sci-visualization/fsleyes-widgets: new package, required for FSLeyes

Package-Manager: Portage-2.3.84, Repoman-2.3.20
Signed-off-by: Horea Christian <chr@chymera.eu>

6 files changed, 152 insertions, 0 deletions

diff --git a/sci-visualization/fsleyes-widgets/ChangeLog b/sci-visualization/fsleyes-widgets/ChangeLog
new file mode 100644
index 000000000..14d95538a
--- /dev/null
+++ b/sci-visualization/fsleyes-widgets/ChangeLog
@@ -0,0 +1,7 @@
+*fsleyes-widgets-0.8.4 (16 Jan 2020)
+
+  16 Jan 2020;  <chymera@gentoo.org>
+  +files/fsleyes-widgets-0.8.4-coverage.patch,
+  +files/fsleyes-widgets-0.8.4-tests.patch, +fsleyes-widgets-0.8.4.ebuild,
+  +metadata.xml, -fsleyes-widgets-0.6.5.ebuild, -manifest.xml:
+  sci-visualization/fsleyes-widgets: version bump 0.8.4 ahead of Gentoo Science
diff --git a/sci-visualization/fsleyes-widgets/Manifest b/sci-visualization/fsleyes-widgets/Manifest
new file mode 100644
index 000000000..ae5261582
--- /dev/null
+++ b/sci-visualization/fsleyes-widgets/Manifest
@@ -0,0 +1 @@
+DIST fsleyes-widgets-0.8.4.tar.gz 1063873 BLAKE2B 75aca3b5a3b3726cee821016df5d5da4adcb3db0bbe3ad24c371e63215584bc6e47d1fc941344c44db8c6d32f21332be2541b74aca31c0efbcb34b46a7f872d8 SHA512 b3b3a5f1a963022f82456c2d6978e02e6f0eb459a76d3aa9f924dbb484ad8359fe9344e9d914c859bd213406707b1b3456de8543b1400728b84fb503ae1fddc8
diff --git a/sci-visualization/fsleyes-widgets/files/fsleyes-widgets-0.8.4-coverage.patch b/sci-visualization/fsleyes-widgets/files/fsleyes-widgets-0.8.4-coverage.patch
new file mode 100644
index 000000000..6db8c01d8
--- /dev/null
+++ b/sci-visualization/fsleyes-widgets/files/fsleyes-widgets-0.8.4-coverage.patch
@@ -0,0 +1,10 @@
+diff --git a/setup.cfg b/setup.cfg
+index c3ebd936..d678d2df 100644
+--- a/setup.cfg
++++ b/setup.cfg
+@@ -9,4 +9,4 @@ ignore = E127,E201,E203,E221,E222,E241,E271,E272,E301,E302,E303,E701
+
+ [tool:pytest]
+ testpaths = tests
+-addopts   = -v --cov=fsleyes_widgets
++addopts   = -v
diff --git a/sci-visualization/fsleyes-widgets/files/fsleyes-widgets-0.8.4-tests.patch b/sci-visualization/fsleyes-widgets/files/fsleyes-widgets-0.8.4-tests.patch
new file mode 100644
index 000000000..20ef1a9ad
--- /dev/null
+++ b/sci-visualization/fsleyes-widgets/files/fsleyes-widgets-0.8.4-tests.patch
@@ -0,0 +1,69 @@
+diff --git a/tests/test_floatslider.py b/tests/test_floatslider.py
+index 87a2477..6bbedb7 100644
+--- a/tests/test_floatslider.py
++++ b/tests/test_floatslider.py
+@@ -140,8 +140,14 @@ def _test_FloatSlider_changeRange():
+     _test_widget_changeRange(slider)
+
+
++@pytest.mark.skip(reason="Known to fail on Gentoo:"
++    "https://github.com/pauldmccarthy/fsleyes-widgets/issues/1"
++    )
+ def test_FloatSlider_mouse_non_gtk():
+     run_with_wx(_test_FloatSlider_mouse)
++@pytest.mark.skip(reason="Known to fail on Gentoo:"
++    "https://github.com/pauldmccarthy/fsleyes-widgets/issues/1"
++    )
+ def test_FloatSlider_mouse_gtk():
+     with mock.patch('fsleyes_widgets.floatslider.wx.Platform', '__WXGTK__'):
+         run_with_wx(_test_FloatSlider_mouse)
+@@ -322,7 +328,9 @@ def _test_SliderSpinPanel_show_edit_limits():
+             if shouldEv: assert result[0] == expected
+             else:        assert result[0] is None
+
+-
++@pytest.mark.skip(reason="Known to fail on Gentoo:"
++    "https://github.com/pauldmccarthy/fsleyes-widgets/issues/1"
++    )
+ def test_SliderSpinPanel_events():
+     run_with_wx(_test_SliderSpinPanel_events)
+ def _test_SliderSpinPanel_events():
+diff --git a/tests/test_notebook.py b/tests/test_notebook.py
+index a02226c..74e8f63 100644
+--- a/tests/test_notebook.py
++++ b/tests/test_notebook.py
