diff options
318 files changed, 421 insertions, 513 deletions
diff --git a/app-benchmarks/btl/metadata.xml b/app-benchmarks/btl/metadata.xml index 1276dc69c..0e64e0503 100644 --- a/app-benchmarks/btl/metadata.xml +++ b/app-benchmarks/btl/metadata.xml @@ -1,4 +1,4 @@ -<?xml version="1.0" encoding="UTF-8"?> +<?xml version='1.0' encoding='UTF-8'?> <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <maintainer type="person"> diff --git a/app-benchmarks/numbench/metadata.xml b/app-benchmarks/numbench/metadata.xml index 810ffee12..91ead3a68 100644 --- a/app-benchmarks/numbench/metadata.xml +++ b/app-benchmarks/numbench/metadata.xml @@ -1,4 +1,4 @@ -<?xml version="1.0" encoding="UTF-8"?> +<?xml version='1.0' encoding='UTF-8'?> <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <maintainer type="person"> diff --git a/app-doc/root-docs/metadata.xml b/app-doc/root-docs/metadata.xml index 47caabb1d..27aa72d21 100644 --- a/app-doc/root-docs/metadata.xml +++ b/app-doc/root-docs/metadata.xml @@ -1,4 +1,4 @@ -<?xml version="1.0" encoding="UTF-8"?> +<?xml version='1.0' encoding='UTF-8'?> <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <maintainer type="person"> @@ -19,7 +19,4 @@ <flag name="math">Provide all math related documentation</flag> <flag name="metric">Default to A4 paper size and metric measurement. Letter will be used otherwise</flag> </use> - <upstream> - <remote-id type="sourceforge">tmva</remote-id> - </upstream> </pkgmetadata> diff --git a/app-vim/vim-gromacs/metadata.xml b/app-vim/vim-gromacs/metadata.xml index 704b2eb0e..4a5c9ab9d 100644 --- a/app-vim/vim-gromacs/metadata.xml +++ b/app-vim/vim-gromacs/metadata.xml @@ -1,4 +1,4 @@ -<?xml version="1.0" encoding="UTF-8"?> +<?xml version='1.0' encoding='UTF-8'?> <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <maintainer type="project"> @@ -7,7 +7,7 @@ </maintainer> <longdescription lang="en"> VIM syntax plugin which provides syntax highlighting for the gromacs files. -</longdescription> + </longdescription> <upstream> <remote-id type="github">HubLot/vim-gromacs</remote-id> </upstream> diff --git a/dev-cpp/eigen/metadata.xml b/dev-cpp/eigen/metadata.xml index 6d5cb6666..cfb88d051 100644 --- a/dev-cpp/eigen/metadata.xml +++ b/dev-cpp/eigen/metadata.xml @@ -1,4 +1,4 @@ -<?xml version="1.0" encoding="UTF-8"?> +<?xml version='1.0' encoding='UTF-8'?> <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <maintainer type="project"> diff --git a/dev-cpp/icnc/metadata.xml b/dev-cpp/icnc/metadata.xml index 4ab9fc666..1b36049c6 100644 --- a/dev-cpp/icnc/metadata.xml +++ b/dev-cpp/icnc/metadata.xml @@ -1,11 +1,8 @@ -<?xml version="1.0" encoding="UTF-8"?> +<?xml version='1.0' encoding='UTF-8'?> <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <maintainer type="person"> <email>ottxor@gentoo.org</email> <name>Christoph Junghans</name> </maintainer> - <upstream> - <remote-id type="github">icnc/icnc</remote-id> - </upstream> </pkgmetadata> diff --git a/dev-java/gluegen/metadata.xml b/dev-java/gluegen/metadata.xml index 9fc3e6b55..fa1706ad0 100644 --- a/dev-java/gluegen/metadata.xml +++ b/dev-java/gluegen/metadata.xml @@ -1,4 +1,4 @@ -<?xml version="1.0" encoding="UTF-8"?> +<?xml version='1.0' encoding='UTF-8'?> <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <maintainer type="project"> @@ -15,7 +15,7 @@ generates interfaces. It has the ability to perform significant transformations on the IR before glue code emission. GlueGen is currently powerful enough to bind even low-level APIs such as the Java Native Interface (JNI) and the AWT Native Interface (JAWT) back up to the Java programming language. -</longdescription> + </longdescription> <upstream> <remote-id type="github">sgothel/gluegen</remote-id> </upstream> diff --git a/dev-java/htsjdk/metadata.xml b/dev-java/htsjdk/metadata.xml index 6c001f352..feb7e6155 100644 --- a/dev-java/htsjdk/metadata.xml +++ b/dev-java/htsjdk/metadata.xml @@ -10,7 +10,6 @@ <name>Gentoo Biology Project</name> </maintainer> <upstream> - <remote-id type="sourceforge">picard</remote-id> <remote-id type="github">samtools/htsjdk</remote-id> </upstream> </pkgmetadata> diff --git a/dev-java/jeuclid-core/metadata.xml b/dev-java/jeuclid-core/metadata.xml index 5e60bad07..5e72e0411 100644 --- a/dev-java/jeuclid-core/metadata.xml +++ b/dev-java/jeuclid-core/metadata.xml @@ -1,4 +1,4 @@ -<?xml version="1.0" encoding="UTF-8"?> +<?xml version='1.0' encoding='UTF-8'?> <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <maintainer type="project"> @@ -14,7 +14,7 @@ * A component for Apache Cocoon This package contains the basic JEuclid rendering and document handling classes. -</longdescription> + </longdescription> <upstream> <remote-id type="sourceforge">jeuclid</remote-id> </upstream> diff --git a/dev-java/jogl/metadata.xml b/dev-java/jogl/metadata.xml index 6a8c7046c..88a073443 100644 --- a/dev-java/jogl/metadata.xml +++ b/dev-java/jogl/metadata.xml @@ -1,4 +1,4 @@ -<?xml version="1.0" encoding="UTF-8"?> +<?xml version='1.0' encoding='UTF-8'?> <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <maintainer type="project"> @@ -8,7 +8,7 @@ <longdescription lang="en"> JOGL provides Java with a Binding for the OpenGL® API (JSR-231), and is designed to provide hardware-supported 3D graphics to applications written in Java. -</longdescription> + </longdescription> <use> <flag name="cg">Enable NVidia Cg binding.</flag> </use> diff --git a/dev-lang/conceptual/metadata.xml b/dev-lang/conceptual/metadata.xml index bf09c654c..9766ecb5d 100644 --- a/dev-lang/conceptual/metadata.xml +++ b/dev-lang/conceptual/metadata.xml @@ -1,4 +1,4 @@ -<?xml version="1.0" encoding="UTF-8"?> +<?xml version='1.0' encoding='UTF-8'?> <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <maintainer type="person"> diff --git a/dev-lang/terra/metadata.xml b/dev-lang/terra/metadata.xml index 7fa6fee0b..3b7daac27 100644 --- a/dev-lang/terra/metadata.xml +++ b/dev-lang/terra/metadata.xml @@ -1,4 +1,4 @@ -<?xml version="1.0" encoding="UTF-8"?> +<?xml version='1.0' encoding='UTF-8'?> <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <maintainer type="person"> diff --git a/dev-libs/boost-compute/metadata.xml b/dev-libs/boost-compute/metadata.xml index f46139c8d..50b082f43 100644 --- a/dev-libs/boost-compute/metadata.xml +++ b/dev-libs/boost-compute/metadata.xml @@ -1,4 +1,4 @@ -<?xml version="1.0" encoding="UTF-8"?> +<?xml version='1.0' encoding='UTF-8'?> <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <maintainer type="person"> diff --git a/dev-libs/libcuda/metadata.xml b/dev-libs/libcuda/metadata.xml index 1577ca222..137a77828 100644 --- a/dev-libs/libcuda/metadata.xml +++ b/dev-libs/libcuda/metadata.xml @@ -1,4 +1,4 @@ -<?xml version="1.0" encoding="UTF-8"?> +<?xml version='1.0' encoding='UTF-8'?> <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <maintainer type="person"> diff --git a/dev-libs/libgdev/metadata.xml b/dev-libs/libgdev/metadata.xml index 1577ca222..137a77828 100644 --- a/dev-libs/libgdev/metadata.xml +++ b/dev-libs/libgdev/metadata.xml @@ -1,4 +1,4 @@ -<?xml version="1.0" encoding="UTF-8"?> +<?xml version='1.0' encoding='UTF-8'?> <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <maintainer type="person"> diff --git a/dev-libs/utf8proc/metadata.xml b/dev-libs/utf8proc/metadata.xml index e254e530d..bea4b0d50 100644 --- a/dev-libs/utf8proc/metadata.xml +++ b/dev-libs/utf8proc/metadata.xml @@ -1,4 +1,4 @@ -<?xml version="1.0" encoding="UTF-8"?> +<?xml version='1.0' encoding='UTF-8'?> <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <maintainer type="project"> @@ -13,7 +13,7 @@ converts for example the characters “Hyphen” (U+2010), “Minus” (U+2212) and “Hyphen-Minus” (U+002D, ASCII Minus) all into the ASCII minus sign, to make them equal for comparisons. -</longdescription> + </longdescription> <upstream> <remote-id type="github">JuliaLang/utf8proc</remote-id> </upstream> diff --git a/dev-ml/lacaml/metadata.xml b/dev-ml/lacaml/metadata.xml index e5248b9ad..d11df4158 100644 --- a/dev-ml/lacaml/metadata.xml +++ b/dev-ml/lacaml/metadata.xml @@ -1,4 +1,4 @@ -<?xml version="1.0" encoding="UTF-8"?> +<?xml version='1.0' encoding='UTF-8'?> <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <maintainer type="project"> diff --git a/dev-perl/BTLib/metadata.xml b/dev-perl/BTLib/metadata.xml index c928da25a..aa38b1c12 100644 --- a/dev-perl/BTLib/metadata.xml +++ b/dev-perl/BTLib/metadata.xml @@ -1,4 +1,4 @@ -<?xml version="1.0" encoding="UTF-8"?> +<?xml version='1.0' encoding='UTF-8'?> <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <maintainer type="project"> diff --git a/dev-perl/opal-client/metadata.xml b/dev-perl/opal-client/metadata.xml index 5f29f0643..1cfc2883a 100644 --- a/dev-perl/opal-client/metadata.xml +++ b/dev-perl/opal-client/metadata.xml @@ -1,4 +1,4 @@ -<?xml version="1.0" encoding="UTF-8"?> +<?xml version='1.0' encoding='UTF-8'?> <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <maintainer type="project"> diff --git a/dev-python/PeakUtils/metadata.xml b/dev-python/PeakUtils/metadata.xml index a4c17d458..32d3251d5 100644 --- a/dev-python/PeakUtils/metadata.xml +++ b/dev-python/PeakUtils/metadata.xml @@ -13,7 +13,7 @@ increase the resolution of the peak detection. </longdescription> <upstream> - <remote-id type="pypi">PeakUtils</remote-id> <remote-id type="bitbucket">lucashnegri/peakutils</remote-id> + <remote-id type="pypi">PeakUtils</remote-id> </upstream> </pkgmetadata> diff --git a/dev-python/PyVISA-py/metadata.xml b/dev-python/PyVISA-py/metadata.xml index be11d627d..26acc9198 100644 --- a/dev-python/PyVISA-py/metadata.xml +++ b/dev-python/PyVISA-py/metadata.xml @@ -1,4 +1,4 @@ -<?xml version="1.0" encoding="UTF-8"?> +<?xml version='1.0' encoding='UTF-8'?> <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <maintainer type="person"> @@ -14,7 +14,7 @@ Instrument Software Architecture" (VISA) in pure Python. </longdescription> <upstream> - <remote-id type="pypi">PyVISA-py</remote-id> <remote-id type="github">hgrecco/pyvisa-py</remote-id> + <remote-id type="pypi">PyVISA-py</remote-id> </upstream> </pkgmetadata> diff --git a/dev-python/PyVISA/metadata.xml b/dev-python/PyVISA/metadata.xml index c7529e22f..19e1a51ca 100644 --- a/dev-python/PyVISA/metadata.xml +++ b/dev-python/PyVISA/metadata.xml @@ -1,4 +1,4 @@ -<?xml version="1.0" encoding="UTF-8"?> +<?xml version='1.0' encoding='UTF-8'?> <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <maintainer type="person"> @@ -15,7 +15,7 @@ test equipment via GPIB, RS232, Ethernet or USB. </longdescription> <upstream> + <remote-id type="github">hgrecco/pyvisa-py</remote-id> <remote-id type="pypi">PyVISA</remote-id> - <remote-id type="github">hgrecco/pyvisa</remote-id> </upstream> </pkgmetadata> diff --git a/dev-python/RecSQL/metadata.xml b/dev-python/RecSQL/metadata.xml index c0ad26b50..355e9a516 100644 --- a/dev-python/RecSQL/metadata.xml +++ b/dev-python/RecSQL/metadata.xml @@ -1,4 +1,4 @@ -<?xml version="1.0" encoding="UTF-8"?> +<?xml version='1.0' encoding='UTF-8'?> <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <maintainer type="person"> @@ -9,7 +9,4 @@ <email>sci@gentoo.org</email> <name>Gentoo Science Project</name> </maintainer> - <upstream> - <remote-id type="github">orbeckst/RecSQL</remote-id> - </upstream> </pkgmetadata> diff --git a/dev-python/arrayfire-python/metadata.xml b/dev-python/arrayfire-python/metadata.xml index 18b1016e2..12f0d0584 100644 --- a/dev-python/arrayfire-python/metadata.xml +++ b/dev-python/arrayfire-python/metadata.xml @@ -1,4 +1,4 @@ -<?xml version="1.0" encoding="UTF-8"?> +<?xml version='1.0' encoding='UTF-8'?> <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <maintainer type="person"> diff --git a/dev-python/astropy-helpers/metadata.xml b/dev-python/astropy-helpers/metadata.xml index 9dffe2edc..68d40928a 100644 --- a/dev-python/astropy-helpers/metadata.xml +++ b/dev-python/astropy-helpers/metadata.xml @@ -1,4 +1,4 @@ -<?xml version="1.0" encoding="UTF-8"?> +<?xml version='1.0' encoding='UTF-8'?> <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <maintainer type="project"> @@ -10,7 +10,6 @@ that may be used by other projects. </longdescription> <upstream> - <remote-id type="pypi">astropy-helpers</remote-id> <remote-id type="github">astropy/astropy-helpers</remote-id> </upstream> </pkgmetadata> diff --git a/dev-python/astroquery/metadata.xml b/dev-python/astroquery/metadata.xml index 224276aae..84e169547 100644 --- a/dev-python/astroquery/metadata.xml +++ b/dev-python/astroquery/metadata.xml @@ -1,4 +1,4 @@ -<?xml version="1.0" encoding="UTF-8"?> +<?xml version='1.0' encoding='UTF-8'?> <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <maintainer type="project"> @@ -11,7 +11,6 @@ to support many services with a uniform API. </longdescription> <upstream> - <remote-id type="pypi">astroquery</remote-id> <remote-id type="github">astropy/astroquery</remote-id> </upstream> </pkgmetadata> diff --git a/dev-python/brewer2mpl/metadata.xml b/dev-python/brewer2mpl/metadata.xml index 4f2cd15bf..42211a68b 100644 --- a/dev-python/brewer2mpl/metadata.xml +++ b/dev-python/brewer2mpl/metadata.xml @@ -1,4 +1,4 @@ -<?xml version="1.0" encoding="UTF-8"?> +<?xml version='1.0' encoding='UTF-8'?> <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <maintainer type="person"> @@ -16,7 +16,7 @@ ships with brewer2mpl so no internet connection is required. </longdescription> <upstream> - <remote-id type="pypi">brewer2mpl</remote-id> <remote-id type="github">jiffyclub/brewer2mpl</remote-id> + <remote-id type="pypi">brewer2mpl</remote-id> </upstream> </pkgmetadata> diff --git a/dev-python/ccdproc/metadata.xml b/dev-python/ccdproc/metadata.xml index a254a5734..e634ec8d8 100644 --- a/dev-python/ccdproc/metadata.xml +++ b/dev-python/ccdproc/metadata.xml @@ -1,4 +1,4 @@ -<?xml version="1.0" encoding="UTF-8"?> +<?xml version='1.0' encoding='UTF-8'?> <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <maintainer type="project"> @@ -11,7 +11,6 @@ and bad pixel tracking through the reduction steps. </longdescription> <upstream> - <remote-id type="pypi">ccdproc</remote-id> <remote-id type="github">astropy/ccdproc</remote-id> </upstream> </pkgmetadata> diff --git a/dev-python/coards/metadata.xml b/dev-python/coards/metadata.xml index 34578d15d..77d8a36e7 100644 --- a/dev-python/coards/metadata.xml +++ b/dev-python/coards/metadata.xml @@ -1,4 +1,4 @@ -<?xml version="1.0" encoding="UTF-8"?> +<?xml version='1.0' encoding='UTF-8'?> <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <maintainer type="person"> diff --git a/dev-python/dijitso/metadata.xml b/dev-python/dijitso/metadata.xml index 489293405..cb17acf08 100644 --- a/dev-python/dijitso/metadata.xml +++ b/dev-python/dijitso/metadata.xml @@ -1,4 +1,4 @@ -<?xml version="1.0" encoding="UTF-8"?> +<?xml version='1.0' encoding='UTF-8'?> <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <maintainer type="project"> @@ -12,7 +12,6 @@ library, and thus do not need wrapping in a nice Python interface. </longdescription> <upstream> - <remote-id type="bitbucket">fenics-project/ffc</remote-id> - <remote-id type="launchpad">ffc</remote-id> + <remote-id type="bitbucket">fenics-project/dijitso</remote-id> </upstream> </pkgmetadata> diff --git a/dev-python/dimensionful/metadata.xml b/dev-python/dimensionful/metadata.xml index 310bd052e..c156f9144 100644 --- a/dev-python/dimensionful/metadata.xml +++ b/dev-python/dimensionful/metadata.xml @@ -1,4 +1,4 @@ -<?xml version="1.0" encoding="UTF-8"?> +<?xml version='1.0' encoding='UTF-8'?> <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <maintainer type="person"> diff --git a/dev-python/ffc/metadata.xml b/dev-python/ffc/metadata.xml index c18ab8720..35bb1f59e 100644 --- a/dev-python/ffc/metadata.xml +++ b/dev-python/ffc/metadata.xml @@ -1,4 +1,4 @@ -<?xml version="1.0" encoding="UTF-8"?> +<?xml version='1.0' encoding='UTF-8'?> <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <maintainer type="project"> @@ -15,6 +15,5 @@ </longdescription> <upstream> <remote-id type="bitbucket">fenics-project/ffc</remote-id> - <remote-id type="launchpad">ffc</remote-id> </upstream> </pkgmetadata> diff --git a/dev-python/ffnet/metadata.xml b/dev-python/ffnet/metadata.xml index 81dcc789e..84e07f038 100644 --- a/dev-python/ffnet/metadata.xml +++ b/dev-python/ffnet/metadata.xml @@ -13,7 +13,6 @@ <flag name="matplotlib">Use matplotlib for drawing</flag> </use> <upstream> - <remote-id type="github">mrkwjc/ffnet</remote-id> <remote-id type="pypi">ffnet</remote-id> <remote-id type="sourceforge">ffnet</remote-id> </upstream> diff --git a/dev-python/ffnetui/metadata.xml b/dev-python/ffnetui/metadata.xml index 50cd8d0c5..fe996f826 100644 --- a/dev-python/ffnetui/metadata.xml +++ b/dev-python/ffnetui/metadata.xml @@ -9,7 +9,6 @@ GUI for ffnet - feed forward neural network for python </longdescription> <upstream> - <remote-id type="github">mrkwjc/ffnetui</remote-id> <remote-id type="pypi">ffnetui</remote-id> <remote-id type="sourceforge">ffnet</remote-id> </upstream> diff --git a/dev-python/fiat/metadata.xml b/dev-python/fiat/metadata.xml index c28ae4e03..c3aad9140 100644 --- a/dev-python/fiat/metadata.xml +++ b/dev-python/fiat/metadata.xml @@ -1,4 +1,4 @@ -<?xml version="1.0" encoding="UTF-8"?> +<?xml version='1.0' encoding='UTF-8'?> <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <maintainer type="project"> @@ -17,6 +17,5 @@ </longdescription> <upstream> <remote-id type="bitbucket">fenics-project/fiat</remote-id> - <remote-id type="launchpad">fiat</remote-id> </upstream> </pkgmetadata> diff --git a/dev-python/gammapy/metadata.xml b/dev-python/gammapy/metadata.xml index 413f49bd4..9ab0a8d12 100644 --- a/dev-python/gammapy/metadata.xml +++ b/dev-python/gammapy/metadata.xml @@ -1,4 +1,4 @@ -<?xml version="1.0" encoding="UTF-8"?> +<?xml version='1.0' encoding='UTF-8'?> <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <maintainer type="project"> @@ -11,7 +11,6 @@ H.E.S.S, and CTA in primarily Galactic plane survey studies. </longdescription> <upstream> - <remote-id type="pypi">gammapy</remote-id> <remote-id type="github">gammapy/gammapy</remote-id> </upstream> </pkgmetadata> diff --git a/dev-python/hdf5storage/metadata.xml b/dev-python/hdf5storage/metadata.xml index 320a9f946..8ce73fe8c 100644 --- a/dev-python/hdf5storage/metadata.xml +++ b/dev-python/hdf5storage/metadata.xml @@ -1,4 +1,4 @@ -<?xml version="1.0" encoding="UTF-8"?