilab-5.5.1-java-heap.patch
@@ -0,0 +1,11 @@
+--- etc/jvm_options.xml.orig	2014-02-12 00:05:34.323390688 -0500
++++ etc/jvm_options.xml	2014-02-12 00:05:53.977390112 -0500
+@@ -22,7 +22,7 @@
+     <!-- ENABLE Just In Time java compiler -->
+     <option value="-Djava.compiler=JIT"/>
+     <!-- Set Java Heap space to 256mb -->
+-    <option value="-Xmx256m"/>
++    <option value="-Xmx512m"/>
+     <!-- Avoid jvm to handle sigint (& other signals)  -->
+     <option value="-Xrs"/>
+     
diff --git a/sci-mathematics/scilab/files/scilab-5.5.1-missinglib.patch b/sci-mathematics/scilab/files/scilab-5.5.1-missinglib.patch
new file mode 100644
index 000000000..7f88068c5
--- /dev/null
+++ b/sci-mathematics/scilab/files/scilab-5.5.1-missinglib.patch
@@ -0,0 +1,11 @@
+diff -urN scilab-5.5.1-orig/Makefile.am scilab-5.5.1/Makefile.am
+--- scilab-5.5.1-orig/Makefile.am	2014-10-09 18:22:21.994610695 -0400
++++ scilab-5.5.1/Makefile.am	2014-10-09 18:24:28.208333575 -0400
+@@ -74,6 +74,7 @@
+ if NEED_JAVA
+ scilab_bin_LDADD += \
+ 			$(top_builddir)/modules/console/libsciconsole.la \
++			$(top_builddir)/modules/console/libsciconsole-minimal.la \
+ 			$(top_builddir)/modules/jvm/libscijvm.la \
+ 			$(top_builddir)/modules/commons/libscicommons.la
+ else
diff --git a/sci-mathematics/scilab/files/scilab-5.5.1-nogui.patch b/sci-mathematics/scilab/files/scilab-5.5.1-nogui.patch
new file mode 100644
index 000000000..60cee5a45
--- /dev/null
+++ b/sci-mathematics/scilab/files/scilab-5.5.1-nogui.patch
@@ -0,0 +1,13 @@
+--- Makefile.in.orig	2014-01-09 22:29:06.534469383 -0500
++++ Makefile.in	2014-01-09 22:29:40.368471544 -0500
+@@ -2247,8 +2247,8 @@
+ @BUILD_HELP_TRUE@	done; \
+ @BUILD_HELP_TRUE@	fi
+ # Also install scirenderer.jar
+-@EXTERNAL_SCIRENDERER_FALSE@	$(mkinstalldirs) $(DESTDIR)$(pkgdatadir)/$(PATHTOSCIRENDERER)
+-@EXTERNAL_SCIRENDERER_FALSE@	$(INSTALL_DATA) $(top_builddir)/$(PATHTOSCIRENDERER)/$(SCIRENDERERJAR) $(DESTDIR)$(pkgdatadir)/$(PATHTOSCIRENDERER)/
++@EXTERNAL_SCIRENDERER_FALSE@@NEED_JAVA_TRUE@	$(mkinstalldirs) $(DESTDIR)$(pkgdatadir)/$(PATHTOSCIRENDERER)
++@EXTERNAL_SCIRENDERER_FALSE@@NEED_JAVA_TRUE@	$(INSTALL_DATA) $(top_builddir)/$(PATHTOSCIRENDERER)/$(SCIRENDERERJAR) $(DESTDIR)$(pkgdatadir)/$(PATHTOSCIRENDERER)/
+ 
+ .PHONY: macros localization doc
+ 
diff --git a/sci-mathematics/scilab/scilab-5.5.1.ebuild b/sci-mathematics/scilab/scilab-5.5.1.ebuild
new file mode 100644
index 000000000..130689f4f
--- /dev/null
+++ b/sci-mathematics/scilab/scilab-5.5.1.ebuild
@@ -0,0 +1,250 @@
+# Copyright 1999-2014 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: $
+
+EAPI=5
+
+JAVA_PKG_OPT_USE="gui"
+VIRTUALX_REQUIRED="manual"
+
+inherit eutils autotools bash-completion-r1 check-reqs fdo-mime flag-o-matic \
+	fortran-2 java-pkg-opt-2 toolchain-funcs virtualx
+
+# Things that don't work:
+# - tests
+
+DESCRIPTION="Scientific software package for numerical computations"
+HOMEPAGE="http://www.scilab.org/"
+SRC_URI="http://www.scilab.org/download/${PV}/${P}-src.tar.gz"
+
+LICENSE="CeCILL-2.1"
+SLOT="0"
+KEYWORDS="~x86 ~amd64"
+IUSE="bash-completion debug doc emf fftw +gui +matio mpi nls openmp
+	static-libs test tk +umfpack +xcos"
