sci-physics/root, app-doc/root-docs: version bump to ROOT-6

This is a major version bump for ROOT-6. Please refer to package's
ChangeLog files for details. Testing is welcome.

16 files changed, 68 insertions, 485 deletions

diff --git a/sci-physics/root/files/root-5.28.00b-asneeded.patch b/sci-physics/root/files/root-5.28.00b-asneeded.patch
deleted file mode 100644
index b845247e1..000000000
--- a/sci-physics/root/files/root-5.28.00b-asneeded.patch
+++ /dev/null
@@ -1,20 +0,0 @@
---- root.orig/configure	2010-12-20 07:17:54.000000000 +0000
-+++ root/configure	2010-12-20 07:16:05.000000000 +0000
-@@ -709,7 +709,7 @@
-        cat <<EOF > conftest.mk
- include ${ac_srcdir}/config/Makefile.${arch}
- conftest: conftest.c
--	\$(CC) \$(CFLAGS) \$(LDFLAGS) $linkdir $linklib \$< -o \$@
-+	\$(CC) \$(CFLAGS) \$(LDFLAGS) \$< $linkdir $linklib  -o \$@
- 
- conftest.c:
- 	echo "int main() { return 0; }" > \$@
-@@ -723,7 +723,7 @@
-        cat <<EOF > conftest.mk
- include ${ac_srcdir}/config/Makefile.${arch}
- conftest:conftest.c
--	\$(CC) \$(CFLAGS) \$(LDFLAGS) $linkdir $linklib \$< -o \$@
-+	\$(CC) \$(CFLAGS) \$(LDFLAGS) \$< $linkdir $linklib -o \$@
- 
- conftest.c:
- 	echo "extern int $linksymbol (); " > \$@
diff --git a/sci-physics/root/files/root-5.28.00b-prop-ldflags.patch b/sci-physics/root/files/root-5.28.00b-prop-ldflags.patch
deleted file mode 100644
index 732431943..000000000
--- a/sci-physics/root/files/root-5.28.00b-prop-ldflags.patch
+++ /dev/null
@@ -1,13 +0,0 @@
-diff -Naur root.orig/config/Makefile.in root/config/Makefile.in
---- root.orig/config/Makefile.in	2010-12-14 17:20:26.000000000 +0300
-+++ root/config/Makefile.in	2010-12-17 22:33:34.902161458 +0300
-@@ -27,7 +27,7 @@
- 
- EXTRA_CFLAGS   := -Iinclude @cflags@
- EXTRA_CXXFLAGS := -Iinclude @cflags@
--EXTRA_LDFLAGS  := @ldflags@
-+EXTRA_LDFLAGS  := @ldflags@ $(LDFLAGS)
- WINRTDEBUG     := @winrtdebug@
- 
- GLBPATCHFLAGS  := @glbpatchcflags@
-
diff --git a/sci-physics/root/files/root-5.28.00b-unuran.patch b/sci-physics/root/files/root-5.28.00b-unuran.patch
deleted file mode 100644
index 76422daed..000000000
--- a/sci-physics/root/files/root-5.28.00b-unuran.patch
+++ /dev/null
@@ -1,39 +0,0 @@
-diff -ur root-trunk.orig/math/unuran/Module.mk root-trunk/math/unuran/Module.mk
---- root.orig/math/unuran/Module.mk	2010-11-25 20:41:32.000000000 +0100
-+++ root/math/unuran/Module.mk	2010-11-25 20:51:47.190704977 +0100
-@@ -20,7 +20,7 @@
- UNURANETAG   := $(call stripsrc,$(UNURANDIRS)/headers.d)
- UNRCFG       := $(call stripsrc,$(UNURANDIRS)/$(UNRVERS)/config.h)
- 
--UNRTARCONTENT:=$(subst $(UNRVERS),$(UNRDIRS),$(shell mkdir -p $(UNRDIR); cd $(UNRDIR); gunzip -c $(UNRSRCS) | tar tf -))
-+UNRTARCONTENT:=
- UNRS         := $(filter %.c, \
-                 $(filter $(UNRDIRS)/src/utils/%,$(UNRTARCONTENT)) \
-                 $(filter $(UNRDIRS)/src/methods/%,$(UNRTARCONTENT)) \
-@@ -69,10 +69,9 @@
- ##### local rules #####
- .PHONY:         all-$(MODNAME) clean-$(MODNAME) distclean-$(MODNAME)
- 
--include/%.h: 	$(UNURANDIRI)/%.h $(UNURANETAG)
-+include/%.h: 	$(UNURANDIRI)/%.h
- 		cp $< $@
- 
--$(UNURANDEP):   $(UNRCFG)
- $(UNRS):        $(UNURANETAG)
- 
- $(UNURANETAG):	$(UNRSRCS)
-@@ -125,12 +124,12 @@
- 		GNUMAKE=$(MAKE) ./configure  CC="$$ACC"  \
- 		CFLAGS="$$ACFLAGS");
- 
--$(UNURANLIB):   $(UNRCFG) $(UNRO) $(UNURANO) $(UNURANDO) $(ORDER_) \
-+$(UNURANLIB):   $(UNURANO) $(UNURANDO) $(ORDER_) \
-                 $(MAINLIBS) $(UNURANLIBDEP)
- 		@$(MAKELIB) $(PLATFORM) $(LD) "$(LDFLAGS)"  \
- 		   "$(SOFLAGS)" libUnuran.$(SOEXT) $@     \
- 		   "$(UNURANO) $(UNURANDO)"             \
--		   "$(UNURANLIBEXTRA) $(UNRO)"
-+		   "$(UNURANLIBEXTRA) -lunuran"
- 
- $(UNURANDS):    $(UNRINIT) $(UNURANDH1) $(UNURANL) $(ROOTCINTTMPDEP)
- 		$(MAKEDIR)
diff --git a/sci-physics/root/files/root-5.32.00-dotfont.patch b/sci-physics/root/files/root-5.32.00-dotfont.patch
deleted file mode 100644
index 85d6dea76..000000000
--- a/sci-physics/root/files/root-5.32.00-dotfont.patch
+++ /dev/null
@@ -1,58 +0,0 @@