> +<?xml version='1.0' encoding='UTF-8'?> <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <maintainer type="person"> @@ -17,7 +17,7 @@ extension and some extra meta-data. </longdescription> <upstream> - <remote-id type="pypi">hdf5storage</remote-id> <remote-id type="github">frejanordsiek/hdf5storage</remote-id> + <remote-id type="pypi">hdf5storage</remote-id> </upstream> </pkgmetadata> diff --git a/dev-python/imageutils/metadata.xml b/dev-python/imageutils/metadata.xml index 90af04221..8f422b20a 100644 --- a/dev-python/imageutils/metadata.xml +++ b/dev-python/imageutils/metadata.xml @@ -1,4 +1,4 @@ -<?xml version="1.0" encoding="UTF-8"?> +<?xml version='1.0' encoding='UTF-8'?> <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <maintainer type="project"> @@ -11,7 +11,6 @@ package before the 1.0 release. </longdescription> <upstream> - <remote-id type="pypi">imageutils</remote-id> <remote-id type="github">astropy/imageutils</remote-id> </upstream> </pkgmetadata> diff --git a/dev-python/instant/metadata.xml b/dev-python/instant/metadata.xml index b3c7ae99c..0aa8827a4 100644 --- a/dev-python/instant/metadata.xml +++ b/dev-python/instant/metadata.xml @@ -1,4 +1,4 @@ -<?xml version="1.0" encoding="UTF-8"?> +<?xml version='1.0' encoding='UTF-8'?> <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <maintainer type="project"> @@ -12,6 +12,5 @@ </longdescription> <upstream> <remote-id type="bitbucket">fenics-project/instant</remote-id> - <remote-id type="launchpad">instant</remote-id> </upstream> </pkgmetadata> diff --git a/dev-python/ipykernel/metadata.xml b/dev-python/ipykernel/metadata.xml index 973783bf3..d87bc07db 100644 --- a/dev-python/ipykernel/metadata.xml +++ b/dev-python/ipykernel/metadata.xml @@ -1,4 +1,4 @@ -<?xml version="1.0" encoding="UTF-8"?> +<?xml version='1.0' encoding='UTF-8'?> <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <maintainer type="project"> @@ -9,7 +9,6 @@ This package provides the IPython kernel for Jupyter. </longdescription> <upstream> - <remote-id type="pypi">ipykernel</remote-id> <remote-id type="github">ipython/ipykernel</remote-id> </upstream> </pkgmetadata> diff --git a/dev-python/ipyparallel/metadata.xml b/dev-python/ipyparallel/metadata.xml index 47348926e..bd6c5c2e0 100644 --- a/dev-python/ipyparallel/metadata.xml +++ b/dev-python/ipyparallel/metadata.xml @@ -1,4 +1,4 @@ -<?xml version="1.0" encoding="UTF-8"?> +<?xml version='1.0' encoding='UTF-8'?> <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <maintainer type="project"> @@ -9,7 +9,4 @@ Interactive Parallel Computing with IPython. ipyparallel is the new home of IPython.parallel. </longdescription> - <upstream> - <remote-id type="pypi">ipyparallel</remote-id> - </upstream> </pkgmetadata> diff --git a/dev-python/ipython_genutils/metadata.xml b/dev-python/ipython_genutils/metadata.xml index c9deb0b09..52164c08d 100644 --- a/dev-python/ipython_genutils/metadata.xml +++ b/dev-python/ipython_genutils/metadata.xml @@ -1,4 +1,4 @@ -<?xml version="1.0" encoding="UTF-8"?> +<?xml version='1.0' encoding='UTF-8'?> <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <maintainer type="project"> @@ -12,7 +12,6 @@ go away. No packages outside IPython/Jupyter should depend on it. </longdescription> <upstream> - <remote-id type="pypi">ipython_genutils</remote-id> <remote-id type="github">ipython/ipython_genutils</remote-id> </upstream> </pkgmetadata> diff --git a/dev-python/ipywidgets/metadata.xml b/dev-python/ipywidgets/metadata.xml index 8bc51992f..4495ebb74 100644 --- a/dev-python/ipywidgets/metadata.xml +++ b/dev-python/ipywidgets/metadata.xml @@ -1,4 +1,4 @@ -<?xml version="1.0" encoding="UTF-8"?> +<?xml version='1.0' encoding='UTF-8'?> <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <maintainer type="project"> diff --git a/dev-python/jupyter_client/metadata.xml b/dev-python/jupyter_client/metadata.xml index 53a086c17..fbd1af5b5 100644 --- a/dev-python/jupyter_client/metadata.xml +++ b/dev-python/jupyter_client/metadata.xml @@ -1,4 +1,4 @@ -<?xml version="1.0" encoding="UTF-8"?> +<?xml version='1.0' encoding='UTF-8'?> <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <maintainer type="project"> @@ -11,7 +11,4 @@ kernels. It also provides the jupyter kernelspec entrypoint for installing kernelspecs for use with Jupyter frontends. </longdescription> - <upstream> - <remote-id type="pypi">jupyter_client</remote-id> - </upstream> </pkgmetadata> diff --git a/dev-python/jupyter_console/metadata.xml b/dev-python/jupyter_console/metadata.xml index 6fc0fef28..a2b19aeaf 100644 --- a/dev-python/jupyter_console/metadata.xml +++ b/dev-python/jupyter_console/metadata.xml @@ -1,4 +1,4 @@ -<?xml version="1.0" encoding="UTF-8"?> +<?xml version='1.0' encoding='UTF-8'?> <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <maintainer type="project"> @@ -9,7 +9,4 @@ A terminal-based console frontend for Jupyter kernels. This code is based on the single-process IPython terminal. </longdescription> - <upstream> - <remote-id type="pypi">jupyter_console</remote-id> - </upstream> </pkgmetadata> diff --git a/dev-python/jupyter_core/metadata.xml b/dev-python/jupyter_core/metadata.xml index 467bb37a5..88e71aa2c 100644 --- a/dev-python/jupyter_core/metadata.xml +++ b/dev-python/jupyter_core/metadata.xml @@ -1,4 +1,4 @@ -<?xml version="1.0" encoding="UTF-8"?> +<?xml version='1.0' encoding='UTF-8'?> <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <maintainer type="project"> @@ -10,7 +10,4 @@ This package contains base application classes and configuration inhertited by other projects. It doesn't do much on its own. </longdescription> - <upstream> - <remote-id type="pypi">jupyter_core</remote-id> - </upstream> </pkgmetadata> diff --git a/dev-python/matlab_wrapper/metadata.xml b/dev-python/matlab_wrapper/metadata.xml index bad1f381d..38df0353a 100644 --- a/dev-python/matlab_wrapper/metadata.xml +++ b/dev-python/matlab_wrapper/metadata.xml @@ -1,4 +1,4 @@ -<?xml version="1.0" encoding="UTF-8"?> +<?xml version='1.0' encoding='UTF-8'?> <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <maintainer type="person"> @@ -17,7 +17,7 @@ as a regular Python module. </longdescription> <upstream> - <remote-id type="pypi">matlab_wrapper</remote-id> <remote-id type="github">mrkrd/matlab_wrapper</remote-id> + <remote-id type="pypi">matlab_wrapper</remote-id> </upstream> </pkgmetadata> diff --git a/dev-python/matplotlib-venn/metadata.xml b/dev-python/matplotlib-venn/metadata.xml index 8401ce8b5..cae4c83f9 100644 --- a/dev-python/matplotlib-venn/metadata.xml +++ b/dev-python/matplotlib-venn/metadata.xml @@ -6,7 +6,6 @@ <name>Gentoo Science Project</name> </maintainer> <upstream> - <remote-id type="github">matplotlib-venn</remote-id> <remote-id type="pypi">matplotlib-venn</remote-id> </upstream> </pkgmetadata> diff --git a/dev-python/matplotlib2tikz/metadata.xml b/dev-python/matplotlib2tikz/metadata.xml index 9c08eac01..9dc28cbe0 100644 --- a/dev-python/matplotlib2tikz/metadata.xml +++ b/dev-python/matplotlib2tikz/metadata.xml @@ -1,4 +1,4 @@ -<?xml version="1.0" encoding="UTF-8"?> +<?xml version='1.0' encoding='UTF-8'?> <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <maintainer type="person"> @@ -12,6 +12,5 @@ <longdescription>matplotlib2tikz is a Python tool for converting matplotlib figures into PGFPlots (TikZ) figures like for native inclusion into LaTeX documents. The output of matplotlib2tikz is in PGFPlots, a LaTeX library that sits on top of TikZ and describes graphs in terms of axes, data etc. Consequently, the output of matplotlib2tikz retains more information, can be more easily understood, and is more easily editable than raw TikZ output.</longdescription> <upstream> <remote-id type="github">nschloe/matplotlib2tikz</remote-id> - <remote-id type="pypi">matplotlib2tikz</remote-id> </upstream> </pkgmetadata> diff --git a/dev-python/matrix2latex/metadata.xml b/dev-python/matrix2latex/metadata.xml index b8ecd8dc9..e8cce6c4b 100644 --- a/dev-python/matrix2latex/metadata.xml +++ b/dev-python/matrix2latex/metadata.xml @@ -1,4 +1,4 @@ -<?xml version="1.0" encoding="UTF-8"?> +<?xml version='1.0' encoding='UTF-8'?> <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <maintainer type="project"> @@ -11,6 +11,6 @@ LATeX documents and compile them. </longdescription> <upstream> - <remote-id type="github">matrix2latex</remote-id> + <remote-id type="github">TheChymera/matrix2latex</remote-id> </upstream> </pkgmetadata> diff --git a/dev-python/meshpy/metadata.xml b/dev-python/meshpy/metadata.xml index d5be6ad0b..18f3e3730 100644 --- a/dev-python/meshpy/metadata.xml +++ b/dev-python/meshpy/metadata.xml @@ -1,4 +1,4 @@ -<?xml version="1.0" encoding="UTF-8"?> +<?xml version='1.0' encoding='UTF-8'?> <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <maintainer type="project"> @@ -12,7 +12,7 @@ also have many other applications ranging from computer graphics to robotics. In order to generate these 2D and 3D meshes, MeshPy provides Python interfaces to two well-regarded mesh generators, Triangle by J. Shewchuk and TetGen by Hang Si. Both are included in the package in slightly modified versions. -</longdescription> + </longdescription> <upstream> <remote-id type="pypi">MeshPy</remote-id> </upstream> diff --git a/dev-python/metakernel/metadata.xml b/dev-python/metakernel/metadata.xml index 98f5e4874..e0c68c929 100644 --- a/dev-python/metakernel/metadata.xml +++ b/dev-python/metakernel/metadata.xml @@ -1,4 +1,4 @@ -<?xml version="1.0" encoding="UTF-8"?> +<?xml version='1.0' encoding='UTF-8'?> <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <maintainer type="project"> @@ -11,7 +11,7 @@ parallel and distributed processing, downloads, and much more). </longdescription> <upstream> - <remote-id type="pypi">metakernel</remote-id> <remote-id type="github">Calysto/metakernel</remote-id> + <remote-id type="pypi">metakernel</remote-id> </upstream> </pkgmetadata> diff --git a/dev-python/metakernel_bash/metadata.xml b/dev-python/metakernel_bash/metadata.xml index 105ab469f..286d590e3 100644 --- a/dev-python/metakernel_bash/metadata.xml +++ b/dev-python/metakernel_bash/metadata.xml @@ -1,4 +1,4 @@ -<?xml version="1.0" encoding="UTF-8"?> +<?xml version='1.0' encoding='UTF-8'?> <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <maintainer type="project"> @@ -9,7 +9,7 @@ A Bash kernel for Jupyter/IPython, based on MetaKernel. </longdescription> <upstream> - <remote-id type="pypi">metakernel_bash</remote-id> <remote-id type="github">Calysto/metakernel</remote-id> + <remote-id type="pypi">metakernel_bash</remote-id> </upstream> </pkgmetadata> diff --git a/dev-python/metakernel_python/metadata.xml b/dev-python/metakernel_python/metadata.xml index 2aed17634..aaf6cb9d7 100644 --- a/dev-python/metakernel_python/metadata.xml +++ b/dev-python/metakernel_python/metadata.xml @@ -1,4 +1,4 @@ -<?xml version="1.0" encoding="UTF-8"?> +<?xml version='1.0' encoding='UTF-8'?> <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <maintainer type="project"> @@ -9,7 +9,7 @@ A Python kernel for Jupyter/IPython, based on MetaKernel. </longdescription> <upstream> - <remote-id type="pypi">metakernel_python</remote-id> <remote-id type="github">Calysto/metakernel</remote-id> + <remote-id type="pypi">metakernel_python</remote-id> </upstream> </pkgmetadata> diff --git a/dev-python/nbconvert/metadata.xml b/dev-python/nbconvert/metadata.xml index 10cd4105e..d9cbf5baa 100644 --- a/dev-python/nbconvert/metadata.xml +++ b/dev-python/nbconvert/metadata.xml @@ -1,4 +1,4 @@ -<?xml version="1.0" encoding="UTF-8"?> +<?xml version='1.0' encoding='UTF-8'?> <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <maintainer type="project"> @@ -9,7 +9,4 @@ Jupyter NBConvert converts Jupyter notebooks to various other formats via Jinja templates. </longdescription> - <upstream> - <remote-id type="pypi">nbconvert</remote-id> - </upstream> </pkgmetadata> diff --git a/dev-python/nbdime/metadata.xml b/dev-python/nbdime/metadata.xml index b2a229dc3..5a8712352 100644 --- a/dev-python/nbdime/metadata.xml +++ b/dev-python/nbdime/metadata.xml @@ -1,4 +1,4 @@ -<?xml version="1.0" encoding="UTF-8"?> +<?xml version='1.0' encoding='UTF-8'?> <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <maintainer type="person"> @@ -12,13 +12,9 @@ <longdescription> nbdime provides tools for diffing and merging of Jupyter Notebooks. </longdescription> - <upstream> - <remote-id type="github">jupyter/nbdime</remote-id> - <remote-id type="pypi">nbdime</remote-id> - </upstream> <use> <flag name="webtools"> Install web-based diff and merge tools. </flag> -</use> + </use> </pkgmetadata> diff --git a/dev-python/nbformat/metadata.xml b/dev-python/nbformat/metadata.xml index 6bd91dea5..4788ba53f 100644 --- a/dev-python/nbformat/metadata.xml +++ b/dev-python/nbformat/metadata.xml @@ -1,4 +1,4 @@ -<?xml version="1.0" encoding="UTF-8"?> +<?xml version='1.0' encoding='UTF-8'?> <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <maintainer type="project"> @@ -11,7 +11,4 @@ notebooks. There is also a JSON schema for notebook format versions >= 3. </longdescription> - <upstream> - <remote-id type="pypi">nbformat</remote-id> - </upstream> </pkgmetadata> diff --git a/dev-python/newrelic/metadata.xml b/dev-python/newrelic/metadata.xml index 442e04047..4a7c9adc5 100644 --- a/dev-python/newrelic/metadata.xml +++ b/dev-python/newrelic/metadata.xml @@ -1,4 +1,4 @@ -<?xml version="1.0" encoding="UTF-8"?> +<?xml version='1.0' encoding='UTF-8'?> <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <maintainer type="project"> diff --git a/dev-python/notebook/metadata.xml b/dev-python/notebook/metadata.xml index 2751ca0be..8161170dc 100644 --- a/dev-python/notebook/metadata.xml +++ b/dev-python/notebook/metadata.xml @@ -1,4 +1,4 @@ -<?xml version="1.0" encoding="UTF-8"?> +<?xml version='1.0' encoding='UTF-8'?> <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <maintainer type="project"> diff --git a/dev-python/nvidia-ml-py/metadata.xml b/dev-python/nvidia-ml-py/metadata.xml index 5e6d9d85c..e18e888d9 100644 --- a/dev-python/nvidia-ml-py/metadata.xml +++ b/dev-python/nvidia-ml-py/metadata.xml @@ -1,4 +1,4 @@ -<?xml version="1.0" encoding="UTF-8"?> +<?xml version='1.0' encoding='UTF-8'?> <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <maintainer type="person"> diff --git a/dev-python/omniorbpy/metadata.xml b/dev-python/omniorbpy/metadata.xml index f3506b413..d47182280 100644 --- a/dev-python/omniorbpy/metadata.xml +++ b/dev-python/omniorbpy/metadata.xml @@ -1,4 +1,4 @@ -<?xml version="1.0" encoding="UTF-8"?> +<?xml version='1.0' encoding='UTF-8'?> <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <maintainer type="project"> diff --git a/dev-python/opal-client/metadata.xml b/dev-python/opal-client/metadata.xml index 28e2fc558..7aac60648 100644 --- a/dev-python/opal-client/metadata.xml +++ b/dev-python/opal-client/metadata.xml @@ -1,4 +1,4 @@ -<?xml version="1.0" encoding="UTF-8"?> +<?xml version='1.0' encoding='UTF-8'?> <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <maintainer type="project"> diff --git a/dev-python/pamela/metadata.xml b/dev-python/pamela/metadata.xml index d1dc0c28b..e55257c75 100644 --- a/dev-python/pamela/metadata.xml +++ b/dev-python/pamela/metadata.xml @@ -1,4 +1,4 @@ -<?xml version="1.0" encoding="UTF-8"?> +<?xml version='1.0' encoding='UTF-8'?> <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <maintainer type="project"> @@ -10,7 +10,7 @@ written in pure Python (using ctypes). </longdescription> <upstream> - <remote-id type="pypi">pamela</remote-id> <remote-id type="github">minrk/pamela</remote-id> + <remote-id type="pypi">pamela</remote-id> </upstream> </pkgmetadata> diff --git a/dev-python/photutils/metadata.xml b/dev-python/photutils/metadata.xml index b5ab4d774..00ee2183b 100644 --- a/dev-python/photutils/metadata.xml +++ b/dev-python/photutils/metadata.xml @@ -1,4 +1,4 @@ -<?xml version="1.0" encoding="UTF-8"?> +<?xml version='1.0' encoding='UTF-8'?> <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <maintainer type="project"> @@ -11,7 +11,6 @@ centroid and shape parameters, and performing photometry. </longdescription> <upstream> - <remote-id type="pypi">photutils</remote-id> <remote-id type="github">astropy/photutils</remote-id> </upstream> </pkgmetadata> diff --git a/dev-python/pickleshare/metadata.xml b/dev-python/pickleshare/metadata.xml index 5d8abb4a3..967d08889 100644 --- a/dev-python/pickleshare/metadata.xml +++ b/dev-python/pickleshare/metadata.xml @@ -1,4 +1,4 @@ -<?xml version="1.0" encoding="UTF-8"?> +<?xml version='1.0' encoding='UTF-8'?> <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <maintainer type="project"> @@ -15,7 +15,6 @@ governed by PickleShare. </longdescription> <upstream> - <remote-id type="pypi">pickleshare</remote-id> <remote-id type="github">pickleshare/pickleshare</remote-id> </upstream> </pkgmetadata> diff --git a/dev-python/prettyplotlib/metadata.xml b/dev-python/prettyplotlib/metadata.xml index 752a7a1ad..615f1b6db 100644 --- a/dev-python/prettyplotlib/metadata.xml +++ b/dev-python/prettyplotlib/metadata.xml @@ -1,4 +1,4 @@ -<?xml version="1.0" encoding="UTF-8"?> +<?xml version='1.0' encoding='UTF-8'?> <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <maintainer type="person"> @@ -7,7 +7,7 @@ </maintainer> <longdescription> Python matplotlib-enhancer library which painlessly creates - beautiful default matplotlib plots. + beautiful default matplotlib plots. </longdescription> <upstream> <remote-id type="pypi">prettyplotlib</remote-id> diff --git a/dev-python/prov/metadata.xml b/dev-python/prov/metadata.xml index df7ac6500..1b4b150fb 100644 --- a/dev-python/prov/metadata.xml +++ b/dev-python/prov/metadata.xml @@ -1,4 +1,4 @@ -<?xml version="1.0" encoding="UTF-8"?> +<?xml version='1.0' encoding='UTF-8'?> <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <maintainer type="person"> diff --git a/dev-python/ptyprocess/metadata.xml b/dev-python/ptyprocess/metadata.xml index 3ff841fbb..ea8694355 100644 --- a/dev-python/ptyprocess/metadata.xml +++ b/dev-python/ptyprocess/metadata.xml @@ -1,4 +1,4 @@ -<?xml version="1.0" encoding="UTF-8"?> +<?xml version='1.0' encoding='UTF-8'?