+REQUIRED_USE="xcos? ( gui ) doc? ( gui )"
+
+LINGUAS="fr_FR zh_CN zh_TW ru_RU ca_ES de_DE es_ES pt_BR ja_JP it_IT uk_UA pl_PL cs_CZ"
+LINGUAS_DOC="fr_FR pt_BR ja_JP ru_RU"
+
+for l in ${LINGUAS}; do
+	IUSE="${IUSE} linguas_${l}"
+done
+
+CDEPEND="dev-libs/libpcre
+	dev-libs/libxml2:2
+	sci-libs/hdf5[mpi=]
+	>=sci-libs/arpack-3
+	sys-devel/gettext
+	sys-libs/ncurses
+	sys-libs/readline
+	virtual/lapack
+	emf? ( dev-java/freehep-graphicsio-emf )
+	fftw? ( sci-libs/fftw:3.0 )
+	gui? (
+		dev-java/avalon-framework:4.2
+		dev-java/batik:1.7
+		dev-java/commons-io:1
+		dev-java/commons-logging:0
+		>=dev-java/flexdock-1.2.4:0
+		dev-java/fop:0
+		=dev-java/gluegen-2.1.4:2.1
+		dev-java/javahelp:0
+		dev-java/jeuclid-core:0
+		dev-java/jgoodies-looks:2.6
+		>=dev-java/jlatexmath-1.0.3:1
+		>=dev-java/jlatexmath-fop-1.0.3:1
+		=dev-java/jogl-2.1.4:2.1
+		>=dev-java/jrosetta-1.0.4:0
+		dev-java/skinlf:0
+		dev-java/xmlgraphics-commons:1.5
+		virtual/opengl )
+	matio? ( >=sci-libs/matio-1.5 )
+	tk? ( dev-lang/tk )
+	umfpack? ( sci-libs/umfpack )"
+
+RDEPEND="${CDEPEND}
+	gui? ( >=virtual/jre-1.5 )"
+
+DEPEND="${CDEPEND}
+	virtual/pkgconfig
+	debug? ( dev-util/lcov )
+	gui? (
+		>=virtual/jdk-1.5
+		doc? ( app-text/docbook-xsl-stylesheets
+			   dev-java/xml-commons-external:1.4
+			   dev-java/saxon:9 )
+		xcos? ( dev-lang/ocaml
+				dev-java/jgraphx:2.5 ) )
+	test? (
+		dev-java/junit:4
+		gui? ( ${VIRTUALX_DEPEND} ) )"
+
+DOCS=( "ACKNOWLEDGEMENTS" "README_Unix" "Readme_Visual.txt" )
+
+pkg_pretend() {
+	use doc && CHECKREQS_MEMORY="512M" check-reqs_pkg_pretend
+}
+
+pkg_setup() {
+	if use openmp; then
+		if [[ $(tc-getCC) == *gcc* ]] && ! tc-has-openmp; then
+			ewarn "You are using a gcc without OpenMP capabilities"
+			die "Need an OpenMP capable compiler"
+		fi
+		FORTRAN_NEED_OPENMP=1
+	fi
+	FORTRAN_STANDARD="77 90"
+	fortran-2_pkg_setup
+	#bug 8053
+	unset F77
+	java-pkg-opt-2_pkg_setup
+
+	ALL_LINGUAS="en_US"
+	ALL_LINGUAS_DOC="en_US"
+	for l in ${LINGUAS}; do
+		use linguas_${l} && ALL_LINGUAS="${ALL_LINGUAS} ${l}"
+	done
+	for l in ${LINGUAS_DOC}; do
+		use linguas_${l} && ALL_LINGUAS_DOC="${ALL_LINGUAS_DOC} ${l}"
+	done
+	export ALL_LINGUAS ALL_LINGUAS_DOC
+}
+
+src_prepare() {
+	epatch \
+		"${FILESDIR}/${P}-followlinks.patch" \
+		"${FILESDIR}/${P}-gluegen.patch" \
+		"${FILESDIR}/${P}-fix-random-runtime-failure.patch" \
+		"${FILESDIR}/${P}-accessviolation.patch" \
+		"${FILESDIR}/${P}-nogui.patch" \
+		"${FILESDIR}/${P}-missinglib.patch"
+
+	# increases java heap to 512M when building docs (sync with cheqreqs above)
+	use doc && epatch "${FILESDIR}/${P}-java-heap.patch"
+
+	# use the LINGUAS variable that we set
+	sed -i -e "/^ALL_LINGUAS=/d" -e "/^ALL_LINGUAS_DOC=/d" -i configure.ac ||die
+
+	# make sure the DOCBOOK_ROOT variable is set
+	sed -i -e "s/xsl-stylesheets-\*/xsl-stylesheets/g" bin/scilab* || die
+
+	#add specific gentoo java directories
+	if use gui; then
+		sed -i -e "s|/usr/lib/jogl2|/usr/lib/jogl-2.1|" \
+			-e "s|/usr/lib64/jogl2|/usr/lib64/jogl-2.1|" configure.ac || die
+		sed -i -e "s|/usr/lib/gluegen2|/usr/lib/gluegen-2.1|" \
+			-e "s|/usr/lib64/gluegen2|/usr/lib64/gluegen-2.1|" \