---- root/html/src/TClassDocOutput.cxx.orig	2012-05-25 16:18:10.000000000 +0400
-+++ root/html/src/TClassDocOutput.cxx	2012-05-29 21:36:53.813593012 +0400
-@@ -625,7 +625,7 @@
-       << "size=\"8,10\";" << endl
-       << "ratio=auto;" << endl
-       << "margin=0;" << endl
--      << "node [shape=plaintext,fontsize=40,width=4,height=0.75];" << endl
-+      << "node [shape=plaintext,fontsize=40,width=4,height=0.75,fontname=\"DejaVu Serif\"];" << endl
-       << "\"" << fCurrentClass->GetName() << "\" [shape=ellipse];" << endl;
- 
-    std::stringstream ssDep;
-@@ -704,7 +704,7 @@
-             outdot << ";" << endl;
-          } else if (writeAndMoreFor) {
-                outdot << "  \"...andmore" << writeAndMoreFor->GetName()
--                      << "\" [label=\"...and more\",fontname=\"Times-Italic\",fillcolor=lightgrey,style=filled];" << endl;
-+                      << "\" [label=\"...and more\",fontname=\"DejaVu Serif Italic\",fillcolor=lightgrey,style=filled];" << endl;
-          }
-       }
-       if (!levelExists) break;
-@@ -733,7 +733,7 @@
-       << "ranksep=0.1;" << endl
-       << "nodesep=0;" << endl
-       << "margin=0;" << endl;
--   outdot << "  node [style=filled,width=0.7,height=0.15,fixedsize=true,shape=plaintext,fontsize=10];" << endl;
-+   outdot << "  node [style=filled,width=0.7,height=0.15,fixedsize=true,shape=plaintext,fontsize=10,fontname=\"DejaVu Serif\"];" << endl;
- 
-    std::stringstream ssDep;
-    const int numColumns = 3;
-@@ -939,7 +939,7 @@
-       << "ranksep=0;" << endl
-       << "nodesep=0;" << endl
-       << "size=\"8,10\";" << endl
--      << "node [fontsize=20,shape=plaintext];" << endl;
-+      << "node [fontsize=20,shape=plaintext,fontname=\"DejaVu Serif\"];" << endl;
- 
-    for (std::list<std::string>::iterator iFile = listFilesToParse.begin();
-       iFile != listFilesToParse.end(); ++iFile) {
-@@ -999,7 +999,8 @@
-       << "ranksep=0.7;" << endl
-       << "nodesep=0.3;" << endl
-       << "size=\"8,8\";" << endl
--      << "ratio=compress;" << endl;
-+      << "ratio=compress;" << endl
-+      << "node [fontname=\"DejaVu Serif\"];" << endl;
- 
-    TString libs(fCurrentClass->GetSharedLibs());
-    outdot << "\"All Libraries\" [URL=\"LibraryDependencies.html\",shape=box,rank=max,fillcolor=lightgray,style=filled];" << endl;
-@@ -1109,7 +1110,8 @@
- 
-    dotout << "digraph G {" << endl
-           << "ratio=auto;" << endl
--          << "rankdir=RL;" << endl;
-+          << "rankdir=RL;" << endl
-+          << "node [fontname=\"DejaVu Serif\"];" << endl;
- 
-    // loop on all classes
-    TClassDocInfo* cdi = 0;
diff --git a/sci-physics/root/files/root-5.32.00-explicit-functions.patch b/sci-physics/root/files/root-5.32.00-explicit-functions.patch
deleted file mode 100644
index 570d61e68..000000000
--- a/sci-physics/root/files/root-5.32.00-explicit-functions.patch
+++ /dev/null
@@ -1,18 +0,0 @@
---- root/io/io/Module.mk.orig	2012-02-29 19:46:38.000000000 +0400
-+++ root/io/io/Module.mk	2012-03-09 02:29:19.905665572 +0400
-@@ -67,15 +67,5 @@
- distclean::     distclean-$(MODNAME)
- 
- ##### extra rules ######
--#ifeq ($(GCC_VERS_FULL),gcc-4.4.0)
--ifeq ($(GCC_VERS),gcc-4.4)
--ifneq ($(filter -O%,$(OPT)),)
-    $(call stripsrc,$(IODIRS)/TStreamerInfoReadBuffer.o): CXXFLAGS += -DR__EXPLICIT_FUNCTION_INSTANTIATION
--endif
--endif
--ifeq ($(GCC_VERS),gcc-4.5)
--ifneq ($(filter -O%,$(OPT)),)
-    $(call stripsrc,$(IODIRS)/TStreamerInfoReadBuffer.o): CXXFLAGS += -DR__EXPLICIT_FUNCTION_INSTANTIATION
--endif
--endif
--
diff --git a/sci-physics/root/files/root-5.32.00-htmldoc.patch b/sci-physics/root/files/root-5.32.00-htmldoc.patch
deleted file mode 100644
index 3b80b39cd..000000000
--- a/sci-physics/root/files/root-5.32.00-htmldoc.patch
+++ /dev/null
@@ -1,12 +0,0 @@
---- root/html/src/THtml.cxx.orig	2012-05-25 16:18:10.000000000 +0400
-+++ root/html/src/THtml.cxx	2012-05-29 19:22:40.810563296 +0400
-@@ -1913,6 +1913,9 @@
- void THtml::CreateStyleSheet() const {
-    // Write the default ROOT style sheet.