> <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <maintainer type="project"> diff --git a/dev-python/pydotplus/metadata.xml b/dev-python/pydotplus/metadata.xml index 3e56e273a..eb80ef0cd 100644 --- a/dev-python/pydotplus/metadata.xml +++ b/dev-python/pydotplus/metadata.xml @@ -1,4 +1,4 @@ -<?xml version="1.0" encoding="UTF-8"?> +<?xml version='1.0' encoding='UTF-8'?> <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <maintainer type="person"> diff --git a/dev-python/pyfftw/metadata.xml b/dev-python/pyfftw/metadata.xml index 039274847..174e4dbdc 100644 --- a/dev-python/pyfftw/metadata.xml +++ b/dev-python/pyfftw/metadata.xml @@ -1,4 +1,4 @@ -<?xml version="1.0" encoding="UTF-8"?> +<?xml version='1.0' encoding='UTF-8'?> <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <maintainer type="person"> diff --git a/dev-python/pyhdf/metadata.xml b/dev-python/pyhdf/metadata.xml index bc7e4eaea..d38ca85ff 100644 --- a/dev-python/pyhdf/metadata.xml +++ b/dev-python/pyhdf/metadata.xml @@ -1,4 +1,4 @@ -<?xml version="1.0" encoding="UTF-8"?> +<?xml version='1.0' encoding='UTF-8'?> <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <maintainer type="person"> diff --git a/dev-python/pylibconfig2/metadata.xml b/dev-python/pylibconfig2/metadata.xml index ddcf65796..e260b7fe1 100644 --- a/dev-python/pylibconfig2/metadata.xml +++ b/dev-python/pylibconfig2/metadata.xml @@ -1,4 +1,4 @@ -<?xml version="1.0" encoding="UTF-8"?> +<?xml version='1.0' encoding='UTF-8'?> <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <maintainer type="person"> @@ -19,7 +19,7 @@ only, and represented as a string automatically. </longdescription> <upstream> - <remote-id type="pypi">pylibconfig2</remote-id> <remote-id type="github">heinzK1X/pylibconfig2</remote-id> + <remote-id type="pypi">pylibconfig2</remote-id> </upstream> </pkgmetadata> diff --git a/dev-python/pynomo/metadata.xml b/dev-python/pynomo/metadata.xml index 0ece82028..f365ddf66 100644 --- a/dev-python/pynomo/metadata.xml +++ b/dev-python/pynomo/metadata.xml @@ -1,4 +1,4 @@ -<?xml version="1.0" encoding="UTF-8"?> +<?xml version='1.0' encoding='UTF-8'?> <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <maintainer type="person"> @@ -8,7 +8,7 @@ Pynomo is a program to create (pdf) nomographs (nomograms) using Python interpreter. A nomograph (nomogram) is a graphical solution to an equation. -</longdescription> + </longdescription> <upstream> <remote-id type="sourceforge">pynomo</remote-id> </upstream> diff --git a/dev-python/pysolar/metadata.xml b/dev-python/pysolar/metadata.xml index a7996892d..fe8be1b12 100644 --- a/dev-python/pysolar/metadata.xml +++ b/dev-python/pysolar/metadata.xml @@ -1,4 +1,4 @@ -<?xml version="1.0" encoding="UTF-8"?> +<?xml version='1.0' encoding='UTF-8'?> <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <maintainer type="project"> @@ -11,9 +11,8 @@ extremely precise ephemeris calculations, and more. Pysolar can calculate the location of the sun or the shading percentage as a function of time for a row of 2-axis tracked panels. -</longdescription> + </longdescription> <upstream> - <remote-id type="pypi">Pysolar</remote-id> <remote-id type="github">pingswept/pysolar</remote-id> </upstream> </pkgmetadata> diff --git a/dev-python/python-ivi/metadata.xml b/dev-python/python-ivi/metadata.xml index 9d59c0382..630240a1d 100644 --- a/dev-python/python-ivi/metadata.xml +++ b/dev-python/python-ivi/metadata.xml @@ -1,4 +1,4 @@ -<?xml version="1.0" encoding="UTF-8"?> +<?xml version='1.0' encoding='UTF-8'?> <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <maintainer type="person"> diff --git a/dev-python/python-vxi11/metadata.xml b/dev-python/python-vxi11/metadata.xml index 095fd5346..72510adc7 100644 --- a/dev-python/python-vxi11/metadata.xml +++ b/dev-python/python-vxi11/metadata.xml @@ -1,4 +1,4 @@ -<?xml version="1.0" encoding="UTF-8"?> +<?xml version='1.0' encoding='UTF-8'?> <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <maintainer type="person"> diff --git a/dev-python/pythoncgns/metadata.xml b/dev-python/pythoncgns/metadata.xml index 116c8c0b3..35f35f0b7 100644 --- a/dev-python/pythoncgns/metadata.xml +++ b/dev-python/pythoncgns/metadata.xml @@ -1,4 +1,4 @@ -<?xml version="1.0" encoding="UTF-8"?> +<?xml version='1.0' encoding='UTF-8'?> <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <maintainer type="project"> diff --git a/dev-python/pythonqt/metadata.xml b/dev-python/pythonqt/metadata.xml index e44f1d0fe..364efbdc3 100644 --- a/dev-python/pythonqt/metadata.xml +++ b/dev-python/pythonqt/metadata.xml @@ -1,4 +1,4 @@ -<?xml version="1.0" encoding="UTF-8"?> +<?xml version='1.0' encoding='UTF-8'?> <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <maintainer type="project"> diff --git a/dev-python/qtconsole/metadata.xml b/dev-python/qtconsole/metadata.xml index 83b712f7e..93199c605 100644 --- a/dev-python/qtconsole/metadata.xml +++ b/dev-python/qtconsole/metadata.xml @@ -1,4 +1,4 @@ -<?xml version="1.0" encoding="UTF-8"?> +<?xml version='1.0' encoding='UTF-8'?> <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <maintainer type="project"> @@ -9,7 +9,4 @@ A rich Qt-based console for working with Jupyter kernels, supporting rich media output, session export, and more. </longdescription> - <upstream> - <remote-id type="pypi">qtconsole</remote-id> - </upstream> </pkgmetadata> diff --git a/dev-python/snakemake/metadata.xml b/dev-python/snakemake/metadata.xml index 9fb8f07d6..a21e3edfd 100644 --- a/dev-python/snakemake/metadata.xml +++ b/dev-python/snakemake/metadata.xml @@ -10,7 +10,6 @@ <name>Python</name> </maintainer> <upstream> - <remote-id type="github">dev-python/snakemake</remote-id> <remote-id type="bitbucket">johanneskoester/snakemake</remote-id> <remote-id type="pypi">snakemake</remote-id> </upstream> diff --git a/dev-python/specutils/metadata.xml b/dev-python/specutils/metadata.xml index 15cc63844..6e70cb363 100644 --- a/dev-python/specutils/metadata.xml +++ b/dev-python/specutils/metadata.xml @@ -1,4 +1,4 @@ -<?xml version="1.0" encoding="UTF-8"?> +<?xml version='1.0' encoding='UTF-8'?> <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <maintainer type="project"> @@ -11,7 +11,6 @@ into a class with special handling of 1D spectra. </longdescription> <upstream> - <remote-id type="pypi">specutils</remote-id> <remote-id type="github">astropy/specutils</remote-id> </upstream> </pkgmetadata> diff --git a/dev-python/symengine/metadata.xml b/dev-python/symengine/metadata.xml index 00019a052..ffc78518d 100644 --- a/dev-python/symengine/metadata.xml +++ b/dev-python/symengine/metadata.xml @@ -1,4 +1,4 @@ -<?xml version="1.0" encoding="UTF-8"?> +<?xml version='1.0' encoding='UTF-8'?> <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <maintainer type="person"> diff --git a/dev-python/testpath/metadata.xml b/dev-python/testpath/metadata.xml index cba9cbf64..7183f762d 100644 --- a/dev-python/testpath/metadata.xml +++ b/dev-python/testpath/metadata.xml @@ -1,4 +1,4 @@ -<?xml version="1.0" encoding="UTF-8"?> +<?xml version='1.0' encoding='UTF-8'?> <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <maintainer type="project"> @@ -11,7 +11,4 @@ filesystem, and tools for mocking system commands and recording calls to those. </longdescription> - <upstream> - <remote-id type="github">jupyter/testpath</remote-id> - </upstream> </pkgmetadata> diff --git a/dev-python/traitlets/metadata.xml b/dev-python/traitlets/metadata.xml index fa50e6184..a1cab5d48 100644 --- a/dev-python/traitlets/metadata.xml +++ b/dev-python/traitlets/metadata.xml @@ -1,4 +1,4 @@ -<?xml version="1.0" encoding="UTF-8"?> +<?xml version='1.0' encoding='UTF-8'?> <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <maintainer type="project"> @@ -11,7 +11,6 @@ the config system of IPython and Jupyter. </longdescription> <upstream> - <remote-id type="pypi">traitlets</remote-id> <remote-id type="github">ipython/traitlets</remote-id> </upstream> </pkgmetadata> diff --git a/dev-python/ufl/metadata.xml b/dev-python/ufl/metadata.xml index af0327cec..480a531aa 100644 --- a/dev-python/ufl/metadata.xml +++ b/dev-python/ufl/metadata.xml @@ -1,4 +1,4 @@ -<?xml version="1.0" encoding="UTF-8"?> +<?xml version='1.0' encoding='UTF-8'?> <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <maintainer type="project"> @@ -14,6 +14,5 @@ </longdescription> <upstream> <remote-id type="bitbucket">fenics-project/ufl</remote-id> - <remote-id type="launchpad">ufl</remote-id> </upstream> </pkgmetadata> diff --git a/dev-python/viper/metadata.xml b/dev-python/viper/metadata.xml index 430a78511..18c1efff5 100644 --- a/dev-python/viper/metadata.xml +++ b/dev-python/viper/metadata.xml @@ -1,4 +1,4 @@ -<?xml version="1.0" encoding="UTF-8"?> +<?xml version='1.0' encoding='UTF-8'?> <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <maintainer type="project"> diff --git a/dev-python/widgetsnbextension/metadata.xml b/dev-python/widgetsnbextension/metadata.xml index 9f0544f5e..56daebe56 100644 --- a/dev-python/widgetsnbextension/metadata.xml +++ b/dev-python/widgetsnbextension/metadata.xml @@ -1,4 +1,4 @@ -<?xml version="1.0" encoding="UTF-8"?> +<?xml version='1.0' encoding='UTF-8'?> <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <maintainer type="project"> @@ -10,6 +10,5 @@ </longdescription> <upstream> <remote-id type="pypi">widgetsnbextension</remote-id> - <remote-id type="github">ipython/ipywidgets</remote-id> </upstream> </pkgmetadata> diff --git a/dev-tcltk/img_rotate/metadata.xml b/dev-tcltk/img_rotate/metadata.xml index f1310b451..2cb3f2bf3 100644 --- a/dev-tcltk/img_rotate/metadata.xml +++ b/dev-tcltk/img_rotate/metadata.xml @@ -1,4 +1,4 @@ -<?xml version="1.0" encoding="UTF-8"?> +<?xml version='1.0' encoding='UTF-8'?> <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <maintainer type="project"> diff --git a/dev-tcltk/togl/metadata.xml b/dev-tcltk/togl/metadata.xml index d19c9b2f3..9499d8d89 100644 --- a/dev-tcltk/togl/metadata.xml +++ b/dev-tcltk/togl/metadata.xml @@ -1,4 +1,4 @@ -<?xml version="1.0" encoding="UTF-8"?> +<?xml version='1.0' encoding='UTF-8'?> <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <maintainer type="project"> diff --git a/dev-tex/pythontex/metadata.xml b/dev-tex/pythontex/metadata.xml index 17dc4a877..dc4de7cb4 100644 --- a/dev-tex/pythontex/metadata.xml +++ b/dev-tex/pythontex/metadata.xml @@ -1,4 +1,4 @@ -<?xml version="1.0" encoding="UTF-8"?> +<?xml version='1.0' encoding='UTF-8'?> <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <maintainer type="project"> diff --git a/media-gfx/brlcad/metadata.xml b/media-gfx/brlcad/metadata.xml index fd0913372..a5755a70a 100644 --- a/media-gfx/brlcad/metadata.xml +++ b/media-gfx/brlcad/metadata.xml @@ -1,4 +1,4 @@ -<?xml version="1.0" encoding="UTF-8"?> +<?xml version='1.0' encoding='UTF-8'?> <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <maintainer type="person"> diff --git a/media-gfx/librecad/metadata.xml b/media-gfx/librecad/metadata.xml index 56059e49f..83d16d787 100644 --- a/media-gfx/librecad/metadata.xml +++ b/media-gfx/librecad/metadata.xml @@ -1,4 +1,4 @@ -<?xml version="1.0" encoding="UTF-8"?> +<?xml version='1.0' encoding='UTF-8'?> <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <maintainer type="person"> diff --git a/media-libs/glbinding/metadata.xml b/media-libs/glbinding/metadata.xml index 4d6a1c0ac..5f82e29cb 100644 --- a/media-libs/glbinding/metadata.xml +++ b/media-libs/glbinding/metadata.xml @@ -1,4 +1,4 @@ -<?xml version="1.0" encoding="UTF-8"?> +<?xml version='1.0' encoding='UTF-8'?> <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <maintainer type="person"> diff --git a/sci-astronomy/libthesky/metadata.xml b/sci-astronomy/libthesky/metadata.xml index 03ad4b5fd..374f32bf7 100644 --- a/sci-astronomy/libthesky/metadata.xml +++ b/sci-astronomy/libthesky/metadata.xml @@ -1,4 +1,4 @@ -<?xml version="1.0" encoding="UTF-8"?> +<?xml version='1.0' encoding='UTF-8'?> <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <maintainer type="person"> diff --git a/sci-astronomy/mosstack/metadata.xml b/sci-astronomy/mosstack/metadata.xml index c8bd774a7..df5606cca 100644 --- a/sci-astronomy/mosstack/metadata.xml +++ b/sci-astronomy/mosstack/metadata.xml @@ -1,4 +1,4 @@ -<?xml version="1.0" encoding="UTF-8"?> +<?xml version='1.0' encoding='UTF-8'?> <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <maintainer type="person"> diff --git a/sci-biology/AlignGraph/metadata.xml b/sci-biology/AlignGraph/metadata.xml index f060cdca7..7863f973a 100644 --- a/sci-biology/AlignGraph/metadata.xml +++ b/sci-biology/AlignGraph/metadata.xml @@ -1,4 +1,4 @@ -<?xml version="1.0" encoding="UTF-8"?> +<?xml version='1.0' encoding='UTF-8'?> <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <maintainer type="person"> diff --git a/sci-biology/Atlas2/metadata.xml b/sci-biology/Atlas2/metadata.xml index 3ff6ceef1..4338746db 100644 --- a/sci-biology/Atlas2/metadata.xml +++ b/sci-biology/Atlas2/metadata.xml @@ -1,4 +1,4 @@ -<?xml version="1.0" encoding="UTF-8"?> +<?xml version='1.0' encoding='UTF-8'?> <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <maintainer type="person"> @@ -13,7 +13,7 @@ Atlas2 is a next-generation sequencing suite of variant analysis tools specializing in the separation of true SNPs and insertions and deletions (indels) from sequencing and mapping errors in Whole - Exome Capture Sequencing (WECS) data. + Exome Capture Sequencing (WECS) data. </longdescription> <upstream> <remote-id type="sourceforge">downloads</remote-id> diff --git a/sci-biology/BBmap/metadata.xml b/sci-biology/BBmap/metadata.xml index 40ba306f4..75990319d 100644 --- a/sci-biology/BBmap/metadata.xml +++ b/sci-biology/BBmap/metadata.xml @@ -1,4 +1,4 @@ -<?xml version="1.0" encoding="UTF-8"?> +<?xml version='1.0' encoding='UTF-8'?> <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <maintainer type="person"> diff --git a/sci-biology/BRANCH/metadata.xml b/sci-biology/BRANCH/metadata.xml index e6ac3bb3f..ab90aa364 100644 --- a/sci-biology/BRANCH/metadata.xml +++ b/sci-biology/BRANCH/metadata.xml @@ -1,4 +1,4 @@ -<?xml version="1.0" encoding="UTF-8"?> +<?xml version='1.0' encoding='UTF-8'?> <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <maintainer type="person"> diff --git a/sci-biology/BamView/metadata.xml b/sci-biology/BamView/metadata.xml index e25129704..ecc16433b 100644 --- a/sci-biology/BamView/metadata.xml +++ b/sci-biology/BamView/metadata.xml @@ -1,4 +1,4 @@ -<?xml version="1.0" encoding="UTF-8"?> +<?xml version='1.0' encoding='UTF-8'?> <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <maintainer type="person"> diff --git a/sci-biology/BlastToSam/metadata.xml b/sci-biology/BlastToSam/metadata.xml index 9885a3a72..86bbb3764 100644 --- a/sci-biology/BlastToSam/metadata.xml +++ b/sci-biology/BlastToSam/metadata.xml @@ -1,4 +1,4 @@ -<?xml version="1.0" encoding="UTF-8"?> +<?xml version='1.0' encoding='UTF-8'?> <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <maintainer type="person"> diff --git a/sci-biology/EBARDenovo/metadata.xml b/sci-biology/EBARDenovo/metadata.xml index 3aa5ff5d7..d0f646374 100644 --- a/sci-biology/EBARDenovo/metadata.xml +++ b/sci-biology/EBARDenovo/metadata.xml @@ -1,4 +1,4 @@ -<?xml version="1.0" encoding="UTF-8"?> +<?xml version='1.0' encoding='UTF-8'?> <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <maintainer type="person"> @@ -10,6 +10,6 @@ <name>Gentoo Biology Project</name> </maintainer> <upstream> - <remote-id type="sourceforge">ebardenovo</remote-id> + <remote-id type="sourceforge">downloads</remote-id> </upstream> </pkgmetadata> diff --git a/sci-biology/FLASH/metadata.xml b/sci-biology/FLASH/metadata.xml index bb87910ab..d0f646374 100644 --- a/sci-biology/FLASH/metadata.xml +++ b/sci-biology/FLASH/metadata.xml @@ -1,4 +1,4 @@ -<?xml version="1.0" encoding="UTF-8"?> +<?xml version='1.0' encoding='UTF-8'?> <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <maintainer type="person"> @@ -10,6 +10,6 @@ <name>Gentoo Biology Project</name> </maintainer> <upstream> - <remote-id type="sourceforge">flashpage</remote-id> + <remote-id type="sourceforge">downloads</remote-id> </upstream> </pkgmetadata> diff --git a/sci-biology/HTSeq/metadata.xml b/sci-biology/HTSeq/metadata.xml index a51edc8ae..b08ab454b 100644 --- a/sci-biology/HTSeq/metadata.xml +++ b/sci-biology/HTSeq/metadata.xml @@ -1,4 +1,4 @@ -<?xml version="1.0" encoding="UTF-8"?> +<?xml version='1.0' encoding='UTF-8'?> <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <maintainer type="person"> diff --git a/sci-biology/IMAGE/metadata.xml b/sci-biology/IMAGE/metadata.xml index 6d3e53e2e..3dcd782d1 100644 --- a/sci-biology/IMAGE/metadata.xml +++ b/sci-biology/IMAGE/metadata.xml @@ -1,4 +1,4 @@ -<?xml version="1.0" encoding="UTF-8"?> +<?xml version='1.0' encoding='UTF-8'?> <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <maintainer type="person"> diff --git a/sci-biology/InterMine/metadata.xml b/sci-biology/InterMine/metadata.xml index 5ac633a2e..5c9c50b32 100644 --- a/sci-biology/InterMine/metadata.xml +++ b/sci-biology/InterMine/metadata.xml @@ -1,4 +1,4 @@ -<?xml version="1.0" encoding="UTF-8"?> +<?xml version='1.0' encoding='UTF-8'?> <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <maintainer type="person"> diff --git a/sci-biology/MeV/metadata.xml b/sci-biology/MeV/metadata.xml index ef6150af4..6ed96d4bc 100644 --- a/sci-biology/MeV/metadata.xml +++ b/sci-biology/MeV/metadata.xml @@ -1,4 +1,4 @@ -<?xml version="1.0" encoding="UTF-8"?> +<?xml version='1.0' encoding='UTF-8'?> <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <maintainer type="person"> @@ -9,6 +9,6 @@ <name>Gentoo Biology Project</name> </maintainer> <upstream> - <remote-id type="sourceforge">mev-tm4</remote-id> + <remote-id type="sourceforge">downloads</remote-id> </upstream> </pkgmetadata> diff --git a/sci-biology/NGSTools/metadata.xml b/sci-biology/NGSTools/metadata.xml index 7361e7654..fe6859dd7 100644 --- a/sci-biology/NGSTools/metadata.xml +++ b/sci-biology/NGSTools/metadata.xml @@ -1,4 +1,4 @@ -<?xml version="1.0" encoding="UTF-8"?> +<?xml version='1.0' encoding='UTF-8'?> <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <maintainer type="person"> diff --git a/sci-biology/OBO-Edit/metadata.xml b/sci-biology/OBO-Edit/metadata.xml index acbbc35a4..115a34c41 100644 --- a/sci-biology/OBO-Edit/metadata.xml +++ b/sci-biology/OBO-Edit/metadata.xml @@ -1,4 +1,4 @@ -<?xml version="1.0" encoding="UTF-8"?> +<?xml version='1.0' encoding='UTF-8'?