+			-e "s|AC_CHECK_LIB(\[gluegen2-rt|AC_CHECK_LIB([gluegen-rt|" \
+			configure.ac || die
+
+		sed -i -e "s/jogl2/jogl-2.1/" -e "s/gluegen2/gluegen-2.1/" \
+			etc/librarypath.xml || die
+	fi
+
+	mkdir jar || die
+	pushd jar >/dev/null
+	if use gui; then
+		java-pkg_jar-from jlatexmath-1,flexdock,skinlf
+		java-pkg_jar-from jgoodies-looks-2.6,jrosetta
+		java-pkg_jar-from avalon-framework-4.2,jeuclid-core
+		java-pkg_jar-from xmlgraphics-commons-1.5,commons-io-1
+		java-pkg_jar-from jogl-2.1 jogl-all.jar jogl2.jar
+		java-pkg_jar-from gluegen-2.1 gluegen-rt.jar gluegen2-rt.jar
+		java-pkg_jar-from batik-1.7 batik-all.jar
+		java-pkg_jar-from fop fop.jar
+		java-pkg_jar-from javahelp jhall.jar
+		java-pkg_jar-from jlatexmath-fop-1
+		java-pkg_jar-from xml-commons-external-1.4 xml-apis-ext.jar
+		use xcos &&	java-pkg_jar-from jgraphx-2.5
+		use doc && java-pkg_jar-from saxon-9 saxon.jar saxon9he.jar
+	fi
+	if use emf; then
+		java-pkg_jar-from freehep-graphicsio-emf,freehep-graphics2d
+		java-pkg_jar-from freehep-graphicsio,freehep-io,freehep-util
+	fi
+	if use test; then
+		java-pkg_jar-from junit-4 junit.jar junit4.jar
+		java-pkg_jar-from ant-junit
+	fi
+	popd
+
+	java-pkg-opt-2_src_prepare
+	eautoconf
+}
+
+src_configure() {
+	if use gui; then
+		export JAVA_HOME="$(java-config -O)"
+	else
+		unset JAVAC
+	fi
+
+	export BLAS_LIBS="$($(tc-getPKG_CONFIG) --libs blas)"
+	export LAPACK_LIBS="$($(tc-getPKG_CONFIG) --libs lapack)"
+	export F77_LDFLAGS="${LDFLAGS}"
+
+	econf \
+		--enable-relocatable \
+		--disable-rpath \
+		--with-docbook="${EPREFIX}/usr/share/sgml/docbook/xsl-stylesheets" \
+		--disable-static-system-lib \
+		$(use_enable debug) \
+		$(use_enable debug code-coverage) \
+		$(use_enable debug debug-C) \
+		$(use_enable debug debug-CXX) \
+		$(use_enable debug debug-fortran) \
+		$(use_enable debug debug-java) \
+		$(use_enable debug debug-linker) \
+		$(use_enable doc build-help) \
+		$(use_enable nls) \
+		$(use_enable nls build-localization) \
+		$(use_enable static-libs static) \
+		$(use_enable test compilation-tests) \
+		$(use_with emf) \
+		$(use_with fftw) \
+		$(use_with gui) \
+		$(use_with gui javasci) \
+		$(use_with matio) \
+		$(use_with openmp) \
+		$(use_with tk) \
+		$(use_with umfpack) \
+		$(use_with xcos) \
+		$(use_with xcos modelica) \
+		$(use_with mpi)
+}
+
+src_compile() {
+	emake
+	use doc && emake doc
+}
+
+src_test() {
+	if use gui; then
+		Xemake check
+	else
+		emake check
+	fi
+}
+
+src_install() {
+	default
+	prune_libtool_files --all
+	rm -rf "${D}"/usr/share/scilab/modules/*/tests ||die
+	use bash-completion && newbashcomp "${FILESDIR}"/"${PN}".bash_completion "${PN}"
+	echo "SEARCH_DIRS_MASK=${EPREFIX}/usr/$(get_libdir)/scilab" \
+		> 50-"${PN}"
+	insinto /etc/revdep-rebuild && doins "50-${PN}"
+}
+
+pkg_postinst() {
+	fdo-mime_mime_database_update
+	einfo "If you are using the NVIDIA binary drivers, and run into graphics"
+	einfo "crashes, you may try to run scilab as follows:"
+	einfo "EGL_DRIVER=egl_glx scilab"
+	einfo "See upstream http://bugzilla.scilab.org/show_bug.cgi?id=12940"
+}
+
+pkg_postrm() {
+	fdo-mime_mime_database_update
+}