-    CopyFileFromEtcDir("ROOT.css");
-+   CopyFileFromEtcDir("info.png");
-+   CopyFileFromEtcDir("root-banner.png");
-+   CopyFileFromEtcDir("rootdrawing-logo.png");
-    CopyFileFromEtcDir("shadowAlpha.png");
-    CopyFileFromEtcDir("shadow.gif");
- }
diff --git a/sci-physics/root/files/root-5.32.00-nobyte-compile.patch b/sci-physics/root/files/root-5.32.00-nobyte-compile.patch
deleted file mode 100644
index 179e5790c..000000000
--- a/sci-physics/root/files/root-5.32.00-nobyte-compile.patch
+++ /dev/null
@@ -1,137 +0,0 @@
-diff -Naur root.as-needed/Makefile root/Makefile
---- root.as-needed/Makefile	2011-07-10 10:42:49.758191296 +0400
-+++ root/Makefile	2011-07-10 10:43:21.493339703 +0400
-@@ -1167,10 +1167,7 @@
- 	   if test "x$(RFLX_GRFLXPY)" != "x"; then \
- 	      rm -f $(DESTDIR)$(LIBDIR)/$(RFLX_GRFLXPY); \
- 	   fi; \
--	   if test "x$(RFLX_GRFLXPYC)" != "x"; then \
--	      rm -f $(DESTDIR)$(LIBDIR)/$(RFLX_GRFLXPYC); \
--	   fi; \
--	   if test "x$(RFLX_GRFLXPY)$(RFLX_GRFLXPYC)" != "x"; then \
-+	   if test "x$(RFLX_GRFLXPY)" != "x"; then \
- 	      dir=$(RFLX_GRFLXDD:lib/=); \
- 	      while test "x$${dir}" != "x" && \
- 	         test -d $(DESTDIR)$(LIBDIR)/$${dir} && \
-diff -Naur root.as-needed/bindings/pyroot/Module.mk root/bindings/pyroot/Module.mk
---- root.as-needed/bindings/pyroot/Module.mk	2011-07-10 10:42:48.991561304 +0400
-+++ root/bindings/pyroot/Module.mk	2011-07-10 10:43:21.493339703 +0400
-@@ -48,8 +48,6 @@
- ROOTPY       := $(subst $(MODDIR),$(LPATH),$(ROOTPYS))
- $(LPATH)/%.py: $(MODDIR)/%.py; cp $< $@
- endif
--ROOTPYC      := $(ROOTPY:.py=.pyc)
--ROOTPYO      := $(ROOTPY:.py=.pyo)
- 
- # used in the main Makefile
- ALLHDRS      += $(patsubst $(MODDIRI)/%.h,include/%.h,$(PYROOTH))
-@@ -68,10 +66,8 @@
- include/%.h:    $(PYROOTDIRI)/%.h
- 		cp $< $@
- 
--%.pyc: %.py;    python -c 'import py_compile; py_compile.compile( "$<" )'
--%.pyo: %.py;    python -O -c 'import py_compile; py_compile.compile( "$<" )'
- 
--$(PYROOTLIB):   $(PYROOTO) $(PYROOTDO) $(ROOTPY) $(ROOTPYC) $(ROOTPYO) \
-+$(PYROOTLIB):   $(PYROOTO) $(PYROOTDO) $(ROOTPY) \
-                 $(ROOTLIBSDEP) $(PYTHONLIBDEP)
- 		@$(MAKELIB) $(PLATFORM) $(LD) "$(LDFLAGS)" \
- 		  "$(SOFLAGS)" libPyROOT.$(SOEXT) $@ \
-@@ -113,7 +109,7 @@
- 
- distclean-$(MODNAME): clean-$(MODNAME)
- 		@rm -f $(PYROOTDEP) $(PYROOTDS) $(PYROOTDH) $(PYROOTLIB) \
--		   $(ROOTPY) $(ROOTPYC) $(ROOTPYO) $(PYROOTMAP) \
-+		   $(ROOTPY) $(PYROOTMAP) \
- 		   $(PYROOTPYD) $(PYTHON64DEP) $(PYTHON64)
- 
- distclean::     distclean-$(MODNAME)
-diff -Naur root.as-needed/build/package/debian/rules root/build/package/debian/rules
---- root.as-needed/build/package/debian/rules	2011-07-10 10:42:49.241549346 +0400
-+++ root/build/package/debian/rules	2011-07-10 10:48:06.989670589 +0400
-@@ -691,10 +691,6 @@
- 		-X$(SYSCONFDIR)/root/system.rootauthrc			\
- 		-X$(SYSCONFDIR)/root/system.rootdaemonrc		\
- 		-X$(PREFIX)/lib/root/$(SOVERS)/libAfterImage.a		\
--		-X$(PREFIX)/lib/root/$(SOVERS)/PyCintex.pyc		\
--		-X$(PREFIX)/lib/root/$(SOVERS)/PyCintex.pyo		\
--		-X$(PREFIX)/lib/root/$(SOVERS)/ROOT.pyc			\
--		-X$(PREFIX)/lib/root/$(SOVERS)/ROOT.pyo			\
