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| author |   Justin Lecher (jlec) <jlec@gentoo.org> | 2010-02-11 23:32:28 +0100 |
|---|---|---|
| committer | Justin Lecher (jlec) <jlec@gentoo.org> | 2010-02-11 23:32:59 +0100 |
| commit | e54a1c3c78a16b35acbeec78a1cc22b697a9359c (patch) | |
| tree | 64884f687b28d6837f83b29a148abb761461d3e2 /scripts/stage-blast-db | |
| parent | InCvs (diff) | |
| download | sci-e54a1c3c78a16b35acbeec78a1cc22b697a9359c.tar.gz sci-e54a1c3c78a16b35acbeec78a1cc22b697a9359c.tar.bz2 sci-e54a1c3c78a16b35acbeec78a1cc22b697a9359c.zip | |
scripts dir cleaned
Diffstat (limited to 'scripts/stage-blast-db')
| -rw-r--r-- | scripts/stage-blast-db | 41 |
1 files changed, 0 insertions, 41 deletions
diff --git a/scripts/stage-blast-db b/scripts/stage-blast-db deleted file mode 100644 index e3722cfee..000000000 --- a/scripts/stage-blast-db +++ /dev/null @@ -1,41 +0,0 @@ -#!/bin/bash - -DATE=$(date "+%Y%m%d") -CHANGE_ENTRY="automatic bump" - -# Find the Documentation dir from sci overlay - -if [[ -f $(basename $0) ]]; then - REPO_DOC=$(pwd) -else - REPO_DOC=$(dirname $0) -fi - - -cd /tmp; -wget http://www.ncbi.nlm.nih.gov/blast/docs/update_blastdb.pl >& /dev/null - -# Ask for which database - -echo "Which db should be updated ?" -echo "" -perl -w update_blastdb.pl --passiv --showall -echo "" -read DB - - -# Fetch the database and rename it - -perl -w update_blastdb.pl --passiv ${DB} - -for mydb in ${DB}*; do - mv ${mydb} ${mydb#.tar.gz}-${DATE}.tar.gz -done - -cd ${REPO_DOC}/../sci-libs/blast-db-${DB}; -git mv blast-db-${DB}*ebuild blast-db-${DB}-${DATE}.ebuild -git add . -echangelog "${CHANGE_ENTRY}" -reapoman -d -v fix -git add . - |