> <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <maintainer type="person"> diff --git a/sci-biology/RSeQC/metadata.xml b/sci-biology/RSeQC/metadata.xml index 0452b2835..54bdfb597 100644 --- a/sci-biology/RSeQC/metadata.xml +++ b/sci-biology/RSeQC/metadata.xml @@ -1,4 +1,4 @@ -<?xml version="1.0" encoding="UTF-8"?> +<?xml version='1.0' encoding='UTF-8'?> <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <maintainer type="person"> diff --git a/sci-biology/Ray/metadata.xml b/sci-biology/Ray/metadata.xml index 982286fb0..fb7092ff7 100644 --- a/sci-biology/Ray/metadata.xml +++ b/sci-biology/Ray/metadata.xml @@ -1,4 +1,4 @@ -<?xml version="1.0" encoding="UTF-8"?> +<?xml version='1.0' encoding='UTF-8'?> <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <maintainer type="person"> diff --git a/sci-biology/STAR/metadata.xml b/sci-biology/STAR/metadata.xml index 68af3388c..f053775b5 100644 --- a/sci-biology/STAR/metadata.xml +++ b/sci-biology/STAR/metadata.xml @@ -1,4 +1,4 @@ -<?xml version="1.0" encoding="UTF-8"?> +<?xml version='1.0' encoding='UTF-8'?> <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <maintainer type="person"> diff --git a/sci-biology/SolexaQA/metadata.xml b/sci-biology/SolexaQA/metadata.xml index c9f605e75..f7714240a 100644 --- a/sci-biology/SolexaQA/metadata.xml +++ b/sci-biology/SolexaQA/metadata.xml @@ -1,4 +1,4 @@ -<?xml version="1.0" encoding="UTF-8"?> +<?xml version='1.0' encoding='UTF-8'?> <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <maintainer type="person"> @@ -10,6 +10,6 @@ <name>Gentoo Biology Project</name> </maintainer> <upstream> - <remote-id type="sourceforge">clview</remote-id> + <remote-id type="sourceforge">solexaqa</remote-id> </upstream> </pkgmetadata> diff --git a/sci-biology/TransDecoder/metadata.xml b/sci-biology/TransDecoder/metadata.xml index 42a56a27e..1a522bbe1 100644 --- a/sci-biology/TransDecoder/metadata.xml +++ b/sci-biology/TransDecoder/metadata.xml @@ -1,4 +1,4 @@ -<?xml version="1.0" encoding="UTF-8"?> +<?xml version='1.0' encoding='UTF-8'?> <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <maintainer type="person"> @@ -11,6 +11,5 @@ </maintainer> <upstream> <remote-id type="github">TransDecoder/TransDecoder</remote-id> - <remote-id type="sourceforge">transdecoder</remote-id> </upstream> </pkgmetadata> diff --git a/sci-biology/Trinotate/metadata.xml b/sci-biology/Trinotate/metadata.xml index f409887af..b183ac8ee 100644 --- a/sci-biology/Trinotate/metadata.xml +++ b/sci-biology/Trinotate/metadata.xml @@ -1,4 +1,4 @@ -<?xml version="1.0" encoding="UTF-8"?> +<?xml version='1.0' encoding='UTF-8'?> <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <maintainer type="person"> diff --git a/sci-biology/VarScan-bin/metadata.xml b/sci-biology/VarScan-bin/metadata.xml index e27dba2e9..01850f614 100644 --- a/sci-biology/VarScan-bin/metadata.xml +++ b/sci-biology/VarScan-bin/metadata.xml @@ -6,7 +6,6 @@ <name>Gentoo Science Project</name> </maintainer> <upstream> - <remote-id type="sourceforge">varscan</remote-id> <remote-id type="github">dkoboldt/varscan</remote-id> </upstream> </pkgmetadata> diff --git a/sci-biology/VarScan/metadata.xml b/sci-biology/VarScan/metadata.xml index e27dba2e9..c9cbb67e6 100644 --- a/sci-biology/VarScan/metadata.xml +++ b/sci-biology/VarScan/metadata.xml @@ -6,7 +6,7 @@ <name>Gentoo Science Project</name> </maintainer> <upstream> - <remote-id type="sourceforge">varscan</remote-id> <remote-id type="github">dkoboldt/varscan</remote-id> + <remote-id type="sourceforge">varscan</remote-id> </upstream> </pkgmetadata> diff --git a/sci-biology/abacas/metadata.xml b/sci-biology/abacas/metadata.xml index c458ee97f..d0f646374 100644 --- a/sci-biology/abacas/metadata.xml +++ b/sci-biology/abacas/metadata.xml @@ -1,4 +1,4 @@ -<?xml version="1.0" encoding="UTF-8"?> +<?xml version='1.0' encoding='UTF-8'?> <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <maintainer type="person"> @@ -10,6 +10,6 @@ <name>Gentoo Biology Project</name> </maintainer> <upstream> - <remote-id type="sourceforge">abacas</remote-id> + <remote-id type="sourceforge">downloads</remote-id> </upstream> </pkgmetadata> diff --git a/sci-biology/amos/metadata.xml b/sci-biology/amos/metadata.xml index d8574e5f0..5b2ca1a74 100644 --- a/sci-biology/amos/metadata.xml +++ b/sci-biology/amos/metadata.xml @@ -1,4 +1,4 @@ -<?xml version="1.0" encoding="UTF-8"?> +<?xml version='1.0' encoding='UTF-8'?> <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <maintainer type="person"> diff --git a/sci-biology/bambus/metadata.xml b/sci-biology/bambus/metadata.xml index 4736dbff7..1054fc1ed 100644 --- a/sci-biology/bambus/metadata.xml +++ b/sci-biology/bambus/metadata.xml @@ -1,4 +1,4 @@ -<?xml version="1.0" encoding="UTF-8"?> +<?xml version='1.0' encoding='UTF-8'?> <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <maintainer type="person"> @@ -11,6 +11,6 @@ </maintainer> <longdescription>Bambus is the first general purpose scaffolder that is publicly available as an open source package. While most other scaffolders are closely tied to a specific assembly program, Bambus accepts the output from most current assemblers and provides the user with great flexibility in choosing the scaffolding parameters. In particular, Bambus is able to accept contig linking data other than specified by mate-pairs. Such sources of information include alignment to a reference genome (Bambus can directly use the output of MUMmer), physical mapping data, or information about gene synteny.</longdescription> <upstream> - <remote-id type="sourceforge">amos</remote-id> + <remote-id type="sourceforge">mira-assembler</remote-id> </upstream> </pkgmetadata> diff --git a/sci-biology/bamtools/metadata.xml b/sci-biology/bamtools/metadata.xml index fb098c773..7f0271ab3 100644 --- a/sci-biology/bamtools/metadata.xml +++ b/sci-biology/bamtools/metadata.xml @@ -1,4 +1,4 @@ -<?xml version="1.0" encoding="UTF-8"?> +<?xml version='1.0' encoding='UTF-8'?> <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <maintainer type="person"> diff --git a/sci-biology/bcftools/metadata.xml b/sci-biology/bcftools/metadata.xml index 74c17a114..d65c87aa3 100644 --- a/sci-biology/bcftools/metadata.xml +++ b/sci-biology/bcftools/metadata.xml @@ -1,4 +1,4 @@ -<?xml version="1.0" encoding="UTF-8"?> +<?xml version='1.0' encoding='UTF-8'?> <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <maintainer type="person"> diff --git a/sci-biology/biobambam/metadata.xml b/sci-biology/biobambam/metadata.xml index a3e55a407..38f3b45cf 100644 --- a/sci-biology/biobambam/metadata.xml +++ b/sci-biology/biobambam/metadata.xml @@ -1,4 +1,4 @@ -<?xml version="1.0" encoding="UTF-8"?> +<?xml version='1.0' encoding='UTF-8'?> <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <maintainer type="project"> @@ -14,7 +14,7 @@ bammaskflags: reads BAM and writes BAM while masking (removing) bits from the fl bamrecompress: reads BAM and writes BAM with a defined compression setting. This tool is capable of multi-threading. bamsort: reads BAM and writes BAM resorted by coordinates or query name bamtofastq: reads BAM and writes FastQ; output can be collated or uncollated by query name -</longdescription> + </longdescription> <upstream> <remote-id type="github">gt1/biobambam</remote-id> </upstream> diff --git a/sci-biology/biobambam2/metadata.xml b/sci-biology/biobambam2/metadata.xml index a3e55a407..cb036d969 100644 --- a/sci-biology/biobambam2/metadata.xml +++ b/sci-biology/biobambam2/metadata.xml @@ -1,4 +1,4 @@ -<?xml version="1.0" encoding="UTF-8"?> +<?xml version='1.0' encoding='UTF-8'?> <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <maintainer type="project"> @@ -14,8 +14,8 @@ bammaskflags: reads BAM and writes BAM while masking (removing) bits from the fl bamrecompress: reads BAM and writes BAM with a defined compression setting. This tool is capable of multi-threading. bamsort: reads BAM and writes BAM resorted by coordinates or query name bamtofastq: reads BAM and writes FastQ; output can be collated or uncollated by query name -</longdescription> + </longdescription> <upstream> - <remote-id type="github">gt1/biobambam</remote-id> + <remote-id type="github">gt1/biobambam2</remote-id> </upstream> </pkgmetadata> diff --git a/sci-biology/bru2nii/metadata.xml b/sci-biology/bru2nii/metadata.xml index 0cec33715..90ef9367d 100644 --- a/sci-biology/bru2nii/metadata.xml +++ b/sci-biology/bru2nii/metadata.xml @@ -1,4 +1,4 @@ -<?xml version="1.0" encoding="UTF-8"?> +<?xml version='1.0' encoding='UTF-8'?> <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <maintainer type="project"> @@ -8,7 +8,7 @@ <longdescription lang="en"> This is a simple tool for converting Bruker ParaVision MRI data to the NIfTI file format. It includes both a drag-and-drop graphical - interface (Bru2Nii) as well as a command line tool (Bru2). + interface (Bru2Nii) as well as a command line tool (Bru2). </longdescription> <upstream> <remote-id type="github">neurolabusc/Bru2Nii</remote-id> diff --git a/sci-biology/bx-python/metadata.xml b/sci-biology/bx-python/metadata.xml index 0a7390bf1..8cdea5d5a 100644 --- a/sci-biology/bx-python/metadata.xml +++ b/sci-biology/bx-python/metadata.xml @@ -1,4 +1,4 @@ -<?xml version="1.0" encoding="UTF-8"?> +<?xml version='1.0' encoding='UTF-8'?> <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <maintainer type="person"> @@ -10,7 +10,7 @@ <name>Gentoo Biology Project</name> </maintainer> <upstream> - <remote-id type="pypi">bx-python</remote-id> <remote-id type="bitbucket">james_taylor/bx-python</remote-id> + <remote-id type="pypi">bx-python</remote-id> </upstream> </pkgmetadata> diff --git a/sci-biology/cd-hit/metadata.xml b/sci-biology/cd-hit/metadata.xml index 1f3b07521..7f866330d 100644 --- a/sci-biology/cd-hit/metadata.xml +++ b/sci-biology/cd-hit/metadata.xml @@ -21,7 +21,6 @@ duplicates from pyrosequencing reads. The usage of other programs and scripts can be found in CD-HIT user's guide. </longdescription> <upstream> - <remote-id type="google-code">cdhit</remote-id> <remote-id type="github">weizhongli/cdhit</remote-id> </upstream> </pkgmetadata> diff --git a/sci-biology/clview/metadata.xml b/sci-biology/clview/metadata.xml index 7adf609cd..31020917d 100644 --- a/sci-biology/clview/metadata.xml +++ b/sci-biology/clview/metadata.xml @@ -1,4 +1,4 @@ -<?xml version="1.0" encoding="UTF-8"?> +<?xml version='1.0' encoding='UTF-8'?> <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <maintainer type="person"> diff --git a/sci-biology/codonw/metadata.xml b/sci-biology/codonw/metadata.xml index f66d7b796..fcb129873 100644 --- a/sci-biology/codonw/metadata.xml +++ b/sci-biology/codonw/metadata.xml @@ -1,4 +1,4 @@ -<?xml version="1.0" encoding="UTF-8"?> +<?xml version='1.0' encoding='UTF-8'?> <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <maintainer type="project"> diff --git a/sci-biology/conifer/metadata.xml b/sci-biology/conifer/metadata.xml index fe4173913..d0f646374 100644 --- a/sci-biology/conifer/metadata.xml +++ b/sci-biology/conifer/metadata.xml @@ -1,4 +1,4 @@ -<?xml version="1.0" encoding="UTF-8"?> +<?xml version='1.0' encoding='UTF-8'?> <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <maintainer type="person"> diff --git a/sci-biology/cortex_var/metadata.xml b/sci-biology/cortex_var/metadata.xml index aeef1bbec..fe8a20d2e 100644 --- a/sci-biology/cortex_var/metadata.xml +++ b/sci-biology/cortex_var/metadata.xml @@ -1,4 +1,4 @@ -<?xml version="1.0" encoding="UTF-8"?> +<?xml version='1.0' encoding='UTF-8'?> <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <maintainer type="person"> diff --git a/sci-biology/cutadapt/metadata.xml b/sci-biology/cutadapt/metadata.xml index d432ff9a4..b6f11bf51 100644 --- a/sci-biology/cutadapt/metadata.xml +++ b/sci-biology/cutadapt/metadata.xml @@ -10,7 +10,7 @@ <name>Gentoo Biology Project</name> </maintainer> <upstream> - <remote-id type="pypi">cutadapt</remote-id> <remote-id type="github">marcelm/cutadapt</remote-id> + <remote-id type="pypi">cutadapt</remote-id> </upstream> </pkgmetadata> diff --git a/sci-biology/dipy/metadata.xml b/sci-biology/dipy/metadata.xml index 1df8ab815..23f050681 100644 --- a/sci-biology/dipy/metadata.xml +++ b/sci-biology/dipy/metadata.xml @@ -1,4 +1,4 @@ -<?xml version="1.0" encoding="UTF-8"?> +<?xml version='1.0' encoding='UTF-8'?> <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <maintainer type="person"> diff --git a/sci-biology/discrover/metadata.xml b/sci-biology/discrover/metadata.xml index bab24b6a0..1055813e9 100644 --- a/sci-biology/discrover/metadata.xml +++ b/sci-biology/discrover/metadata.xml @@ -1,4 +1,4 @@ -<?xml version="1.0" encoding="UTF-8"?> +<?xml version='1.0' encoding='UTF-8'?> <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <maintainer type="person"> diff --git a/sci-biology/epga/metadata.xml b/sci-biology/epga/metadata.xml index 991e17bf8..615525179 100644 --- a/sci-biology/epga/metadata.xml +++ b/sci-biology/epga/metadata.xml @@ -1,4 +1,4 @@ -<?xml version="1.0" encoding="UTF-8"?> +<?xml version='1.0' encoding='UTF-8'?> <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <maintainer type="person"> diff --git a/sci-biology/estscan/metadata.xml b/sci-biology/estscan/metadata.xml index d709341c0..138f8c095 100644 --- a/sci-biology/estscan/metadata.xml +++ b/sci-biology/estscan/metadata.xml @@ -1,4 +1,4 @@ -<?xml version="1.0" encoding="UTF-8"?> +<?xml version='1.0' encoding='UTF-8'?> <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <maintainer type="person"> @@ -14,6 +14,6 @@ <flag name="ifc">Undocumented USE</flag> </use> <upstream> - <remote-id type="sourceforge">estscan</remote-id> + <remote-id type="sourceforge">downloads</remote-id> </upstream> </pkgmetadata> diff --git a/sci-biology/exonerate-gff3/metadata.xml b/sci-biology/exonerate-gff3/metadata.xml index 10ca6b365..378558dab 100644 --- a/sci-biology/exonerate-gff3/metadata.xml +++ b/sci-biology/exonerate-gff3/metadata.xml @@ -1,4 +1,4 @@ -<?xml version="1.0" encoding="UTF-8"?> +<?xml version='1.0' encoding='UTF-8'?> <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <maintainer type="person"> diff --git a/sci-biology/fastx_toolkit/metadata.xml b/sci-biology/fastx_toolkit/metadata.xml index 8203c3958..4db9d1693 100644 --- a/sci-biology/fastx_toolkit/metadata.xml +++ b/sci-biology/fastx_toolkit/metadata.xml @@ -1,4 +1,4 @@ -<?xml version="1.0" encoding="UTF-8"?> +<?xml version='1.0' encoding='UTF-8'?> <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <maintainer type="project"> diff --git a/sci-biology/ffindex/metadata.xml b/sci-biology/ffindex/metadata.xml index ccb4049fc..18e09466d 100644 --- a/sci-biology/ffindex/metadata.xml +++ b/sci-biology/ffindex/metadata.xml @@ -1,4 +1,4 @@ -<?xml version="1.0" encoding="UTF-8"?> +<?xml version='1.0' encoding='UTF-8'?> <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <maintainer type="person"> @@ -9,7 +9,4 @@ <email>sci-biology@gentoo.org</email> <name>Gentoo Biology Project</name> </maintainer> - <upstream> - <remote-id type="github">TransDecoder/TransDecoder</remote-id> - </upstream> </pkgmetadata> diff --git a/sci-biology/flexbar/metadata.xml b/sci-biology/flexbar/metadata.xml index 6bf81a0d4..adfdd237a 100644 --- a/sci-biology/flexbar/metadata.xml +++ b/sci-biology/flexbar/metadata.xml @@ -10,7 +10,6 @@ <name>Gentoo Biology Project</name> </maintainer> <upstream> - <remote-id type="sourceforge">flexbar</remote-id> <remote-id type="github">seqan/flexbar</remote-id> </upstream> </pkgmetadata> diff --git a/sci-biology/freebayes/metadata.xml b/sci-biology/freebayes/metadata.xml index a82cda59f..fdd189bd5 100644 --- a/sci-biology/freebayes/metadata.xml +++ b/sci-biology/freebayes/metadata.xml @@ -1,4 +1,4 @@ -<?xml version="1.0" encoding="UTF-8"?> +<?xml version='1.0' encoding='UTF-8'?> <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <maintainer type="person"> diff --git a/sci-biology/fsa/metadata.xml b/sci-biology/fsa/metadata.xml index ec2601d87..d0f646374 100644 --- a/sci-biology/fsa/metadata.xml +++ b/sci-biology/fsa/metadata.xml @@ -1,4 +1,4 @@ -<?xml version="1.0" encoding="UTF-8"?> +<?xml version='1.0' encoding='UTF-8'?> <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <maintainer type="person"> @@ -10,6 +10,6 @@ <name>Gentoo Biology Project</name> </maintainer> <upstream> - <remote-id type="sourceforge">fsa</remote-id> + <remote-id type="sourceforge">downloads</remote-id> </upstream> </pkgmetadata> diff --git a/sci-biology/full_lengther_next/metadata.xml b/sci-biology/full_lengther_next/metadata.xml index 5c826014b..18e09466d 100644 --- a/sci-biology/full_lengther_next/metadata.xml +++ b/sci-biology/full_lengther_next/metadata.xml @@ -1,4 +1,4 @@ -<?xml version="1.0" encoding="UTF-8"?> +<?xml version='1.0' encoding='UTF-8'?> <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <maintainer type="person"> @@ -9,7 +9,4 @@ <email>sci-biology@gentoo.org</email> <name>Gentoo Biology Project</name> </maintainer> - <upstream> - <remote-id type="github">trinityrnaseq/trinityrnaseq</remote-id> - </upstream> </pkgmetadata> diff --git a/sci-biology/gap2caf/metadata.xml b/sci-biology/gap2caf/metadata.xml index fe4173913..d0f646374 100644 --- a/sci-biology/gap2caf/metadata.xml +++ b/sci-biology/gap2caf/metadata.xml @@ -1,4 +1,4 @@ -<?xml version="1.0" encoding="UTF-8"?> +<?xml version='1.0' encoding='UTF-8'?> <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <maintainer type="person"> diff --git a/sci-biology/gatk/metadata.xml b/sci-biology/gatk/metadata.xml index 8c1bb6577..baaa7e21c 100644 --- a/sci-biology/gatk/metadata.xml +++ b/sci-biology/gatk/metadata.xml @@ -1,4 +1,4 @@ -<?xml version="1.0" encoding="UTF-8"?> +<?xml version='1.0' encoding='UTF-8'?> <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <maintainer type="project"> diff --git a/sci-biology/genomeview-bin/metadata.xml b/sci-biology/genomeview-bin/metadata.xml index b6476ca7b..6646b4398 100644 --- a/sci-biology/genomeview-bin/metadata.xml +++ b/sci-biology/genomeview-bin/metadata.xml @@ -1,4 +1,4 @@ -<?xml version="1.0" encoding="UTF-8"?> +<?xml version='1.0' encoding='UTF-8'?