- 		-X$(PREFIX)/lib/root/$(SOVERS)/cint7			\
- 		-X$(PREFIX)/include/root/Minuit2
- #		$(foreach i, \
-diff -Naur root.as-needed/cint/cintex/Module.mk root/cint/cintex/Module.mk
---- root.as-needed/cint/cintex/Module.mk	2011-07-10 10:42:49.104889217 +0400
-+++ root/cint/cintex/Module.mk	2011-07-10 10:43:21.496672876 +0400
-@@ -31,10 +31,6 @@
- CINTEXPY     := $(subst $(MODDIR)/python,$(LPATH),$(CINTEXPYS))
- $(LPATH)/%.py: $(MODDIR)/python/%.py; cp $< $@
- endif
--ifneq ($(BUILDPYTHON),no)
--CINTEXPYC    := $(CINTEXPY:.py=.pyc)
--CINTEXPYO    := $(CINTEXPY:.py=.pyo)
--endif
- 
- # used in the main Makefile
- ALLHDRS      += $(patsubst $(MODDIRI)/Cintex/%.h,include/Cintex/%.h,$(CINTEXH))
-@@ -86,8 +82,6 @@
- 		fi)
- 		cp $< $@
- 
--%.pyc: %.py;    python -c 'import py_compile; py_compile.compile( "$<" )'
--%.pyo: %.py;    python -O -c 'import py_compile; py_compile.compile( "$<" )'
- 
- $(CINTEXLIB):   $(CINTEXO) $(CINTEXPY) $(CINTEXPYC) $(CINTEXPYO) \
-                 $(ORDER_) $(subst $(CINTEXLIB),,$(MAINLIBS)) $(CINTEXLIBDEP)
-diff -Naur root.as-needed/cint/reflex/Module.mk root/cint/reflex/Module.mk
---- root.as-needed/cint/reflex/Module.mk	2011-07-10 10:42:49.074890651 +0400
-+++ root/cint/reflex/Module.mk	2011-07-10 10:43:21.496672876 +0400
-@@ -48,9 +48,6 @@
- RFLX_GRFLXS   := $(wildcard $(RFLX_GRFLXSD)/*.py)
- RFLX_GRFLXPY  := $(patsubst $(RFLX_GRFLXSD)/%.py,$(RFLX_GRFLXDD)/%.py,$(RFLX_GRFLXS))
- RFLX_GRFLXPY  += $(RFLX_GCCXMLPATHPY)
--ifneq ($(BUILDPYTHON),no)
--RFLX_GRFLXPYC := $(subst .py,.pyc,$(RFLX_GRFLXPY))
--endif
- 
- RFLX_LIBDIR = $(LIBDIR)
- 
-@@ -92,7 +89,7 @@
- 
- ALLEXECS += $(RFLX_GENMAPX)
- 
--POSTBIN  += $(RFLX_GRFLXPYC) $(RFLX_GRFLXPY)
-+POSTBIN  += $(RFLX_GRFLXPY)
- 
- ##### local rules #####
- .PHONY:         all-$(MODNAME) clean-$(MODNAME) distclean-$(MODNAME) \
-@@ -122,8 +119,6 @@
- 		  mkdir -p lib/python/genreflex; fi )
- 		cp $< $@
- 
--$(RFLX_GRFLXDD)/%.pyc: $(RFLX_GRFLXDD)/%.py
--		@python -c 'import py_compile; py_compile.compile( "$<" )'
- 
- $(RFLX_GENMAPO) : CXXFLAGS += -I$(REFLEXDIRS)/genmap
- 
-@@ -149,7 +144,7 @@
- 		$(RLIBMAP) -o $@ -l $(REFLEXDICTLIB) \
- 		   -d $(REFLEXDICTLIBDEPM) -c $(REFLEXL)
- 
--all-$(MODNAME): $(REFLEXLIB) $(REFLEXDICTLIB) $(REFLEXDICTMAP) $(RFLX_GRFLXPYC) $(RFLX_GRFLXPY)
-+all-$(MODNAME): $(REFLEXLIB) $(REFLEXDICTLIB) $(REFLEXDICTMAP) $(RFLX_GRFLXPY)
- 
- clean-genreflex:
- 		@rm -rf lib/python/genreflex
-diff -Naur root.as-needed/cint/reflex/python/CMakeLists.txt root/cint/reflex/python/CMakeLists.txt
---- root.as-needed/cint/reflex/python/CMakeLists.txt	2011-07-10 10:42:49.074890651 +0400
-+++ root/cint/reflex/python/CMakeLists.txt	2011-07-10 10:43:21.496672876 +0400
-@@ -15,7 +15,7 @@
- #####################   sources   ####################
- 
- FILE(GLOB_RECURSE GENREFLEX_SRCS RELATIVE ${CMAKE_CURRENT_SOURCE_DIR} genreflex/*.py)
--SET(GENREFLEX_SCRIPT ${CMAKE_CURRENT_BINARY_DIR}/genreflex/genreflex.pyc PARENT_SCOPE)
-+SET(GENREFLEX_SCRIPT PARENT_SCOPE)
- 
- #####################  gccxmlpath ####################
- 
diff --git a/sci-physics/root/files/root-5.32.00-rmkdepend.patch b/sci-physics/root/files/root-5.32.00-rmkdepend.patch
deleted file mode 100644