+@@ -190,6 +190,9 @@ def _test_enable_disable_show_hide(side, ornt):
+     assert notebook.GetSelection() == 1
+
+
++@pytest.mark.skip(reason="Known to fail on Gentoo:"
++    "https://github.com/pauldmccarthy/fsleyes-widgets/issues/1"
++    )
+ def test_event():
+     nb_run_with_wx(_test_event)
+ def _test_event(side, ornt):
+diff --git a/tests/test_rangeslider.py b/tests/test_rangeslider.py
+index 7ddbed6..51267b3 100644
+--- a/tests/test_rangeslider.py
++++ b/tests/test_rangeslider.py
+@@ -103,6 +103,9 @@ def _test_RangePanel_logic_spin():
+     _test_RangePanel_logic(panel)
+
+
++@pytest.mark.skip(reason="Known to fail on Gentoo:"
++    "https://github.com/pauldmccarthy/fsleyes-widgets/issues/1"
++    )
+ def test_RangePanel_events_slider():
+     run_with_wx(_test_RangePanel_events_slider)
+ def _test_RangePanel_events_slider():
+@@ -236,6 +239,9 @@ def _test_RangeSliderSpinPanel_logic():
+     _test_RangePanel_logic(panel)
+
+
++@pytest.mark.skip(reason="Known to fail on Gentoo:"
++    "https://github.com/pauldmccarthy/fsleyes-widgets/issues/1"
++    )
+ def test_RangeSliderSpinPanel_onchange():
+     run_with_wx(_test_RangeSliderSpinPanel_onchange)
+ def _test_RangeSliderSpinPanel_onchange():
+
diff --git a/sci-visualization/fsleyes-widgets/fsleyes-widgets-0.8.4.ebuild b/sci-visualization/fsleyes-widgets/fsleyes-widgets-0.8.4.ebuild
new file mode 100644
index 000000000..b9766ca40
--- /dev/null
+++ b/sci-visualization/fsleyes-widgets/fsleyes-widgets-0.8.4.ebuild
@@ -0,0 +1,47 @@
+# Copyright 1999-2020 Gentoo Authors
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=7
+
+PYTHON_COMPAT=( python3_{6,7} )
+
+inherit distutils-r1 virtualx
+
+MY_P="widgets-${PV}"
+
+DESCRIPTION="The new FSL image viewer, first released with FSL 5.0.10"
+HOMEPAGE="https://git.fmrib.ox.ac.uk/fsl/fsleyes/fsleyes/tree/master"
+SRC_URI="https://git.fmrib.ox.ac.uk/fsl/fsleyes/widgets/-/archive/${PV}/${MY_P}.tar.gz -> ${P}.tar.gz"
+
+LICENSE="BSD"
+SLOT="0"
+KEYWORDS="~amd64 ~x86"
+IUSE="test"
+
+DEPEND="
+	test? (
+		dev-python/pytest[${PYTHON_USEDEP}]
+		)
+	dev-python/setuptools[${PYTHON_USEDEP}]
+	"
+RDEPEND="
+	dev-python/deprecation[${PYTHON_USEDEP}]
+	=dev-python/numpy-1*[${PYTHON_USEDEP}]
+	dev-python/matplotlib[${PYTHON_USEDEP}]
+	=dev-python/six-1*[${PYTHON_USEDEP}]
+	dev-python/wxpython[${PYTHON_USEDEP}]
+	"
+
+S="${WORKDIR}/${MY_P}"
+
+PATCHES=(
+	"${FILESDIR}/fsleyes-widgets-0.8.4-coverage.patch"
+	"${FILESDIR}/fsleyes-widgets-0.8.4-tests.patch"
+)
+
+python_test() {
+	# If this could be set for the eclass, it might fix some of the tests:
+	# https://github.com/pauldmccarthy/fsleyes-widgets/issues/1#issuecomment-575387724
+	#xvfbargs="-screen 0 1920x1200x24 +extension RANDR"
+	virtx pytest --verbose || die
+}
diff --git a/sci-visualization/fsleyes-widgets/metadata.xml b/sci-visualization/fsleyes-widgets/metadata.xml
new file mode 100644
index 000000000..153c0c611
--- /dev/null
+++ b/sci-visualization/fsleyes-widgets/metadata.xml
@@ -0,0 +1,18 @@
+<?xml version='1.0' encoding='UTF-8'?>
+<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<pkgmetadata>
+	<maintainer type="person">
+		<email>chr@chymera.eu</email>
+		<name>Horea Christian</name>
+	</maintainer>
+	<maintainer type="project">
+		<email>sci@gentoo.org</email>
+		<name>Gentoo Science Project</name>
+	</maintainer>
+	<longdescription lang="en">
+		FSLeyes is a viewer for 3D and 4D neuroimaging data. It is intended as a
+		replacement for the much loved FSLView. FSLeyes offers similar functionality
+		to FSLView, and aims to improve and expand upon this functionality in many
+		ways.
+	</longdescription>
+</pkgmetadata>