> <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <maintainer type="person"> @@ -10,6 +10,6 @@ <name>Gentoo Biology Project</name> </maintainer> <upstream> - <remote-id type="sourceforge">genomeview</remote-id> + <remote-id type="sourceforge">downloads</remote-id> </upstream> </pkgmetadata> diff --git a/sci-biology/gffutils/metadata.xml b/sci-biology/gffutils/metadata.xml index 70c98005f..154685621 100644 --- a/sci-biology/gffutils/metadata.xml +++ b/sci-biology/gffutils/metadata.xml @@ -1,4 +1,4 @@ -<?xml version="1.0" encoding="UTF-8"?> +<?xml version='1.0' encoding='UTF-8'?> <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <maintainer type="person"> diff --git a/sci-biology/glean/metadata.xml b/sci-biology/glean/metadata.xml index be2ebce92..d0f646374 100644 --- a/sci-biology/glean/metadata.xml +++ b/sci-biology/glean/metadata.xml @@ -1,4 +1,4 @@ -<?xml version="1.0" encoding="UTF-8"?> +<?xml version='1.0' encoding='UTF-8'?> <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <maintainer type="person"> @@ -10,6 +10,6 @@ <name>Gentoo Biology Project</name> </maintainer> <upstream> - <remote-id type="sourceforge">glean-gene</remote-id> + <remote-id type="sourceforge">downloads</remote-id> </upstream> </pkgmetadata> diff --git a/sci-biology/igv/metadata.xml b/sci-biology/igv/metadata.xml index 661a0adce..94761dc0e 100644 --- a/sci-biology/igv/metadata.xml +++ b/sci-biology/igv/metadata.xml @@ -1,4 +1,4 @@ -<?xml version="1.0" encoding="UTF-8"?> +<?xml version='1.0' encoding='UTF-8'?> <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <maintainer type="project"> diff --git a/sci-biology/jtreeview/metadata.xml b/sci-biology/jtreeview/metadata.xml index a7083bff9..8dddf1715 100644 --- a/sci-biology/jtreeview/metadata.xml +++ b/sci-biology/jtreeview/metadata.xml @@ -10,7 +10,7 @@ <name>Gentoo Biology Project</name> </maintainer> <upstream> - <remote-id type="sourceforge">jtreeview</remote-id> <remote-id type="bitbucket">TreeView3Dev/treeview3</remote-id> + <remote-id type="sourceforge">jtreeview</remote-id> </upstream> </pkgmetadata> diff --git a/sci-biology/khmer/metadata.xml b/sci-biology/khmer/metadata.xml index 54fa7d5e4..7587454ae 100644 --- a/sci-biology/khmer/metadata.xml +++ b/sci-biology/khmer/metadata.xml @@ -1,4 +1,4 @@ -<?xml version="1.0" encoding="UTF-8"?> +<?xml version='1.0' encoding='UTF-8'?> <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <maintainer type="person"> @@ -10,7 +10,7 @@ <name>Gentoo Biology Project</name> </maintainer> <upstream> - <remote-id type="pypi">khmer</remote-id> <remote-id type="github">ged-lab/khmer</remote-id> + <remote-id type="pypi">khmer</remote-id> </upstream> </pkgmetadata> diff --git a/sci-biology/lighter/metadata.xml b/sci-biology/lighter/metadata.xml index 6299d4cb3..ac43ed281 100644 --- a/sci-biology/lighter/metadata.xml +++ b/sci-biology/lighter/metadata.xml @@ -1,4 +1,4 @@ -<?xml version="1.0" encoding="UTF-8"?> +<?xml version='1.0' encoding='UTF-8'?> <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <maintainer type="person"> diff --git a/sci-biology/lucy/metadata.xml b/sci-biology/lucy/metadata.xml index 4aca9ee62..b349fc682 100644 --- a/sci-biology/lucy/metadata.xml +++ b/sci-biology/lucy/metadata.xml @@ -1,4 +1,4 @@ -<?xml version="1.0" encoding="UTF-8"?> +<?xml version='1.0' encoding='UTF-8'?> <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <maintainer type="person"> diff --git a/sci-biology/manatee-igs/metadata.xml b/sci-biology/manatee-igs/metadata.xml index 8c0eb332c..0318851d4 100644 --- a/sci-biology/manatee-igs/metadata.xml +++ b/sci-biology/manatee-igs/metadata.xml @@ -1,4 +1,4 @@ -<?xml version="1.0" encoding="UTF-8"?> +<?xml version='1.0' encoding='UTF-8'?> <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <maintainer type="person"> diff --git a/sci-biology/manatee-jcvi/metadata.xml b/sci-biology/manatee-jcvi/metadata.xml index 8c0eb332c..d0f646374 100644 --- a/sci-biology/manatee-jcvi/metadata.xml +++ b/sci-biology/manatee-jcvi/metadata.xml @@ -1,4 +1,4 @@ -<?xml version="1.0" encoding="UTF-8"?> +<?xml version='1.0' encoding='UTF-8'?> <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <maintainer type="person"> @@ -10,6 +10,6 @@ <name>Gentoo Biology Project</name> </maintainer> <upstream> - <remote-id type="sourceforge">manatee</remote-id> + <remote-id type="sourceforge">downloads</remote-id> </upstream> </pkgmetadata> diff --git a/sci-biology/metaseq/metadata.xml b/sci-biology/metaseq/metadata.xml index 146972acc..2e63b6ca2 100644 --- a/sci-biology/metaseq/metadata.xml +++ b/sci-biology/metaseq/metadata.xml @@ -1,4 +1,4 @@ -<?xml version="1.0" encoding="UTF-8"?> +<?xml version='1.0' encoding='UTF-8'?> <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <maintainer type="person"> diff --git a/sci-biology/minced/metadata.xml b/sci-biology/minced/metadata.xml index 58a5e2987..6b04ebb8e 100644 --- a/sci-biology/minced/metadata.xml +++ b/sci-biology/minced/metadata.xml @@ -1,4 +1,4 @@ -<?xml version="1.0" encoding="UTF-8"?> +<?xml version='1.0' encoding='UTF-8'?> <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <maintainer type="person"> @@ -10,6 +10,6 @@ <name>Gentoo Biology Project</name> </maintainer> <upstream> - <remote-id type="github">ctSkennerton/minced/tree/master</remote-id> + <remote-id type="github">ctSkennerton/minced</remote-id> </upstream> </pkgmetadata> diff --git a/sci-biology/mira/metadata.xml b/sci-biology/mira/metadata.xml index 0704cef48..737f0bbc5 100644 --- a/sci-biology/mira/metadata.xml +++ b/sci-biology/mira/metadata.xml @@ -1,4 +1,4 @@ -<?xml version="1.0" encoding="UTF-8"?> +<?xml version='1.0' encoding='UTF-8'?> <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <maintainer type="project"> diff --git a/sci-biology/mne-python/metadata.xml b/sci-biology/mne-python/metadata.xml index f1ce8eff1..8b53ad0cd 100644 --- a/sci-biology/mne-python/metadata.xml +++ b/sci-biology/mne-python/metadata.xml @@ -1,4 +1,4 @@ -<?xml version="1.0" encoding="UTF-8"?> +<?xml version='1.0' encoding='UTF-8'?> <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <maintainer type="project"> diff --git a/sci-biology/mrfast/metadata.xml b/sci-biology/mrfast/metadata.xml index 3d6ede5a4..cf3225665 100644 --- a/sci-biology/mrfast/metadata.xml +++ b/sci-biology/mrfast/metadata.xml @@ -1,4 +1,4 @@ -<?xml version="1.0" encoding="UTF-8"?> +<?xml version='1.0' encoding='UTF-8'?> <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <maintainer type="project"> diff --git a/sci-biology/mrsfast/metadata.xml b/sci-biology/mrsfast/metadata.xml index e27afbabf..07ae0c655 100644 --- a/sci-biology/mrsfast/metadata.xml +++ b/sci-biology/mrsfast/metadata.xml @@ -1,4 +1,4 @@ -<?xml version="1.0" encoding="UTF-8"?> +<?xml version='1.0' encoding='UTF-8'?> <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <maintainer type="project"> diff --git a/sci-biology/ncbi-genome-download/metadata.xml b/sci-biology/ncbi-genome-download/metadata.xml index 80cc5d483..da3901ed3 100644 --- a/sci-biology/ncbi-genome-download/metadata.xml +++ b/sci-biology/ncbi-genome-download/metadata.xml @@ -1,12 +1,12 @@ -<?xml version="1.0" encoding="UTF-8"?> +<?xml version='1.0' encoding='UTF-8'?> <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <maintainer type="person"> <email>freeh4cker@gmail.com</email> <name>Bertrand Néron</name> </maintainer> - <longdescription>Scripts to download genomes from the NCBI FTP servers.</longdescription> + <longdescription>Scripts to download genomes from the NCBI FTP servers.</longdescription> <upstream> - <remote-id type="github">ncbi-genome-download</remote-id> + <remote-id type="github">kblin/ncbi-genome-download</remote-id> </upstream> </pkgmetadata> diff --git a/sci-biology/ngsview/metadata.xml b/sci-biology/ngsview/metadata.xml index de315fd15..e8c46ee7f 100644 --- a/sci-biology/ngsview/metadata.xml +++ b/sci-biology/ngsview/metadata.xml @@ -1,4 +1,4 @@ -<?xml version="1.0" encoding="UTF-8"?> +<?xml version='1.0' encoding='UTF-8'?> <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <maintainer type="person"> @@ -10,6 +10,6 @@ <name>Gentoo Biology Project</name> </maintainer> <upstream> - <remote-id type="sourceforge">ngsview</remote-id> + <remote-id type="sourceforge">projects</remote-id> </upstream> </pkgmetadata> diff --git a/sci-biology/nilearn/metadata.xml b/sci-biology/nilearn/metadata.xml index 3954d1f57..2730ad207 100644 --- a/sci-biology/nilearn/metadata.xml +++ b/sci-biology/nilearn/metadata.xml @@ -18,7 +18,7 @@ <flag name="plot">Adds optional dependency needed for plotting function subset.</flag> </use> <upstream> - <remote-id type="pypi">nilearn</remote-id> <remote-id type="github">nilearn/nilearn</remote-id> + <remote-id type="pypi">nilearn</remote-id> </upstream> </pkgmetadata> diff --git a/sci-biology/nitime/metadata.xml b/sci-biology/nitime/metadata.xml index 549788bdf..1ed613b50 100644 --- a/sci-biology/nitime/metadata.xml +++ b/sci-biology/nitime/metadata.xml @@ -1,4 +1,4 @@ -<?xml version="1.0" encoding="UTF-8"?> +<?xml version='1.0' encoding='UTF-8'?> <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <maintainer type="person"> diff --git a/sci-biology/parafly/metadata.xml b/sci-biology/parafly/metadata.xml index 6f6587b8c..f818cb27f 100644 --- a/sci-biology/parafly/metadata.xml +++ b/sci-biology/parafly/metadata.xml @@ -1,4 +1,4 @@ -<?xml version="1.0" encoding="UTF-8"?> +<?xml version='1.0' encoding='UTF-8'?> <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <maintainer type="person"> diff --git a/sci-biology/pb-honey/metadata.xml b/sci-biology/pb-honey/metadata.xml index 7b4669b4b..69f227c89 100644 --- a/sci-biology/pb-honey/metadata.xml +++ b/sci-biology/pb-honey/metadata.xml @@ -1,4 +1,4 @@ -<?xml version="1.0" encoding="UTF-8"?> +<?xml version='1.0' encoding='UTF-8'?> <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <maintainer type="person"> diff --git a/sci-biology/pb-jelly/metadata.xml b/sci-biology/pb-jelly/metadata.xml index 7b4669b4b..69f227c89 100644 --- a/sci-biology/pb-jelly/metadata.xml +++ b/sci-biology/pb-jelly/metadata.xml @@ -1,4 +1,4 @@ -<?xml version="1.0" encoding="UTF-8"?> +<?xml version='1.0' encoding='UTF-8'?> <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <maintainer type="person"> diff --git a/sci-biology/perlprimer/metadata.xml b/sci-biology/perlprimer/metadata.xml index 9454a7f64..63c8e8be8 100644 --- a/sci-biology/perlprimer/metadata.xml +++ b/sci-biology/perlprimer/metadata.xml @@ -1,4 +1,4 @@ -<?xml version="1.0" encoding="UTF-8"?> +<?xml version='1.0' encoding='UTF-8'?> <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <maintainer type="project"> diff --git a/sci-biology/picard/metadata.xml b/sci-biology/picard/metadata.xml index 4ec209225..c316dd522 100644 --- a/sci-biology/picard/metadata.xml +++ b/sci-biology/picard/metadata.xml @@ -10,7 +10,7 @@ <name>Gentoo Biology Project</name> </maintainer> <upstream> - <remote-id type="sourceforge">picard</remote-id> <remote-id type="github">broadinstitute/picard</remote-id> + <remote-id type="sourceforge">picard</remote-id> </upstream> </pkgmetadata> diff --git a/sci-biology/psychopy/metadata.xml b/sci-biology/psychopy/metadata.xml index e5d49f5cb..e15c9ad62 100644 --- a/sci-biology/psychopy/metadata.xml +++ b/sci-biology/psychopy/metadata.xml @@ -6,7 +6,6 @@ <name>Horea Christian</name> </maintainer> <upstream> - <remote-id type="sourceforge">psychpy</remote-id> <remote-id type="github">psychopy/psychopy</remote-id> </upstream> </pkgmetadata> diff --git a/sci-biology/pybedtools/metadata.xml b/sci-biology/pybedtools/metadata.xml index 320a73b8e..1e65e6b61 100644 --- a/sci-biology/pybedtools/metadata.xml +++ b/sci-biology/pybedtools/metadata.xml @@ -1,4 +1,4 @@ -<?xml version="1.0" encoding="UTF-8"?> +<?xml version='1.0' encoding='UTF-8'?> <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <maintainer type="person"> diff --git a/sci-biology/pyfaidx/metadata.xml b/sci-biology/pyfaidx/metadata.xml index ea3df526e..d12d54610 100644 --- a/sci-biology/pyfaidx/metadata.xml +++ b/sci-biology/pyfaidx/metadata.xml @@ -1,4 +1,4 @@ -<?xml version="1.0" encoding="UTF-8"?> +<?xml version='1.0' encoding='UTF-8'?> <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <maintainer type="person"> diff --git a/sci-biology/pysam/metadata.xml b/sci-biology/pysam/metadata.xml index d286c313f..3ff9cd0b0 100644 --- a/sci-biology/pysam/metadata.xml +++ b/sci-biology/pysam/metadata.xml @@ -1,12 +1,8 @@ -<?xml version="1.0" encoding="UTF-8"?> +<?xml version='1.0' encoding='UTF-8'?> <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <maintainer type="project"> <email>sci-biology@gentoo.org</email> <name>Gentoo Biology Project</name> </maintainer> - <upstream> - <remote-id type="google-code">pysam</remote-id> - <remote-id type="github">pysam-developers/pysam</remote-id> - </upstream> </pkgmetadata> diff --git a/sci-biology/pysurfer/metadata.xml b/sci-biology/pysurfer/metadata.xml index 20bf7714c..35df4a292 100644 --- a/sci-biology/pysurfer/metadata.xml +++ b/sci-biology/pysurfer/metadata.xml @@ -1,4 +1,4 @@ -<?xml version="1.0" encoding="UTF-8"?> +<?xml version='1.0' encoding='UTF-8'?> <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <maintainer type="project"> diff --git a/sci-biology/quast/metadata.xml b/sci-biology/quast/metadata.xml index fc50a9a26..c275f1f78 100644 --- a/sci-biology/quast/metadata.xml +++ b/sci-biology/quast/metadata.xml @@ -1,4 +1,4 @@ -<?xml version="1.0" encoding="UTF-8"?> +<?xml version='1.0' encoding='UTF-8'?> <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <maintainer type="person"> diff --git a/sci-biology/rum/metadata.xml b/sci-biology/rum/metadata.xml index 797ed0b85..d2d1746d2 100644 --- a/sci-biology/rum/metadata.xml +++ b/sci-biology/rum/metadata.xml @@ -1,4 +1,4 @@ -<?xml version="1.0" encoding="UTF-8"?> +<?xml version='1.0' encoding='UTF-8'?> <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <maintainer type="person"> @@ -10,6 +10,6 @@ <name>Gentoo Biology Project</name> </maintainer> <upstream> - <remote-id type="github">itmat/rum/wiki</remote-id> + <remote-id type="github">itmat/rum</remote-id> </upstream> </pkgmetadata> diff --git a/sci-biology/sabre/metadata.xml b/sci-biology/sabre/metadata.xml index 6efd5bbbd..4e02c2f05 100644 --- a/sci-biology/sabre/metadata.xml +++ b/sci-biology/sabre/metadata.xml @@ -1,4 +1,4 @@ -<?xml version="1.0" encoding="UTF-8"?> +<?xml version='1.0' encoding='UTF-8'?> <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <maintainer type="person"> diff --git a/sci-biology/sailfish/metadata.xml b/sci-biology/sailfish/metadata.xml index 2831ceb14..61d2e7a64 100644 --- a/sci-biology/sailfish/metadata.xml +++ b/sci-biology/sailfish/metadata.xml @@ -1,4 +1,4 @@ -<?xml version="1.0" encoding="UTF-8"?> +<?xml version='1.0' encoding='UTF-8'?> <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <maintainer type="project"> diff --git a/sci-biology/salmon/metadata.xml b/sci-biology/salmon/metadata.xml index cb020ecde..62715bec6 100644 --- a/sci-biology/salmon/metadata.xml +++ b/sci-biology/salmon/metadata.xml @@ -1,4 +1,4 @@ -<?xml version="1.0" encoding="UTF-8"?> +<?xml version='1.0' encoding='UTF-8'?> <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <maintainer type="project"> diff --git a/sci-biology/samstat/metadata.xml b/sci-biology/samstat/metadata.xml index 74a00f598..516373ad8 100644 --- a/sci-biology/samstat/metadata.xml +++ b/sci-biology/samstat/metadata.xml @@ -1,4 +1,4 @@ -<?xml version="1.0" encoding="UTF-8"?> +<?xml version='1.0' encoding='UTF-8'?> <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <maintainer type="person"> diff --git a/sci-biology/samtools/metadata.xml b/sci-biology/samtools/metadata.xml index 5b953af48..49735ee17 100644 --- a/sci-biology/samtools/metadata.xml +++ b/sci-biology/samtools/metadata.xml @@ -1,4 +1,4 @@ -<?xml version="1.0" encoding="UTF-8"?> +<?xml version='1.0' encoding='UTF-8'?> <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <maintainer type="project"> diff --git a/sci-biology/scaffold_builder/metadata.xml b/sci-biology/scaffold_builder/metadata.xml index 0af91617e..d0f646374 100644 --- a/sci-biology/scaffold_builder/metadata.xml +++ b/sci-biology/scaffold_builder/metadata.xml @@ -1,4 +1,4 @@ -<?xml version="1.0" encoding="UTF-8"?> +<?xml version='1.0' encoding='UTF-8'?> <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <maintainer type="person"> @@ -10,6 +10,6 @@ <name>Gentoo Biology Project</name> </maintainer> <upstream> - <remote-id type="sourceforge">scaffold-b</remote-id> + <remote-id type="sourceforge">downloads</remote-id> </upstream> </pkgmetadata> diff --git a/sci-biology/scbi_blast/metadata.xml b/sci-biology/scbi_blast/metadata.xml index dd1623955..9eed61d49 100644 --- a/sci-biology/scbi_blast/metadata.xml +++ b/sci-biology/scbi_blast/metadata.xml @@ -10,7 +10,6 @@ <name>Gentoo Biology Project</name> </maintainer> <upstream> - <remote-id type="github">trinityrnaseq/trinityrnaseq</remote-id> <remote-id type="rubygems">scbi_blast</remote-id> </upstream> </pkgmetadata> diff --git a/sci-biology/scbi_fasta/metadata.xml b/sci-biology/scbi_fasta/metadata.xml index f8f3e47a2..36ecf15ef 100644 --- a/sci-biology/scbi_fasta/metadata.xml +++ b/sci-biology/scbi_fasta/metadata.xml @@ -10,7 +10,6 @@ <name>Gentoo Biology Project</name> </maintainer> <upstream> - <remote-id type="github">trinityrnaseq/trinityrnaseq</remote-id> <remote-id type="rubygems">scbi_fasta</remote-id> </upstream> </pkgmetadata> diff --git a/sci-biology/scbi_mapreduce/metadata.xml b/sci-biology/scbi_mapreduce/metadata.xml index a39eed183..c9e61f5f3 100644 --- a/sci-biology/scbi_mapreduce/metadata.xml +++ b/sci-biology/scbi_mapreduce/metadata.xml @@ -10,7 +10,6 @@ <name>Gentoo Biology Project</name> </maintainer> <upstream> - <remote-id type="github">trinityrnaseq/trinityrnaseq</remote-id> <remote-id type="rubygems">scbi_mapreduce</remote-id> </upstream> </pkgmetadata> diff --git a/sci-biology/scbi_plot/metadata.xml b/sci-biology/scbi_plot/metadata.xml index 5e2713549..4c8659f89 100644 --- a/sci-biology/scbi_plot/metadata.xml +++ b/sci-biology/scbi_plot/metadata.xml @@ -10,7 +10,6 @@ <name>Gentoo Biology Project</name> </maintainer> <upstream> - <remote-id type="github">trinityrnaseq/trinityrnaseq</remote-id> <remote-id type="rubygems">scbi_plot</remote-id> </upstream> </pkgmetadata> diff --git a/sci-biology/screed/metadata.xml b/sci-biology/screed/metadata.xml index 65a0f9813..21ae0b4b6 100644 --- a/sci-biology/screed/metadata.xml +++ b/sci-biology/screed/metadata.xml @@ -1,4 +1,4 @@ -<?xml version="1.0" encoding="UTF-8"?> +<?xml version='1.0' encoding='UTF-8'?