index 6658660e1..000000000
--- a/sci-physics/root/files/root-5.32.00-rmkdepend.patch
+++ /dev/null
@@ -1,21 +0,0 @@
---- root/build/rmkdepend/main.c.orig	2012-05-09 15:00:06.000000000 +0400
-+++ root/build/rmkdepend/main.c	2013-12-22 01:58:44.939245160 +0400
-@@ -52,18 +52,6 @@
- #else
- #include <io.h>
- #endif
--#if !defined(__hpux)
--# if defined(__APPLE__)
--#  include <AvailabilityMacros.h>
--#  if !defined(MAC_OS_X_VERSION_10_4)
--extern int fchmod(int, int);
--#  endif
--# elif defined(__CYGWIN__)
--extern int fchmod(int, mode_t);
--#else
--extern int fchmod(int, int);
--# endif
--#endif
- 
- #ifdef MINIX
- #define USE_CHMOD 1
diff --git a/sci-physics/root/files/root-5.32.00-rusage.patch b/sci-physics/root/files/root-5.32.00-rusage.patch
deleted file mode 100644
index 992370c55..000000000
--- a/sci-physics/root/files/root-5.32.00-rusage.patch
+++ /dev/null
@@ -1,12 +0,0 @@
---- root/core/unix/src/TUnixSystem.cxx.orig	2012-05-09 14:59:38.000000000 +0400
-+++ root/core/unix/src/TUnixSystem.cxx	2013-12-22 02:35:01.983262490 +0400
-@@ -4882,8 +4882,8 @@
- 
- //---- System, CPU and Memory info ---------------------------------------------
- 
--#if defined(R__MACOSX)
- #include <sys/resource.h>
-+#if defined(R__MACOSX)
- #include <mach/mach.h>
- #include <mach/mach_error.h>
- 
diff --git a/sci-physics/root/files/root-5.34.05-nobyte-compile.patch b/sci-physics/root/files/root-5.34.05-nobyte-compile.patch
deleted file mode 100644
index ec67a1588..000000000
--- a/sci-physics/root/files/root-5.34.05-nobyte-compile.patch
+++ /dev/null
@@ -1,137 +0,0 @@
-diff -Naur root.as-needed/Makefile root/Makefile
---- a/Makefile.orig	2013-02-15 02:27:56.000000000 +0400
-+++ b/Makefile	2013-02-23 02:22:14.556465852 +0400
-@@ -1258,10 +1258,7 @@
- 	   for lib in $(RFLX_GRFLXPY); do \
- 	      rm -f $(DESTDIR)$(LIBDIR)/$${lib#lib/}; \
- 	   done; \
--	   for lib in $(RFLX_GRFLXPYC); do \
--	      rm -f $(DESTDIR)$(LIBDIR)/$${lib#lib/}; \
--	   done; \
--	   if test "x$(RFLX_GRFLXPY)$(RFLX_GRFLXPYC)" != "x"; then \
-+	   if test "x$(RFLX_GRFLXPY)" != "x"; then \
- 	      dir=$(subst lib/,,$(RFLX_GRFLXDD)); \
- 	      while test "x$${dir}" != "x" && \
- 	         test -d $(DESTDIR)$(LIBDIR)/$${dir} && \
-diff -Naur root.as-needed/bindings/pyroot/Module.mk root/bindings/pyroot/Module.mk
---- root.as-needed/bindings/pyroot/Module.mk	2011-07-10 10:42:48.991561304 +0400
-+++ root/bindings/pyroot/Module.mk	2011-07-10 10:43:21.493339703 +0400
-@@ -48,8 +48,6 @@
- ROOTPY       := $(subst $(MODDIR),$(LPATH),$(ROOTPYS))
- $(LPATH)/%.py: $(MODDIR)/%.py; cp $< $@
- endif
--ROOTPYC      := $(ROOTPY:.py=.pyc)
--ROOTPYO      := $(ROOTPY:.py=.pyo)
- 
- # used in the main Makefile
- ALLHDRS      += $(patsubst $(MODDIRI)/%.h,include/%.h,$(PYROOTH))
-@@ -68,10 +66,8 @@
- include/%.h:    $(PYROOTDIRI)/%.h
- 		cp $< $@
- 
--%.pyc: %.py;    python -c 'import py_compile; py_compile.compile( "$<" )'
--%.pyo: %.py;    python -O -c 'import py_compile; py_compile.compile( "$<" )'
- 
--$(PYROOTLIB):   $(PYROOTO) $(PYROOTDO) $(ROOTPY) $(ROOTPYC) $(ROOTPYO) \
-+$(PYROOTLIB):   $(PYROOTO) $(PYROOTDO) $(ROOTPY) \
-                 $(ROOTLIBSDEP) $(PYTHONLIBDEP)
- 		@$(MAKELIB) $(PLATFORM) $(LD) "$(LDFLAGS)" \
- 		  "$(SOFLAGS)" libPyROOT.$(SOEXT) $@ \
-@@ -113,7 +109,7 @@
- 
- distclean-$(MODNAME): clean-$(MODNAME)
- 		@rm -f $(PYROOTDEP) $(PYROOTDS) $(PYROOTDH) $(PYROOTLIB) \
--		   $(ROOTPY) $(ROOTPYC) $(ROOTPYO) $(PYROOTMAP) \
-+		   $(ROOTPY) $(PYROOTMAP) \
- 		   $(PYROOTPYD) $(PYTHON64DEP) $(PYTHON64)
- 
- distclean::     distclean-$(MODNAME)
-diff -Naur root.as-needed/build/package/debian/rules root/build/package/debian/rules
---- root.as-needed/build/package/debian/rules	2011-07-10 10:42:49.241549346 +0400
-+++ root/build/package/debian/rules	2011-07-10 10:48:06.989670589 +0400
-@@ -691,10 +691,6 @@
- 		-X$(SYSCONFDIR)/root/system.rootauthrc			\
- 		-X$(SYSCONFDIR)/root/system.rootdaemonrc		\
- 		-X$(PREFIX)/lib/root/$(SOVERS)/libAfterImage.a		\
--		-X$(PREFIX)/lib/root/$(SOVERS)/PyCintex.pyc		\
--		-X$(PREFIX)/lib/root/$(SOVERS)/PyCintex.pyo		\
--		-X$(PREFIX)/lib/root/$(SOVERS)/ROOT.pyc			\
--		-X$(PREFIX)/lib/root/$(SOVERS)/ROOT.pyo			\
- 		-X$(PREFIX)/lib/root/$(SOVERS)/cint7			\
- 		-X$(PREFIX)/include/root/Minuit2
- #		$(foreach i, \
-diff -Naur root.as-needed/cint/cintex/Module.mk root/cint/cintex/Module.mk
---- root.as-needed/cint/cintex/Module.mk	2011-07-10 10:42:49.104889217 +0400
-+++ root/cint/cintex/Module.mk	2011-07-10 10:43:21.496672876 +0400
-@@ -31,10 +31,6 @@
- CINTEXPY     := $(subst $(MODDIR)/python,$(LPATH),$(CINTEXPYS))
- $(LPATH)/%.py: $(MODDIR)/python/%.py; cp $< $@
- endif
--ifneq ($(BUILDPYTHON),no)
--CINTEXPYC    := $(CINTEXPY:.py=.pyc)
--CINTEXPYO    := $(CINTEXPY:.py=.pyo)
--endif
- 
- # used in the main Makefile
- ALLHDRS      += $(patsubst $(MODDIRI)/Cintex/%.h,include/Cintex/%.h,$(CINTEXH))
-@@ -86,8 +82,6 @@
- 		fi)
- 		cp $< $@
- 
--%.pyc: %.py;    python -c 'import py_compile; py_compile.compile( "$<" )'
--%.pyo: %.py;    python -O -c 'import py_compile; py_compile.compile( "$<" )'
- 
- $(CINTEXLIB):   $(CINTEXO) $(CINTEXPY) $(CINTEXPYC) $(CINTEXPYO) \
-                 $(ORDER_) $(subst $(CINTEXLIB),,$(MAINLIBS)) $(CINTEXLIBDEP)
-diff -Naur root.as-needed/cint/reflex/Module.mk root/cint/reflex/Module.mk
---- root.as-needed/cint/reflex/Module.mk	2011-07-10 10:42:49.074890651 +0400
-+++ root/cint/reflex/Module.mk	2011-07-10 10:43:21.496672876 +0400
-@@ -48,9 +48,6 @@
- RFLX_GRFLXS   := $(wildcard $(RFLX_GRFLXSD)/*.py)
- RFLX_GRFLXPY  := $(patsubst $(RFLX_GRFLXSD)/%.py,$(RFLX_GRFLXDD)/%.py,$(RFLX_GRFLXS))
- RFLX_GRFLXPY  += $(RFLX_GCCXMLPATHPY)
--ifneq ($(BUILDPYTHON),no)
--RFLX_GRFLXPYC := $(subst .py,.pyc,$(RFLX_GRFLXPY))
--endif
- 
- RFLX_LIBDIR = $(LIBDIR)
- 
-@@ -92,7 +89,7 @@
- 
- ALLEXECS += $(RFLX_GENMAPX)
- 
--POSTBIN  += $(RFLX_GRFLXPYC) $(RFLX_GRFLXPY)
-+POSTBIN  += $(RFLX_GRFLXPY)
- 
- ##### local rules #####
- .PHONY:         all-$(MODNAME) clean-$(MODNAME) distclean-$(MODNAME) \
-@@ -122,8 +119,6 @@
- 		  mkdir -p lib/python/genreflex; fi )
- 		cp $< $@
- 
--$(RFLX_GRFLXDD)/%.pyc: $(RFLX_GRFLXDD)/%.py
--		@python -c 'import py_compile; py_compile.compile( "$<" )'
- 
- $(RFLX_GENMAPO) : CXXFLAGS += -I$(REFLEXDIRS)/genmap
- 
-@@ -149,7 +144,7 @@
- 		$(RLIBMAP) -o $@ -l $(REFLEXDICTLIB) \
- 		   -d $(REFLEXDICTLIBDEPM) -c $(REFLEXL)