> <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <maintainer type="project"> @@ -6,7 +6,7 @@ <name>Gentoo Biology Project</name> </maintainer> <upstream> - <remote-id type="pypi">screed</remote-id> <remote-id type="github">ged-lab/screed</remote-id> + <remote-id type="pypi">screed</remote-id> </upstream> </pkgmetadata> diff --git a/sci-biology/scythe/metadata.xml b/sci-biology/scythe/metadata.xml index 09173eedf..4bcbeeb31 100644 --- a/sci-biology/scythe/metadata.xml +++ b/sci-biology/scythe/metadata.xml @@ -1,4 +1,4 @@ -<?xml version="1.0" encoding="UTF-8"?> +<?xml version='1.0' encoding='UTF-8'?> <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <maintainer type="person"> diff --git a/sci-biology/sga/metadata.xml b/sci-biology/sga/metadata.xml index 891445344..028b21c5d 100644 --- a/sci-biology/sga/metadata.xml +++ b/sci-biology/sga/metadata.xml @@ -1,4 +1,4 @@ -<?xml version="1.0" encoding="UTF-8"?> +<?xml version='1.0' encoding='UTF-8'?> <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <maintainer type="person"> diff --git a/sci-biology/sickle/metadata.xml b/sci-biology/sickle/metadata.xml index 3bf94ce42..5607edcbd 100644 --- a/sci-biology/sickle/metadata.xml +++ b/sci-biology/sickle/metadata.xml @@ -1,4 +1,4 @@ -<?xml version="1.0" encoding="UTF-8"?> +<?xml version='1.0' encoding='UTF-8'?> <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <maintainer type="person"> diff --git a/sci-biology/skewer-bin/metadata.xml b/sci-biology/skewer-bin/metadata.xml index ef427fa2c..4c94908e8 100644 --- a/sci-biology/skewer-bin/metadata.xml +++ b/sci-biology/skewer-bin/metadata.xml @@ -1,4 +1,4 @@ -<?xml version="1.0" encoding="UTF-8"?> +<?xml version='1.0' encoding='UTF-8'?> <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <maintainer type="person"> diff --git a/sci-biology/staden/metadata.xml b/sci-biology/staden/metadata.xml index 495d3ba4e..73d16b005 100644 --- a/sci-biology/staden/metadata.xml +++ b/sci-biology/staden/metadata.xml @@ -1,4 +1,4 @@ -<?xml version="1.0" encoding="UTF-8"?> +<?xml version='1.0' encoding='UTF-8'?> <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <maintainer type="person"> diff --git a/sci-biology/subread/metadata.xml b/sci-biology/subread/metadata.xml index 8e4c81897..dc7a68adc 100644 --- a/sci-biology/subread/metadata.xml +++ b/sci-biology/subread/metadata.xml @@ -1,4 +1,4 @@ -<?xml version="1.0" encoding="UTF-8"?> +<?xml version='1.0' encoding='UTF-8'?> <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <maintainer type="person"> diff --git a/sci-biology/swissknife/metadata.xml b/sci-biology/swissknife/metadata.xml index e3353da6f..cc4d8f93e 100644 --- a/sci-biology/swissknife/metadata.xml +++ b/sci-biology/swissknife/metadata.xml @@ -1,4 +1,4 @@ -<?xml version="1.0" encoding="UTF-8"?> +<?xml version='1.0' encoding='UTF-8'?> <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <maintainer type="project"> diff --git a/sci-biology/trinityrnaseq/metadata.xml b/sci-biology/trinityrnaseq/metadata.xml index 5c826014b..bc150ff20 100644 --- a/sci-biology/trinityrnaseq/metadata.xml +++ b/sci-biology/trinityrnaseq/metadata.xml @@ -1,4 +1,4 @@ -<?xml version="1.0" encoding="UTF-8"?> +<?xml version='1.0' encoding='UTF-8'?> <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <maintainer type="person"> diff --git a/sci-biology/trowel/metadata.xml b/sci-biology/trowel/metadata.xml index 111e2c698..d0f646374 100644 --- a/sci-biology/trowel/metadata.xml +++ b/sci-biology/trowel/metadata.xml @@ -1,4 +1,4 @@ -<?xml version="1.0" encoding="UTF-8"?> +<?xml version='1.0' encoding='UTF-8'?> <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <maintainer type="person"> @@ -10,6 +10,6 @@ <name>Gentoo Biology Project</name> </maintainer> <upstream> - <remote-id type="sourceforge">trowel-ec</remote-id> + <remote-id type="sourceforge">downloads</remote-id> </upstream> </pkgmetadata> diff --git a/sci-biology/vcftools/metadata.xml b/sci-biology/vcftools/metadata.xml index 6c22d1920..87e26a1d6 100644 --- a/sci-biology/vcftools/metadata.xml +++ b/sci-biology/vcftools/metadata.xml @@ -6,7 +6,7 @@ <name>Gentoo Biology Project</name> </maintainer> <upstream> - <remote-id type="sourceforge">vcftools</remote-id> <remote-id type="github">vcftools/vcftools</remote-id> + <remote-id type="sourceforge">vcftools</remote-id> </upstream> </pkgmetadata> diff --git a/sci-biology/wgs-assembler/metadata.xml b/sci-biology/wgs-assembler/metadata.xml index fa8a259ff..5564097a7 100644 --- a/sci-biology/wgs-assembler/metadata.xml +++ b/sci-biology/wgs-assembler/metadata.xml @@ -1,4 +1,4 @@ -<?xml version="1.0" encoding="UTF-8"?> +<?xml version='1.0' encoding='UTF-8'?> <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <maintainer type="project"> diff --git a/sci-chemistry/GromacsWrapper/metadata.xml b/sci-chemistry/GromacsWrapper/metadata.xml index 16752065b..f5a6c6b65 100644 --- a/sci-chemistry/GromacsWrapper/metadata.xml +++ b/sci-chemistry/GromacsWrapper/metadata.xml @@ -1,4 +1,4 @@ -<?xml version="1.0" encoding="UTF-8"?> +<?xml version='1.0' encoding='UTF-8'?> <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <maintainer type="person"> @@ -9,7 +9,4 @@ <email>sci-chemistry@gentoo.org</email> <name>Gentoo Chemistry Project</name> </maintainer> - <upstream> - <remote-id type="github">orbeckst/GromacsWrapper</remote-id> - </upstream> </pkgmetadata> diff --git a/sci-chemistry/NMRdyn/metadata.xml b/sci-chemistry/NMRdyn/metadata.xml index 5670afe1a..b7684473f 100644 --- a/sci-chemistry/NMRdyn/metadata.xml +++ b/sci-chemistry/NMRdyn/metadata.xml @@ -1,4 +1,4 @@ -<?xml version="1.0" encoding="UTF-8"?> +<?xml version='1.0' encoding='UTF-8'?> <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <maintainer type="person"> diff --git a/sci-chemistry/burrow-owl/metadata.xml b/sci-chemistry/burrow-owl/metadata.xml index 776713a5d..b6097c0e2 100644 --- a/sci-chemistry/burrow-owl/metadata.xml +++ b/sci-chemistry/burrow-owl/metadata.xml @@ -1,4 +1,4 @@ -<?xml version="1.0" encoding="UTF-8"?> +<?xml version='1.0' encoding='UTF-8'?> <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <maintainer type="project"> diff --git a/sci-chemistry/cnsface/metadata.xml b/sci-chemistry/cnsface/metadata.xml index 2804b70c4..8b64e0473 100644 --- a/sci-chemistry/cnsface/metadata.xml +++ b/sci-chemistry/cnsface/metadata.xml @@ -1,4 +1,4 @@ -<?xml version="1.0" encoding="UTF-8"?> +<?xml version='1.0' encoding='UTF-8'?> <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <maintainer type="project"> diff --git a/sci-chemistry/mdsctk/metadata.xml b/sci-chemistry/mdsctk/metadata.xml index 824d5f0e9..88176dc96 100644 --- a/sci-chemistry/mdsctk/metadata.xml +++ b/sci-chemistry/mdsctk/metadata.xml @@ -1,4 +1,4 @@ -<?xml version="1.0" encoding="UTF-8"?> +<?xml version='1.0' encoding='UTF-8'?> <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <maintainer type="person"> diff --git a/sci-chemistry/openbabel-java/metadata.xml b/sci-chemistry/openbabel-java/metadata.xml index 89e965e2f..7b3bd73b6 100644 --- a/sci-chemistry/openbabel-java/metadata.xml +++ b/sci-chemistry/openbabel-java/metadata.xml @@ -1,4 +1,4 @@ -<?xml version="1.0" encoding="UTF-8"?> +<?xml version='1.0' encoding='UTF-8'?> <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <maintainer type="project"> diff --git a/sci-chemistry/openbabel-perl/metadata.xml b/sci-chemistry/openbabel-perl/metadata.xml index 08a5886c7..2c0c6f576 100644 --- a/sci-chemistry/openbabel-perl/metadata.xml +++ b/sci-chemistry/openbabel-perl/metadata.xml @@ -1,4 +1,4 @@ -<?xml version="1.0" encoding="UTF-8"?> +<?xml version='1.0' encoding='UTF-8'?> <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <maintainer type="project"> diff --git a/sci-chemistry/openbabel-python/metadata.xml b/sci-chemistry/openbabel-python/metadata.xml index b332bc446..55af72716 100644 --- a/sci-chemistry/openbabel-python/metadata.xml +++ b/sci-chemistry/openbabel-python/metadata.xml @@ -1,4 +1,4 @@ -<?xml version="1.0" encoding="UTF-8"?> +<?xml version='1.0' encoding='UTF-8'?> <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <maintainer type="project"> diff --git a/sci-chemistry/openbabel-ruby/metadata.xml b/sci-chemistry/openbabel-ruby/metadata.xml index 2988de9aa..5912568a0 100644 --- a/sci-chemistry/openbabel-ruby/metadata.xml +++ b/sci-chemistry/openbabel-ruby/metadata.xml @@ -1,4 +1,4 @@ -<?xml version="1.0" encoding="UTF-8"?> +<?xml version='1.0' encoding='UTF-8'?> <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <maintainer type="project"> diff --git a/sci-chemistry/openbabel/metadata.xml b/sci-chemistry/openbabel/metadata.xml index 1508b8cc5..a76a86e66 100644 --- a/sci-chemistry/openbabel/metadata.xml +++ b/sci-chemistry/openbabel/metadata.xml @@ -1,4 +1,4 @@ -<?xml version="1.0" encoding="UTF-8"?> +<?xml version='1.0' encoding='UTF-8'?> <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <maintainer type="project"> diff --git a/sci-chemistry/pesto/metadata.xml b/sci-chemistry/pesto/metadata.xml index 75fae4ed2..7db888e43 100644 --- a/sci-chemistry/pesto/metadata.xml +++ b/sci-chemistry/pesto/metadata.xml @@ -1,4 +1,4 @@ -<?xml version="1.0" encoding="UTF-8"?> +<?xml version='1.0' encoding='UTF-8'?> <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <maintainer type="project"> diff --git a/sci-chemistry/pymol-plugins-psico/metadata.xml b/sci-chemistry/pymol-plugins-psico/metadata.xml index 1853602e7..6f3c380f3 100644 --- a/sci-chemistry/pymol-plugins-psico/metadata.xml +++ b/sci-chemistry/pymol-plugins-psico/metadata.xml @@ -1,4 +1,4 @@ -<?xml version="1.0" encoding="UTF-8"?> +<?xml version='1.0' encoding='UTF-8'?> <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <maintainer type="person"> diff --git a/sci-chemistry/pyquante/metadata.xml b/sci-chemistry/pyquante/metadata.xml index 001c3b384..191423d34 100644 --- a/sci-chemistry/pyquante/metadata.xml +++ b/sci-chemistry/pyquante/metadata.xml @@ -1,4 +1,4 @@ -<?xml version="1.0" encoding="UTF-8"?> +<?xml version='1.0' encoding='UTF-8'?> <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <maintainer type="project"> diff --git a/sci-chemistry/rosetta-tools/metadata.xml b/sci-chemistry/rosetta-tools/metadata.xml index fa775fc97..3d6594808 100644 --- a/sci-chemistry/rosetta-tools/metadata.xml +++ b/sci-chemistry/rosetta-tools/metadata.xml @@ -1,4 +1,4 @@ -<?xml version="1.0" encoding="UTF-8"?> +<?xml version='1.0' encoding='UTF-8'?> <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <maintainer type="project"> diff --git a/sci-electronics/minipro/metadata.xml b/sci-electronics/minipro/metadata.xml index c5ec74eb7..35f8f7cd4 100644 --- a/sci-electronics/minipro/metadata.xml +++ b/sci-electronics/minipro/metadata.xml @@ -1,4 +1,4 @@ -<?xml version="1.0" encoding="UTF-8"?> +<?xml version='1.0' encoding='UTF-8'?> <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <maintainer type="project"> diff --git a/sci-electronics/player/metadata.xml b/sci-electronics/player/metadata.xml index f4fe34e7b..f6e040f1e 100644 --- a/sci-electronics/player/metadata.xml +++ b/sci-electronics/player/metadata.xml @@ -1,4 +1,4 @@ -<?xml version="1.0" encoding="UTF-8"?> +<?xml version='1.0' encoding='UTF-8'?> <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <maintainer type="project"> diff --git a/sci-electronics/stage/metadata.xml b/sci-electronics/stage/metadata.xml index 21b7cf292..8dfe10e85 100644 --- a/sci-electronics/stage/metadata.xml +++ b/sci-electronics/stage/metadata.xml @@ -1,4 +1,4 @@ -<?xml version="1.0" encoding="UTF-8"?> +<?xml version='1.0' encoding='UTF-8'?> <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <maintainer type="project"> diff --git a/sci-electronics/tnt/metadata.xml b/sci-electronics/tnt/metadata.xml index 4422f5d6e..892756178 100644 --- a/sci-electronics/tnt/metadata.xml +++ b/sci-electronics/tnt/metadata.xml @@ -1,4 +1,4 @@ -<?xml version="1.0" encoding="UTF-8"?> +<?xml version='1.0' encoding='UTF-8'?> <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <maintainer type="project"> diff --git a/sci-geosciences/pydap/metadata.xml b/sci-geosciences/pydap/metadata.xml index 7ab561242..35bc07d09 100644 --- a/sci-geosciences/pydap/metadata.xml +++ b/sci-geosciences/pydap/metadata.xml @@ -1,4 +1,4 @@ -<?xml version="1.0" encoding="UTF-8"?> +<?xml version='1.0' encoding='UTF-8'?> <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <maintainer type="person"> @@ -11,7 +11,7 @@ </maintainer> <longdescription lang="en"> Pydap is a pure Python library implementing the Data Access Protocol. -</longdescription> + </longdescription> <upstream> <remote-id type="pypi">Pydap</remote-id> </upstream> diff --git a/sci-geosciences/pydap_handlers_cdms/metadata.xml b/sci-geosciences/pydap_handlers_cdms/metadata.xml index 2cf9da170..925bead0a 100644 --- a/sci-geosciences/pydap_handlers_cdms/metadata.xml +++ b/sci-geosciences/pydap_handlers_cdms/metadata.xml @@ -1,4 +1,4 @@ -<?xml version="1.0" encoding="UTF-8"?> +<?xml version='1.0' encoding='UTF-8'?> <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <maintainer type="person"> @@ -12,7 +12,7 @@ <longdescription lang="en"> Pydap is a pure Python library implementing the Data Access Protocol. pydap_handlers_cdms allows Pydap server to serve GRADS formatted files. -</longdescription> + </longdescription> <upstream> <remote-id type="pypi">pydap.handlers.cdms</remote-id> </upstream> diff --git a/sci-geosciences/pydap_handlers_csv/metadata.xml b/sci-geosciences/pydap_handlers_csv/metadata.xml index aefbff08c..3dd98b3b7 100644 --- a/sci-geosciences/pydap_handlers_csv/metadata.xml +++ b/sci-geosciences/pydap_handlers_csv/metadata.xml @@ -1,4 +1,4 @@ -<?xml version="1.0" encoding="UTF-8"?> +<?xml version='1.0' encoding='UTF-8'?> <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <maintainer type="person"> @@ -12,7 +12,7 @@ <longdescription lang="en"> Pydap is a pure Python library implementing the Data Access Protocol. pydap_handlers_csv allows Pydap server to serve CSV formatted files. -</longdescription> + </longdescription> <upstream> <remote-id type="pypi">pydap.handlers.csv</remote-id> </upstream> diff --git a/sci-geosciences/pydap_handlers_hdf5/metadata.xml b/sci-geosciences/pydap_handlers_hdf5/metadata.xml index 3c284fac6..011fb0cc9 100644 --- a/sci-geosciences/pydap_handlers_hdf5/metadata.xml +++ b/sci-geosciences/pydap_handlers_hdf5/metadata.xml @@ -1,4 +1,4 @@ -<?xml version="1.0" encoding="UTF-8"?> +<?xml version='1.0' encoding='UTF-8'?> <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <maintainer type="person"> @@ -12,7 +12,7 @@ <longdescription lang="en"> Pydap is a pure Python library implementing the Data Access Protocol. pydap_handlers_hdf5 allows Pydap server to serve hdf5 formatted files. -</longdescription> + </longdescription> <upstream> <remote-id type="pypi">pydap.handlers.hdf5</remote-id> </upstream> diff --git a/sci-geosciences/pydap_handlers_nca/metadata.xml b/sci-geosciences/pydap_handlers_nca/metadata.xml index ff2895a69..eabcc1cd3 100644 --- a/sci-geosciences/pydap_handlers_nca/metadata.xml +++ b/sci-geosciences/pydap_handlers_nca/metadata.xml @@ -1,4 +1,4 @@ -<?xml version="1.0" encoding="UTF-8"?> +<?xml version='1.0' encoding='UTF-8'?> <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <maintainer type="person"> @@ -12,7 +12,7 @@ <longdescription lang="en"> Pydap is a pure Python library implementing the Data Access Protocol. pydap_handlers_nca allows Pydap server to serve aggregated NetCDF formatted files. -</longdescription> + </longdescription> <upstream> <remote-id type="pypi">pydap.handlers.nca</remote-id> </upstream> diff --git a/sci-geosciences/pydap_handlers_netcdf/metadata.xml b/sci-geosciences/pydap_handlers_netcdf/metadata.xml index f0ac58a43..de6bf5fbd 100644 --- a/sci-geosciences/pydap_handlers_netcdf/metadata.xml +++ b/sci-geosciences/pydap_handlers_netcdf/metadata.xml @@ -1,4 +1,4 @@ -<?xml version="1.0" encoding="UTF-8"?> +<?xml version='1.0' encoding='UTF-8'?> <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <maintainer type="person"> @@ -12,7 +12,7 @@ <longdescription lang="en"> Pydap is a pure Python library implementing the Data Access Protocol. pydap_handlers_netcdf allows Pydap server to serve NetCDF formatted files. -</longdescription> + </longdescription> <upstream> <remote-id type="pypi">pydap.handlers.netcdf</remote-id> </upstream> diff --git a/sci-geosciences/pydap_handlers_proxy/metadata.xml b/sci-geosciences/pydap_handlers_proxy/metadata.xml index aaaa997b1..3e3f499fd 100644 --- a/sci-geosciences/pydap_handlers_proxy/metadata.xml +++ b/sci-geosciences/pydap_handlers_proxy/metadata.xml @@ -1,4 +1,4 @@ -<?xml version="1.0" encoding="UTF-8"?> +<?xml version='1.0' encoding='UTF-8'?> <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <maintainer type="person"> @@ -12,7 +12,7 @@ <longdescription lang="en"> Pydap is a pure Python library implementing the Data Access Protocol. pydap_handlers_proxy allows Pydap server to serve data from other web sites. -</longdescription> + </longdescription> <upstream> <remote-id type="pypi">pydap.handlers.proxy</remote-id> </upstream> diff --git a/sci-geosciences/pydap_handlers_sql/metadata.xml b/sci-geosciences/pydap_handlers_sql/metadata.xml index c34bad9b7..052f208ec 100644 --- a/sci-geosciences/pydap_handlers_sql/metadata.xml +++ b/sci-geosciences/pydap_handlers_sql/metadata.xml @@ -1,4 +1,4 @@ -<?xml version="1.0" encoding="UTF-8"?> +<?xml version='1.0' encoding='UTF-8'?> <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <maintainer type="person"> @@ -12,7 +12,7 @@ <longdescription lang="en"> Pydap is a pure Python library implementing the Data Access Protocol. pydap_handlers_sql allows Pydap server to serve data from SQL databases. -</longdescription> + </longdescription> <upstream> <remote-id type="pypi">pydap.handlers.sql</remote-id> </upstream> diff --git a/sci-geosciences/pydap_handlers_sqlite/metadata.xml b/sci-geosciences/pydap_handlers_sqlite/metadata.xml index b6d9d280d..22de7b516 100644 --- a/sci-geosciences/pydap_handlers_sqlite/metadata.xml +++ b/sci-geosciences/pydap_handlers_sqlite/metadata.xml @@ -1,4 +1,4 @@ -<?xml version="1.0" encoding="UTF-8"?> +<?xml version='1.0' encoding='UTF-8'?