- 
--all-$(MODNAME): $(REFLEXLIB) $(REFLEXDICTLIB) $(REFLEXDICTMAP) $(RFLX_GRFLXPYC) $(RFLX_GRFLXPY)
-+all-$(MODNAME): $(REFLEXLIB) $(REFLEXDICTLIB) $(REFLEXDICTMAP) $(RFLX_GRFLXPY)
- 
- clean-genreflex:
- 		@rm -rf lib/python/genreflex
-diff -Naur root.as-needed/cint/reflex/python/CMakeLists.txt root/cint/reflex/python/CMakeLists.txt
---- root.as-needed/cint/reflex/python/CMakeLists.txt	2011-07-10 10:42:49.074890651 +0400
-+++ root/cint/reflex/python/CMakeLists.txt	2011-07-10 10:43:21.496672876 +0400
-@@ -15,7 +15,7 @@
- #####################   sources   ####################
- 
- FILE(GLOB_RECURSE GENREFLEX_SRCS RELATIVE ${CMAKE_CURRENT_SOURCE_DIR} genreflex/*.py)
--SET(GENREFLEX_SCRIPT ${CMAKE_CURRENT_BINARY_DIR}/genreflex/genreflex.pyc PARENT_SCOPE)
-+SET(GENREFLEX_SCRIPT PARENT_SCOPE)
- 
- #####################  gccxmlpath ####################
- 
diff --git a/sci-physics/root/files/root-5.34.13-pythia8.patch b/sci-physics/root/files/root-5.34.13-pythia8.patch
deleted file mode 100644
index 07f62bb8c..000000000
--- a/sci-physics/root/files/root-5.34.13-pythia8.patch
+++ /dev/null
@@ -1,13 +0,0 @@
-diff --git a/montecarlo/pythia8/Module.mk b/montecarlo/pythia8/Module.mk
-index b3d0ee4..86fb3d5 100644
---- a/montecarlo/pythia8/Module.mk
-+++ b/montecarlo/pythia8/Module.mk
-@@ -50,7 +50,7 @@ $(PYTHIA8LIB):  $(PYTHIA8O) $(PYTHIA8DO) $(ORDER_) $(MAINLIBS) $(PYTHIA8LIBDEP)
- $(PYTHIA8DS):   $(PYTHIA8H) $(PYTHIA8L) $(ROOTCINTTMPDEP)
- 		$(MAKEDIR)
- 		@echo "Generating dictionary $@..."
--		$(ROOTCINTTMP) -f $@ -c -I$(FPYTHIA8INCDIR) $(PYTHIA8H) $(PYTHIA8L)
-+		$(ROOTCINTTMP) -f $@ -c -p -I$(FPYTHIA8INCDIR) $(PYTHIA8H) $(PYTHIA8L)
- 
- $(PYTHIA8MAP):  $(RLIBMAP) $(MAKEFILEDEP) $(PYTHIA8L)
- 		$(RLIBMAP) -o $@ -l $(PYTHIA8LIB) \
diff --git a/sci-physics/root/files/root-9999-dotfont.patch b/sci-physics/root/files/root-6.00.01-dotfont.patch
index 6c765f75a..6c765f75a 100644
--- a/sci-physics/root/files/root-9999-dotfont.patch
+++ b/sci-physics/root/files/root-6.00.01-dotfont.patch
diff --git a/sci-physics/root/files/root-6.00.01-geocad.patch b/sci-physics/root/files/root-6.00.01-geocad.patch
new file mode 100644
index 000000000..2742a74bd
--- /dev/null
+++ b/sci-physics/root/files/root-6.00.01-geocad.patch
@@ -0,0 +1,15 @@
+diff --git a/geom/geocad/inc/TGeoToOCC.h b/geom/geocad/inc/TGeoToOCC.h
+index 892f225..86eb9e1 100644
+--- a/geom/geocad/inc/TGeoToOCC.h
++++ b/geom/geocad/inc/TGeoToOCC.h
+@@ -13,8 +13,10 @@
+ #define ROOT_TGeoToOCC
+ 
+ //Cascade
++#define Printf Printf_opencascade
+ #include <TopoDS_Shape.hxx>
+ #include <TopoDS_Wire.hxx>
++#undef Printf
+ 
+ //Root
+ #ifndef ROOT_TGeoXtru
diff --git a/sci-physics/root/files/root-6.00.01-llvm.patch b/sci-physics/root/files/root-6.00.01-llvm.patch
new file mode 100644
index 000000000..c6abb353e
--- /dev/null
+++ b/sci-physics/root/files/root-6.00.01-llvm.patch
@@ -0,0 +1,13 @@
+diff --git a/interpreter/llvm/src/Makefile.config.in b/interpreter/llvm/src/Makefile.config.in
+index 7633be2..c8756b1 100644
+--- a/interpreter/llvm/src/Makefile.config.in
++++ b/interpreter/llvm/src/Makefile.config.in
+@@ -170,6 +170,8 @@ CXXFLAGS += @CXXFLAGS@
+ 
+ # Linker flags.
+ LDFLAGS += @LDFLAGS@
++NOUNDEF := -Wl,--no-undefined
++LDFLAGS := $(filter-out $(NOUNDEF),$(LDFLAGS))
+ 
+ # Path to the library archiver program.
+ AR_PATH = @AR@
diff --git a/sci-physics/root/files/root-6.00.01-nobyte-compile.patch b/sci-physics/root/files/root-6.00.01-nobyte-compile.patch
new file mode 100644
index 000000000..aa58f2068
--- /dev/null
+++ b/sci-physics/root/files/root-6.00.01-nobyte-compile.patch
@@ -0,0 +1,33 @@
+diff -Naur root.as-needed/bindings/pyroot/Module.mk root/bindings/pyroot/Module.mk
+--- root.as-needed/bindings/pyroot/Module.mk	2011-07-10 10:42:48.991561304 +0400
++++ root/bindings/pyroot/Module.mk	2011-07-10 10:43:21.493339703 +0400
+@@ -48,8 +48,6 @@
+ ROOTPY       := $(subst $(MODDIR),$(LPATH),$(ROOTPYS))
+ $(LPATH)/%.py: $(MODDIR)/%.py; cp $< $@
+ endif
+-ROOTPYC      := $(ROOTPY:.py=.pyc)
+-ROOTPYO      := $(ROOTPY:.py=.pyo)
+ 
+ # used in the main Makefile
+ ALLHDRS      += $(patsubst $(MODDIRI)/%.h,include/%.h,$(PYROOTH))
+@@ -68,10 +66,8 @@
+ include/%.h:    $(PYROOTDIRI)/%.h
+ 		cp $< $@
+ 
+-%.pyc: %.py;    python -c 'import py_compile; py_compile.compile( "$<" )'
+-%.pyo: %.py;    python -O -c 'import py_compile; py_compile.compile( "$<" )'
+ 
+-$(PYROOTLIB):   $(PYROOTO) $(PYROOTDO) $(ROOTPY) $(ROOTPYC) $(ROOTPYO) \
++$(PYROOTLIB):   $(PYROOTO) $(PYROOTDO) $(ROOTPY) \
+                 $(ROOTLIBSDEP) $(PYTHONLIBDEP)
+ 		@$(MAKELIB) $(PLATFORM) $(LD) "$(LDFLAGS)" \
+ 		  "$(SOFLAGS)" libPyROOT.$(SOEXT) $@ \
+@@ -113,7 +109,7 @@
+ 
+ distclean-$(MODNAME): clean-$(MODNAME)
+ 		@rm -f $(PYROOTDEP) $(PYROOTDS) $(PYROOTDH) $(PYROOTLIB) \
+-		   $(ROOTPY) $(ROOTPYC) $(ROOTPYO) $(PYROOTMAP) \
++		   $(ROOTPY) $(PYROOTMAP) \
+ 		   $(PYROOTPYD) $(PYTHON64DEP) $(PYTHON64)
+ 
+ distclean::     distclean-$(MODNAME)
diff --git a/sci-physics/root/files/root-5.32.00-prop-flags.patch b/sci-physics/root/files/root-6.00.01-prop-flags.patch
index 7dfeb1cc3..3a1002478 100644
--- a/sci-physics/root/files/root-5.32.00-prop-flags.patch
+++ b/sci-physics/root/files/root-6.00.01-prop-flags.patch
@@ -1,6 +1,8 @@
---- root/config/Makefile.in.orig	2013-01-21 22:04:43.011452938 +0400
-+++ root/config/Makefile.in	2013-01-21 22:04:18.027352209 +0400
-@@ -25,9 +25,9 @@
+diff --git a/config/Makefile.in b/config/Makefile.in
+index dd89044..4fc7de3 100644
+--- a/config/Makefile.in
++++ b/config/Makefile.in
+@@ -64,9 +64,9 @@ HOST           := @host@
  USECONFIG      := @useconfig@
  MKLIBOPTIONS   := @mkliboption@
  
@@ -10,6 +12,6 @@
 +EXTRA_CFLAGS   := -Iinclude @cflags@ $(CFLAGS)
 +EXTRA_CXXFLAGS := -Iinclude @cflags@ $(CXXFLAGS)
 +EXTRA_LDFLAGS  := @ldflags@ $(LDFLAGS)
+ WERROR         := @werror@
  WINRTDEBUG     := @winrtdebug@
- 
- GLBPATCHFLAGS  := @glbpatchcflags@
+ CTORSINITARRAY := @ctorsinitarray@