> <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <maintainer type="person"> @@ -12,7 +12,7 @@ <longdescription lang="en"> Pydap is a pure Python library implementing the Data Access Protocol. pydap_handlers_sqlite allows Pydap server to serve data from SQLite files. -</longdescription> + </longdescription> <upstream> <remote-id type="pypi">pydap.handlers.sqlite</remote-id> </upstream> diff --git a/sci-geosciences/pydap_responses_kml/metadata.xml b/sci-geosciences/pydap_responses_kml/metadata.xml index 4f434c870..b6268e323 100644 --- a/sci-geosciences/pydap_responses_kml/metadata.xml +++ b/sci-geosciences/pydap_responses_kml/metadata.xml @@ -1,4 +1,4 @@ -<?xml version="1.0" encoding="UTF-8"?> +<?xml version='1.0' encoding='UTF-8'?> <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <maintainer type="person"> @@ -13,7 +13,7 @@ Pydap is a pure Python library implementing the Data Access Protocol. pydap_responses_kml allows Pydap server to use Google Earth to visualize data. -</longdescription> + </longdescription> <upstream> <remote-id type="pypi">pydap.responses.kml</remote-id> </upstream> diff --git a/sci-geosciences/pydap_responses_matlab/metadata.xml b/sci-geosciences/pydap_responses_matlab/metadata.xml index c373db324..8f1b6dc9c 100644 --- a/sci-geosciences/pydap_responses_matlab/metadata.xml +++ b/sci-geosciences/pydap_responses_matlab/metadata.xml @@ -1,4 +1,4 @@ -<?xml version="1.0" encoding="UTF-8"?> +<?xml version='1.0' encoding='UTF-8'?> <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <maintainer type="person"> @@ -12,7 +12,7 @@ <longdescription lang="en"> Pydap is a pure Python library implementing the Data Access Protocol. pydap_responses_matlab allows Pydap server to deliver data to Matlab. -</longdescription> + </longdescription> <upstream> <remote-id type="pypi">pydap.responses.matlab</remote-id> </upstream> diff --git a/sci-geosciences/pydap_responses_netcdf/metadata.xml b/sci-geosciences/pydap_responses_netcdf/metadata.xml index 5961ef322..79bf09ab5 100644 --- a/sci-geosciences/pydap_responses_netcdf/metadata.xml +++ b/sci-geosciences/pydap_responses_netcdf/metadata.xml @@ -1,4 +1,4 @@ -<?xml version="1.0" encoding="UTF-8"?> +<?xml version='1.0' encoding='UTF-8'?> <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <maintainer type="person"> @@ -12,7 +12,7 @@ <longdescription lang="en"> Pydap is a pure Python library implementing the Data Access Protocol. pydap_responses_netcdf allows Pydap server to serve NetCDF formatted files. -</longdescription> + </longdescription> <upstream> <remote-id type="pypi">pydap.responses.netcdf</remote-id> </upstream> diff --git a/sci-geosciences/pydap_responses_wms/metadata.xml b/sci-geosciences/pydap_responses_wms/metadata.xml index 412e8bec8..3f0ffe7a7 100644 --- a/sci-geosciences/pydap_responses_wms/metadata.xml +++ b/sci-geosciences/pydap_responses_wms/metadata.xml @@ -1,4 +1,4 @@ -<?xml version="1.0" encoding="UTF-8"?> +<?xml version='1.0' encoding='UTF-8'?> <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <maintainer type="person"> @@ -13,7 +13,7 @@ Pydap is a pure Python library implementing the Data Access Protocol. pydap_responses_wms allows Pydap server to deliver maps via Web Mapping Service protocol. -</longdescription> + </longdescription> <upstream> <remote-id type="pypi">pydap.responses.wms</remote-id> </upstream> diff --git a/sci-geosciences/pydap_responses_xls/metadata.xml b/sci-geosciences/pydap_responses_xls/metadata.xml index 635bb948a..95202601c 100644 --- a/sci-geosciences/pydap_responses_xls/metadata.xml +++ b/sci-geosciences/pydap_responses_xls/metadata.xml @@ -1,4 +1,4 @@ -<?xml version="1.0" encoding="UTF-8"?> +<?xml version='1.0' encoding='UTF-8'?> <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <maintainer type="person"> @@ -13,7 +13,7 @@ Pydap is a pure Python library implementing the Data Access Protocol. pydap_responses_xls allows Pydap server to deliver an Excel file of the data. -</longdescription> + </longdescription> <upstream> <remote-id type="pypi">pydap.responses.xls</remote-id> </upstream> diff --git a/sci-libs/armadillo/metadata.xml b/sci-libs/armadillo/metadata.xml index 9c376182e..140530ac3 100644 --- a/sci-libs/armadillo/metadata.xml +++ b/sci-libs/armadillo/metadata.xml @@ -1,4 +1,4 @@ -<?xml version="1.0" encoding="UTF-8"?> +<?xml version='1.0' encoding='UTF-8'?> <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <maintainer type="project"> @@ -16,7 +16,7 @@ combine several operations into one and reduce (or eliminate) the need for temporaries. This is accomplished through recursive templates and template meta-programming. -</longdescription> + </longdescription> <use> <flag name="atlas"> Link with <pkg>sci-libs/atlas</pkg> libraries for cblas and diff --git a/sci-libs/asl/metadata.xml b/sci-libs/asl/metadata.xml index 7170c1d21..406d94b4d 100644 --- a/sci-libs/asl/metadata.xml +++ b/sci-libs/asl/metadata.xml @@ -1,4 +1,4 @@ -<?xml version="1.0" encoding="UTF-8"?> +<?xml version='1.0' encoding='UTF-8'?> <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <maintainer type="person"> @@ -27,7 +27,7 @@ fields: computational fluid dynamics, virtual sensing, industrial process data validation and reconciliation, image-guided surgery, computer-aided engineering, design space exploration, crystallography, etc. -</longdescription> + </longdescription> <use> <flag name="matlab">Matlab support with <pkg>sci-libs/matio</pkg></flag> </use> diff --git a/sci-libs/atlas/metadata.xml b/sci-libs/atlas/metadata.xml index 79b47d5ae..5fffffdf1 100644 --- a/sci-libs/atlas/metadata.xml +++ b/sci-libs/atlas/metadata.xml @@ -1,4 +1,4 @@ -<?xml version="1.0" encoding="UTF-8"?> +<?xml version='1.0' encoding='UTF-8'?> <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <maintainer type="project"> @@ -12,7 +12,7 @@ Subroutines (BLAS) for both c and F77 interfaces. It can also build a subset of the linear algebra routine LAPACK library or the full LAPACK using the reference LAPACK from Netlib. -</longdescription> + </longdescription> <use> <flag name="deprecated">Build deprecated routines</flag> <flag name="generic">Build atlas assuming a fairly generic architecture (sse2 for x86, core2 for amd64)</flag> diff --git a/sci-libs/cgnstools/metadata.xml b/sci-libs/cgnstools/metadata.xml index b0a18c553..2f9d93947 100644 --- a/sci-libs/cgnstools/metadata.xml +++ b/sci-libs/cgnstools/metadata.xml @@ -1,4 +1,4 @@ -<?xml version="1.0" encoding="UTF-8"?> +<?xml version='1.0' encoding='UTF-8'?> <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <maintainer type="project"> diff --git a/sci-libs/clblas/metadata.xml b/sci-libs/clblas/metadata.xml index cad01ed8b..7a91a3efe 100644 --- a/sci-libs/clblas/metadata.xml +++ b/sci-libs/clblas/metadata.xml @@ -1,4 +1,4 @@ -<?xml version="1.0" encoding="UTF-8"?> +<?xml version='1.0' encoding='UTF-8'?> <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <maintainer type="project"> diff --git a/sci-libs/clfft/metadata.xml b/sci-libs/clfft/metadata.xml index b331d3e41..659e5bb01 100644 --- a/sci-libs/clfft/metadata.xml +++ b/sci-libs/clfft/metadata.xml @@ -1,4 +1,4 @@ -<?xml version="1.0" encoding="UTF-8"?> +<?xml version='1.0' encoding='UTF-8'?> <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <maintainer type="person"> diff --git a/sci-libs/clrng/metadata.xml b/sci-libs/clrng/metadata.xml index 261dee59c..c6c675038 100644 --- a/sci-libs/clrng/metadata.xml +++ b/sci-libs/clrng/metadata.xml @@ -1,4 +1,4 @@ -<?xml version="1.0" encoding="UTF-8"?> +<?xml version='1.0' encoding='UTF-8'?> <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <maintainer type="project"> diff --git a/sci-libs/dealii/metadata.xml b/sci-libs/dealii/metadata.xml index d00e3daa5..056a02aab 100644 --- a/sci-libs/dealii/metadata.xml +++ b/sci-libs/dealii/metadata.xml @@ -1,4 +1,4 @@ -<?xml version="1.0" encoding="UTF-8"?> +<?xml version='1.0' encoding='UTF-8'?> <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <maintainer type="person"> diff --git a/sci-libs/elmer-eio/metadata.xml b/sci-libs/elmer-eio/metadata.xml index 74cf8e43e..cab7f518f 100644 --- a/sci-libs/elmer-eio/metadata.xml +++ b/sci-libs/elmer-eio/metadata.xml @@ -1,4 +1,4 @@ -<?xml version="1.0" encoding="UTF-8"?> +<?xml version='1.0' encoding='UTF-8'?> <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <maintainer type="project"> @@ -6,6 +6,6 @@ <name>Gentoo Science Project</name> </maintainer> <upstream> - <remote-id type="sourceforge">elmerfem.svn</remote-id> + <remote-id type="sourceforge">svn</remote-id> </upstream> </pkgmetadata> diff --git a/sci-libs/elmer-hutiter/metadata.xml b/sci-libs/elmer-hutiter/metadata.xml index 74cf8e43e..cab7f518f 100644 --- a/sci-libs/elmer-hutiter/metadata.xml +++ b/sci-libs/elmer-hutiter/metadata.xml @@ -1,4 +1,4 @@ -<?xml version="1.0" encoding="UTF-8"?> +<?xml version='1.0' encoding='UTF-8'?> <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <maintainer type="project"> @@ -6,6 +6,6 @@ <name>Gentoo Science Project</name> </maintainer> <upstream> - <remote-id type="sourceforge">elmerfem.svn</remote-id> + <remote-id type="sourceforge">svn</remote-id> </upstream> </pkgmetadata> diff --git a/sci-libs/framewave/metadata.xml b/sci-libs/framewave/metadata.xml index 51caca683..ca9638e58 100644 --- a/sci-libs/framewave/metadata.xml +++ b/sci-libs/framewave/metadata.xml @@ -1,4 +1,4 @@ -<?xml version="1.0" encoding="UTF-8"?> +<?xml version='1.0' encoding='UTF-8'?> <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <maintainer type="project"> diff --git a/sci-libs/geom/metadata.xml b/sci-libs/geom/metadata.xml index d322fedbb..1c94e0081 100644 --- a/sci-libs/geom/metadata.xml +++ b/sci-libs/geom/metadata.xml @@ -1,4 +1,4 @@ -<?xml version="1.0" encoding="UTF-8"?> +<?xml version='1.0' encoding='UTF-8'?> <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <maintainer type="project"> diff --git a/sci-libs/ghmm/metadata.xml b/sci-libs/ghmm/metadata.xml index e6d6c6c89..985e58deb 100644 --- a/sci-libs/ghmm/metadata.xml +++ b/sci-libs/ghmm/metadata.xml @@ -1,4 +1,4 @@ -<?xml version="1.0" encoding="UTF-8"?> +<?xml version='1.0' encoding='UTF-8'?> <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <maintainer type="project"> diff --git a/sci-libs/htslib/metadata.xml b/sci-libs/htslib/metadata.xml index 5b953af48..49735ee17 100644 --- a/sci-libs/htslib/metadata.xml +++ b/sci-libs/htslib/metadata.xml @@ -1,4 +1,4 @@ -<?xml version="1.0" encoding="UTF-8"?> +<?xml version='1.0' encoding='UTF-8'?> <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <maintainer type="project"> diff --git a/sci-libs/io_lib/metadata.xml b/sci-libs/io_lib/metadata.xml index a88279ec5..9012caf9b 100644 --- a/sci-libs/io_lib/metadata.xml +++ b/sci-libs/io_lib/metadata.xml @@ -1,4 +1,4 @@ -<?xml version="1.0" encoding="UTF-8"?> +<?xml version='1.0' encoding='UTF-8'?> <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <maintainer type="project"> @@ -10,7 +10,7 @@ general purpose trace file (and Experiment File) reading interface. The programmer simply calls the (eg) read_reading to create a "Read" C structure with the data loaded into memory. -</longdescription> + </longdescription> <upstream> <remote-id type="sourceforge">staden</remote-id> </upstream> diff --git a/sci-libs/itk/metadata.xml b/sci-libs/itk/metadata.xml index 85453b5c2..b7fbbe52f 100644 --- a/sci-libs/itk/metadata.xml +++ b/sci-libs/itk/metadata.xml @@ -1,4 +1,4 @@ -<?xml version="1.0" encoding="UTF-8"?> +<?xml version='1.0' encoding='UTF-8'?> <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <maintainer type="project"> @@ -12,7 +12,7 @@ Insight Segmentation and Registration Toolkit (ITK) is a library that provides developers with an extensive suite of tools for image analysis. -</longdescription> + </longdescription> <use> <flag name="itkv3compat">Enable compatibility with ITK version 3</flag> <flag name="review">Enable compilation of methods under review</flag> diff --git a/sci-libs/k3match/metadata.xml b/sci-libs/k3match/metadata.xml index 9165eac65..8e26a7cc2 100644 --- a/sci-libs/k3match/metadata.xml +++ b/sci-libs/k3match/metadata.xml @@ -1,4 +1,4 @@ -<?xml version="1.0" encoding="UTF-8"?> +<?xml version='1.0' encoding='UTF-8'?> <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <maintainer type="person"> @@ -9,7 +9,4 @@ <email>sci@gentoo.org</email> <name>Gentoo Science Project</name> </maintainer> - <upstream> - <remote-id type="github">pschella/k3match</remote-id> - </upstream> </pkgmetadata> diff --git a/sci-libs/lapackpp/metadata.xml b/sci-libs/lapackpp/metadata.xml index b3d88baf7..af87df9d1 100644 --- a/sci-libs/lapackpp/metadata.xml +++ b/sci-libs/lapackpp/metadata.xml @@ -1,4 +1,4 @@ -<?xml version="1.0" encoding="UTF-8"?> +<?xml version='1.0' encoding='UTF-8'?> <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <maintainer type="project"> @@ -15,8 +15,8 @@ include all of the capabilities of original f77 LAPACK. Emphasis is given to routines for solving linear systems consisting of non-symmetric matrices, symmetric positive definite systems, and solving linear - least-square systems. -</longdescription> + least-square systems. + </longdescription> <upstream> <remote-id type="sourceforge">lapackpp</remote-id> </upstream> diff --git a/sci-libs/libcgnsoo/metadata.xml b/sci-libs/libcgnsoo/metadata.xml index b501da7f8..9954178df 100644 --- a/sci-libs/libcgnsoo/metadata.xml +++ b/sci-libs/libcgnsoo/metadata.xml @@ -1,4 +1,4 @@ -<?xml version="1.0" encoding="UTF-8"?> +<?xml version='1.0' encoding='UTF-8'?> <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <maintainer type="project"> diff --git a/sci-libs/libmaus/metadata.xml b/sci-libs/libmaus/metadata.xml index 1541e62b3..daa058d7d 100644 --- a/sci-libs/libmaus/metadata.xml +++ b/sci-libs/libmaus/metadata.xml @@ -1,4 +1,4 @@ -<?xml version="1.0" encoding="UTF-8"?> +<?xml version='1.0' encoding='UTF-8'?> <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <maintainer type="project"> @@ -13,7 +13,7 @@ I/O classes (single byte and UTF-8) text indexing classes (suffix and LCP array, fulltext and minute (FM), ...) BAM sequence alignment files input/output (simple and collating) and many lower level support classes. -</longdescription> + </longdescription> <upstream> <remote-id type="github">gt1/libmaus</remote-id> </upstream> diff --git a/sci-libs/libmaus2/metadata.xml b/sci-libs/libmaus2/metadata.xml index 1541e62b3..daa058d7d 100644 --- a/sci-libs/libmaus2/metadata.xml +++ b/sci-libs/libmaus2/metadata.xml @@ -1,4 +1,4 @@ -<?xml version="1.0" encoding="UTF-8"?> +<?xml version='1.0' encoding='UTF-8'?> <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <maintainer type="project"> @@ -13,7 +13,7 @@ I/O classes (single byte and UTF-8) text indexing classes (suffix and LCP array, fulltext and minute (FM), ...) BAM sequence alignment files input/output (simple and collating) and many lower level support classes. -</longdescription> + </longdescription> <upstream> <remote-id type="github">gt1/libmaus</remote-id> </upstream> diff --git a/sci-libs/libsc/metadata.xml b/sci-libs/libsc/metadata.xml index 21ede2e1f..eb239a19e 100644 --- a/sci-libs/libsc/metadata.xml +++ b/sci-libs/libsc/metadata.xml @@ -1,4 +1,4 @@ -<?xml version="1.0" encoding="UTF-8"?> +<?xml version='1.0' encoding='UTF-8'?> <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <maintainer type="person"> diff --git a/sci-libs/libsufr/metadata.xml b/sci-libs/libsufr/metadata.xml index b3a575f0a..77b842c6e 100644 --- a/sci-libs/libsufr/metadata.xml +++ b/sci-libs/libsufr/metadata.xml @@ -1,4 +1,4 @@ -<?xml version="1.0" encoding="UTF-8"?> +<?xml version='1.0' encoding='UTF-8'?> <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <maintainer type="person"> diff --git a/sci-libs/lwpr/metadata.xml b/sci-libs/lwpr/metadata.xml index d7f4e4aad..3ddf78275 100644 --- a/sci-libs/lwpr/metadata.xml +++ b/sci-libs/lwpr/metadata.xml @@ -1,4 +1,4 @@ -<?xml version="1.0" encoding="UTF-8"?> +<?xml version='1.0' encoding='UTF-8'?> <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <maintainer type="project"> @@ -13,7 +13,7 @@ regressions in selected directions in input space. A locally weighted variant of Partial Least Squares (PLS) is employed for doing the dimensionality reduction. -</longdescription> + </longdescription> <use> <flag name="octave">Add <pkg>sci-mathematics/octave</pkg> support</flag> </use> diff --git a/sci-libs/matc/metadata.xml b/sci-libs/matc/metadata.xml index 271c39301..9a3b4d3ec 100644 --- a/sci-libs/matc/metadata.xml +++ b/sci-libs/matc/metadata.xml @@ -1,4 +1,4 @@ -<?xml version="1.0" encoding="UTF-8"?> +<?xml version='1.0' encoding='UTF-8'?> <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <maintainer type="project"> @@ -7,6 +7,6 @@ </maintainer> <upstream> <remote-id type="github">ElmerCSC/elmerfem</remote-id> - <remote-id type="sourceforge">elmerfem.svn</remote-id> + <remote-id type="sourceforge">svn</remote-id> </upstream> </pkgmetadata> diff --git a/sci-libs/nibabel/metadata.xml b/sci-libs/nibabel/metadata.xml index 776617edf..be9e6a4cc 100644 --- a/sci-libs/nibabel/metadata.xml +++ b/sci-libs/nibabel/metadata.xml @@ -1,4 +1,4 @@ -<?xml version="1.0" encoding="UTF-8"?> +<?xml version='1.0' encoding='UTF-8'?> <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <maintainer type="person"> diff --git a/sci-libs/nipy/metadata.xml b/sci-libs/nipy/metadata.xml index 511564029..940d59042 100644 --- a/sci-libs/nipy/metadata.xml +++ b/sci-libs/nipy/metadata.xml @@ -1,4 +1,4 @@ -<?xml version="1.0" encoding="UTF-8"?> +<?xml version='1.0' encoding='UTF-8'?> <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <maintainer type="person"> @@ -11,7 +11,7 @@ </maintainer> <longdescription lang="en"> NIPY is a python project for analysis of structural and functional neuroimaging data. -</longdescription> + </longdescription> <upstream> <remote-id type="pypi">nipy</remote-id> </upstream> diff --git a/sci-libs/nipype/metadata.xml b/sci-libs/nipype/metadata.xml index 8e5a54081..f63021cf6 100644 --- a/sci-libs/nipype/metadata.xml +++ b/sci-libs/nipype/metadata.xml @@ -22,7 +22,7 @@ in a high-level language and addressing limitations of existing pipeline systems. </longdescription> <upstream> - <remote-id type="sourceforge">nipy</remote-id> <remote-id type="github">nipy/nipype</remote-id> + <remote-id type="sourceforge">nipy</remote-id> </upstream> </pkgmetadata> diff --git a/sci-libs/o2scl/metadata.xml b/sci-libs/o2scl/metadata.xml index 15261a796..a4a37b48d 100644 --- a/sci-libs/o2scl/metadata.xml +++ b/sci-libs/o2scl/metadata.xml @@ -1,4 +1,4 @@ -<?xml version="1.0" encoding="UTF-8"?> +<?xml version='1.0' encoding='UTF-8'?> <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <maintainer type="project"> @@ -11,7 +11,7 @@ GSL and CERNLIB and two sub-libraries: thermodynamics of ideal and nearly-ideal particles with quantum statistics and e quations of state for finite density relevant for neutron stars. -</longdescription> + </longdescription> <upstream> <remote-id type="sourceforge">o2scl</remote-id> </upstream> diff --git a/sci-libs/openblas/metadata.xml b/sci-libs/openblas/metadata.xml index 2bf0b4229..1f64b9df9 100644 --- a/sci-libs/openblas/metadata.xml +++ b/sci-libs/openblas/metadata.xml @@ -1,4 +1,4 @@ -<?xml version="1.0" encoding="UTF-8"?> +<?xml version='1.0' encoding='UTF-8'?> <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <maintainer type="project"> diff --git a/sci-libs/p4est/metadata.xml b/sci-libs/p4est/metadata.xml index 35ac42b01..a7e30547b 100644 --- a/sci-libs/p4est/metadata.xml +++ b/sci-libs/p4est/metadata.xml @@ -1,4 +1,4 @@ -<?xml version="1.0" encoding="UTF-8"?> +<?xml version='1.0' encoding='UTF-8'?> <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <maintainer type="person"> diff --git a/sci-libs/pagmo/metadata.xml b/sci-libs/pagmo/metadata.xml index 23ef3708a..744582709 100644 --- a/sci-libs/pagmo/metadata.xml +++ b/sci-libs/pagmo/metadata.xml @@ -1,4 +1,4 @@ -<?xml version="1.0" encoding="UTF-8"?> +<?xml version='1.0' encoding='UTF-8'?> <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <maintainer type="project"> diff --git a/sci-libs/pg2plplot/metadata.xml b/sci-libs/pg2plplot/metadata.xml index a5b8e410d..30b426c5c 100644 --- a/sci-libs/pg2plplot/metadata.xml +++ b/sci-libs/pg2plplot/metadata.xml @@ -1,4 +1,4 @@ -<?xml version="1.0" encoding="UTF-8"?> +<?xml version='1.0' encoding='UTF-8'?> <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <maintainer type="person"> @@ -12,7 +12,7 @@ <longdescription> PG2PLplot is code intended to help the transition from Fortran code linked against PGPlot to linking it against PLplot. -</longdescription> + </longdescription> <upstream> <remote-id type="sourceforge">pg2plplot</remote-id> </upstream> diff --git a/sci-libs/pydicom/metadata.xml b/sci-libs/pydicom/metadata.xml index 8d1c81632..b38f42e10 100644 --- a/sci-libs/pydicom/metadata.xml +++ b/sci-libs/pydicom/metadata.xml @@ -1,4 +1,4 @@ -<?xml version="1.0" encoding="UTF-8"?> +<?xml version='1.0' encoding='UTF-8'?> <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <maintainer type="project"> diff --git a/sci-libs/rdkit/metadata.xml b/sci-libs/rdkit/metadata.xml index e612e1080..92af8f7f1 100644 --- a/sci-libs/rdkit/metadata.xml +++ b/sci-libs/rdkit/metadata.xml @@ -1,4 +1,4 @@ -<?xml version="1.0" encoding="UTF-8"?> +<?xml version='1.0' encoding='UTF-8'?> <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <maintainer type="person"> diff --git a/sci-libs/scikits_image/metadata.xml b/sci-libs/scikits_image/metadata.xml index 8e05ce394..f88372407 100644 --- a/sci-libs/scikits_image/metadata.xml +++ b/sci-libs/scikits_image/metadata.xml @@ -1,4 +1,4 @@ -<?xml version="1.0" encoding="UTF-8"?> +<?xml version='1.0' encoding='UTF-8'?> <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <maintainer type="project"> @@ -10,13 +10,10 @@ algorithms for use with Python and NumPy. While SciPy’s ndimage provides low-level manipulation, scikits.image centres around algorithms and applications. -</longdescription> + </longdescription> <use> <flag name="freeimage">Enable support for image i/o via - <pkg>media-libs/freeimage</pkg></flag> + <pkg>media-libs/freeimage</pkg></flag> <flag name="pyamg">Enable support for algebraic solvers via <pkg>dev-python/pyamg</pkg></flag> </use> - <upstream> - <remote-id type="pypi">scikit-image</remote-id> - </upstream> </pkgmetadata> diff --git a/sci-libs/spglib/metadata.xml b/sci-libs/spglib/metadata.xml index 4623ab68c..a37ff6fea 100644 --- a/sci-libs/spglib/metadata.xml +++ b/sci-libs/spglib/metadata.xml @@ -1,4 +1,4 @@ -<?xml version="1.0" encoding="UTF-8"?> +<?xml version='1.0' encoding='UTF-8'?> <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <maintainer type="person"> @@ -13,6 +13,6 @@ Spglib is a C library for finding and handling crystal symmetries. </longdescription> <upstream> - <remote-id type="sourceforge">spglib</remote-id> + <remote-id type="sourceforge">downloads</remote-id> </upstream> </pkgmetadata> diff --git a/sci-libs/starparse/metadata.xml b/sci-libs/starparse/metadata.xml index 62e9e440f..1aad99e72 100644 --- a/sci-libs/starparse/metadata.xml +++ b/sci-libs/starparse/metadata.xml @@ -1,4 +1,4 @@ -<?xml version="1.0" encoding="UTF-8"?> +<?xml version='1.0' encoding='UTF-8'?> <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <maintainer type="project"> diff --git a/sci-libs/symengine/metadata.xml b/sci-libs/symengine/metadata.xml index 398b34ee0..59ecfed71 100644 --- a/sci-libs/symengine/metadata.xml +++ b/sci-libs/symengine/metadata.xml @@ -1,4 +1,4 @@ -<?xml version="1.0" encoding="UTF-8"?> +<?xml version='1.0' encoding='UTF-8'?> <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <maintainer type="person"> @@ -12,7 +12,7 @@ <upstream> <remote-id type="github">sympy/symengine</remote-id> </upstream> -<use> - <flag name="boost">Add support for boost (<pkg>dev-libs/boost</pkg>)</flag> -</use> + <use> + <flag name="boost">Add support for boost (<pkg>dev-libs/boost</pkg>)</flag> + </use> </pkgmetadata> diff --git a/sci-libs/vxl/metadata.xml b/sci-libs/vxl/metadata.xml index 861740f90..ddb4bcd85 100644 --- a/sci-libs/vxl/metadata.xml +++ b/sci-libs/vxl/metadata.xml @@ -1,4 +1,4 @@ -<?xml version="1.0" encoding="UTF-8"?> +<?xml version='1.0' encoding='UTF-8'?> <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <maintainer type="project"> diff --git a/sci-libs/wannier90/metadata.xml b/sci-libs/wannier90/metadata.xml index 425b19557..ad1510a0c 100644 --- a/sci-libs/wannier90/metadata.xml +++ b/sci-libs/wannier90/metadata.xml @@ -1,4 +1,4 @@ -<?xml version="1.0" encoding="UTF-8"?> +<?xml version='1.0' encoding='UTF-8'?> <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <maintainer type="project"> @@ -16,7 +16,7 @@ as well as its packaging into the Debian and Ubuntu distributions. </longdescription> <upstream> - <doc>http://www.wannier.org/</doc> - <remote-id type="launchpad">wannier90</remote-id> + <doc>http://www.wannier.org/</doc> + <remote-id type="launchpad">wannier90</remote-id> </upstream> </pkgmetadata> diff --git a/sci-libs/xraylib/metadata.xml b/sci-libs/xraylib/metadata.xml index bac49d7d6..afbaa48db 100644 --- a/sci-libs/xraylib/metadata.xml +++ b/sci-libs/xraylib/metadata.xml @@ -1,4 +1,4 @@ -<?xml version="1.0" encoding="UTF-8"?> +<?xml version='1.0' encoding='UTF-8'?> <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <maintainer type="person"> diff --git a/sci-libs/zarja/metadata.xml b/sci-libs/zarja/metadata.xml index e13004628..65abbc3a1 100644 --- a/sci-libs/zarja/metadata.xml +++ b/sci-libs/zarja/metadata.xml @@ -1,4 +1,4 @@ -<?xml version="1.0" encoding="UTF-8"?> +<?xml version='1.0' encoding='UTF-8'?> <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <maintainer type="project"> @@ -9,7 +9,7 @@ Zarja is open-source library that allows to make multi-agent simulations on graphs. Its functionality was proved in Classical or Quantum mechanical models. -</longdescription> + </longdescription> <upstream> <remote-id type="sourceforge">zarja</remote-id> </upstream> diff --git a/sci-mathematics/acl2/metadata.xml b/sci-mathematics/acl2/metadata.xml index 24fc428b4..efecc286f 100644 --- a/sci-mathematics/acl2/metadata.xml +++ b/sci-mathematics/acl2/metadata.xml @@ -1,4 +1,4 @@ -<?xml version="1.0" encoding="UTF-8"?> +<?xml version='1.0' encoding='UTF-8'?> <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <maintainer type="person"> @@ -15,11 +15,11 @@ ACL2 is both a programming language in which you can model computer systems and a tool to help you prove properties of those models. ACL2 is part of the Boyer-Moore family of provers, for which its authors have received the 2005 ACM Software System Award. - </longdescription> + </longdescription> <use> <flag name="books"> build community books, the canonical collection of open-source libraries - </flag> + </flag> </use> <upstream> <remote-id type="github">acl2-devel/acl2-devel</remote-id> diff --git a/sci-mathematics/burrtools/metadata.xml b/sci-mathematics/burrtools/metadata.xml index 584b02f43..12aa01e21 100644 --- a/sci-mathematics/burrtools/metadata.xml +++ b/sci-mathematics/burrtools/metadata.xml @@ -1,4 +1,4 @@ -<?xml version="1.0" encoding="UTF-8"?> +<?xml version='1.0' encoding='UTF-8'?> <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <maintainer type="project"> @@ -10,7 +10,7 @@ Namely puzzles that are made out of square or dice shaped units, spheres or prisms with an equilateral triangle as base and where the pieces are also aligned along those grids in the solutions. -</longdescription> + </longdescription> <upstream> <remote-id type="sourceforge">burrtools</remote-id> </upstream> diff --git a/sci-mathematics/cipi/metadata.xml b/sci-mathematics/cipi/metadata.xml index 5099b3389..1d7b2e537 100644 --- a/sci-mathematics/cipi/metadata.xml +++ b/sci-mathematics/cipi/metadata.xml @@ -1,4 +1,4 @@ -<?xml version="1.0" encoding="UTF-8"?> +<?xml version='1.0' encoding='UTF-8'?> <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <maintainer type="person"> @@ -12,7 +12,7 @@ <longdescription lang="en"> cipi is a threaded implementation of iterative proportional fitting. It is used to compute information projections iteratively. -</longdescription> + </longdescription> <upstream> <remote-id type="github">tom111/cipi</remote-id> </upstream> diff --git a/sci-mathematics/dolfin/metadata.xml b/sci-mathematics/dolfin/metadata.xml index c45db3d3e..48b4594a3 100644 --- a/sci-mathematics/dolfin/metadata.xml +++ b/sci-mathematics/dolfin/metadata.xml @@ -20,7 +20,7 @@ DOLFIN is the C++/Python interface of FEniCS, providing a consistent PSE (Proble <flag name="vtk">Adds support for the visualization toolkit <pkg>sci-libs/vtk</pkg></flag> </use> <upstream> - <remote-id type="launchpad">dolfin</remote-id> <remote-id type="bitbucket">fenics-project/dolfin</remote-id> + <remote-id type="launchpad">dolfin</remote-id> </upstream> </pkgmetadata> diff --git a/sci-mathematics/gambit/metadata.xml b/sci-mathematics/gambit/metadata.xml index 40fbb61f4..14f19d7ee 100644 --- a/sci-mathematics/gambit/metadata.xml +++ b/sci-mathematics/gambit/metadata.xml @@ -1,4 +1,4 @@ -<?xml version="1.0" encoding="UTF-8"?> +<?xml version='1.0' encoding='UTF-8'?> <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <maintainer type="person"> @@ -11,8 +11,8 @@ </maintainer> <use> <flag name="X"> - Enable gui support using wxWidgets. - </flag> + Enable gui support using wxWidgets. + </flag> </use> <upstream> <remote-id type="sourceforge">gambit</remote-id> diff --git a/sci-mathematics/kayali/metadata.xml b/sci-mathematics/kayali/metadata.xml index c6324364b..334e81c07 100644 --- a/sci-mathematics/kayali/metadata.xml +++ b/sci-mathematics/kayali/metadata.xml @@ -1,4 +1,4 @@ -<?xml version="1.0" encoding="UTF-8"?> +<?xml version='1.0' encoding='UTF-8'?> <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <maintainer type="project"> @@ -10,7 +10,7 @@ kayali is a Qt based Computer Algebra System (CAS) that can also be used as an advanced replacement for KDE KCalc. It is essentially a front end GUI forMaxima (and is easily extended to other CAS back-ends) and Gnuplot. -</longdescription> + </longdescription> <upstream> <remote-id type="sourceforge">kayali</remote-id> </upstream> diff --git a/sci-mathematics/mdp/metadata.xml b/sci-mathematics/mdp/metadata.xml index 419ace4b8..bca69383e 100644 --- a/sci-mathematics/mdp/metadata.xml +++ b/sci-mathematics/mdp/metadata.xml @@ -1,4 +1,4 @@ -<?xml version="1.0" encoding="UTF-8"?> +<?xml version='1.0' encoding='UTF-8'?> <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <maintainer type="person"> diff --git a/sci-mathematics/netgen/metadata.xml b/sci-mathematics/netgen/metadata.xml index 7811ed698..78d0a170b 100644 --- a/sci-mathematics/netgen/metadata.xml +++ b/sci-mathematics/netgen/metadata.xml @@ -1,4 +1,4 @@ -<?xml version="1.0" encoding="UTF-8"?> +<?xml version='1.0' encoding='UTF-8'?> <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <maintainer type="project"> diff --git a/sci-mathematics/open-axiom/metadata.xml b/sci-mathematics/open-axiom/metadata.xml index 54d97e0a6..130efc546 100644 --- a/sci-mathematics/open-axiom/metadata.xml +++ b/sci-mathematics/open-axiom/metadata.xml @@ -1,4 +1,4 @@ -<?xml version="1.0" encoding="UTF-8"?> +<?xml version='1.0' encoding='UTF-8'?> <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <maintainer type="project"> @@ -10,7 +10,7 @@ numerical computations. It offers an interactive environment, an expressive programming language, a compiler, a large set of mathematical libraries of interest to researchers and practitioners of computational sciences. -</longdescription> + </longdescription> <upstream> <remote-id type="sourceforge">open-axiom</remote-id> </upstream> diff --git a/sci-mathematics/pulp/metadata.xml b/sci-mathematics/pulp/metadata.xml index c2c5bcc78..83aff6f44 100644 --- a/sci-mathematics/pulp/metadata.xml +++ b/sci-mathematics/pulp/metadata.xml @@ -1,4 +1,4 @@ -<?xml version="1.0" encoding="UTF-8"?> +<?xml version='1.0' encoding='UTF-8'?> <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <maintainer type="project"> diff --git a/sci-mathematics/ufc/metadata.xml b/sci-mathematics/ufc/metadata.xml index c26ddd0fe..b3a913d46 100644 --- a/sci-mathematics/ufc/metadata.xml +++ b/sci-mathematics/ufc/metadata.xml @@ -1,4 +1,4 @@ -<?xml version="1.0" encoding="UTF-8"?> +<?xml version='1.0' encoding='UTF-8'?> <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <maintainer type="project"> diff --git a/sci-mathematics/yorick/metadata.xml b/sci-mathematics/yorick/metadata.xml index 47fd43db6..8c87d53b3 100644 --- a/sci-mathematics/yorick/metadata.xml +++ b/sci-mathematics/yorick/metadata.xml @@ -1,4 +1,4 @@ -<?xml version="1.0" encoding="UTF-8"?> +<?xml version='1.0' encoding='UTF-8'?> <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <maintainer type="person"> @@ -13,7 +13,7 @@ Yorick is a language for scientific computing and rapid prototyping, similar to matlab. It can easily call C functions and libraries, has multidimensional arrays and built-in plot functions. -</longdescription> + </longdescription> <upstream> <remote-id type="sourceforge">yorick</remote-id> </upstream> diff --git a/sci-misc/elmer-elmergrid/metadata.xml b/sci-misc/elmer-elmergrid/metadata.xml index 74cf8e43e..cab7f518f 100644 --- a/sci-misc/elmer-elmergrid/metadata.xml +++ b/sci-misc/elmer-elmergrid/metadata.xml @@ -1,4 +1,4 @@ -<?xml version="1.0" encoding="UTF-8"?> +<?xml version='1.0' encoding='UTF-8'?> <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <maintainer type="project"> @@ -6,6 +6,6 @@ <name>Gentoo Science Project</name> </maintainer> <upstream> - <remote-id type="sourceforge">elmerfem.svn</remote-id> + <remote-id type="sourceforge">svn</remote-id> </upstream> </pkgmetadata> diff --git a/sci-misc/elmer-fem/metadata.xml b/sci-misc/elmer-fem/metadata.xml index 74cf8e43e..cab7f518f 100644 --- a/sci-misc/elmer-fem/metadata.xml +++ b/sci-misc/elmer-fem/metadata.xml @@ -1,4 +1,4 @@ -<?xml version="1.0" encoding="UTF-8"?> +<?xml version='1.0' encoding='UTF-8'?> <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <maintainer type="project"> @@ -6,6 +6,6 @@ <name>Gentoo Science Project</name> </maintainer> <upstream> - <remote-id type="sourceforge">elmerfem.svn</remote-id> + <remote-id type="sourceforge">svn</remote-id> </upstream> </pkgmetadata> diff --git a/sci-misc/elmer-front/metadata.xml b/sci-misc/elmer-front/metadata.xml index 74cf8e43e..cab7f518f 100644 --- a/sci-misc/elmer-front/metadata.xml +++ b/sci-misc/elmer-front/metadata.xml @@ -1,4 +1,4 @@ -<?xml version="1.0" encoding="UTF-8"?> +<?xml version='1.0' encoding='UTF-8'?> <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <maintainer type="project"> @@ -6,6 +6,6 @@ <name>Gentoo Science Project</name> </maintainer> <upstream> - <remote-id type="sourceforge">elmerfem.svn</remote-id> + <remote-id type="sourceforge">svn</remote-id> </upstream> </pkgmetadata> diff --git a/sci-misc/elmer-meshgen2d/metadata.xml b/sci-misc/elmer-meshgen2d/metadata.xml index 74cf8e43e..cab7f518f 100644 --- a/sci-misc/elmer-meshgen2d/metadata.xml +++ b/sci-misc/elmer-meshgen2d/metadata.xml @@ -1,4 +1,4 @@ -<?xml version="1.0" encoding="UTF-8"?> +<?xml version='1.0' encoding='UTF-8'?> <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <maintainer type="project"> @@ -6,6 +6,6 @@ <name>Gentoo Science Project</name> </maintainer> <upstream> - <remote-id type="sourceforge">elmerfem.svn</remote-id> + <remote-id type="sourceforge">svn</remote-id> </upstream> </pkgmetadata> diff --git a/sci-misc/elmer-post/metadata.xml b/sci-misc/elmer-post/metadata.xml index 74cf8e43e..cab7f518f 100644 --- a/sci-misc/elmer-post/metadata.xml +++ b/sci-misc/elmer-post/metadata.xml @@ -1,4 +1,4 @@ -<?xml version="1.0" encoding="UTF-8"?> +<?xml version='1.0' encoding='UTF-8'?> <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <maintainer type="project"> @@ -6,6 +6,6 @@ <name>Gentoo Science Project</name> </maintainer> <upstream> - <remote-id type="sourceforge">elmerfem.svn</remote-id> + <remote-id type="sourceforge">svn</remote-id> </upstream> </pkgmetadata> diff --git a/sci-misc/hfst/metadata.xml b/sci-misc/hfst/metadata.xml index 4be3eac8d..ea7f0f8ea 100644 --- a/sci-misc/hfst/metadata.xml +++ b/sci-misc/hfst/metadata.xml @@ -1,4 +1,4 @@ -<?xml version="1.0" encoding="UTF-8"?> +<?xml version='1.0' encoding='UTF-8'?> <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <longdescription lang="en"> diff --git a/sci-misc/irstlm/metadata.xml b/sci-misc/irstlm/metadata.xml index cca53d192..39f066e5f 100644 --- a/sci-misc/irstlm/metadata.xml +++ b/sci-misc/irstlm/metadata.xml @@ -1,4 +1,4 @@ -<?xml version="1.0" encoding="UTF-8"?> +<?xml version='1.0' encoding='UTF-8'?> <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <maintainer type="person"> @@ -10,7 +10,7 @@ The software has been integrated into a popular open source Statistical Machine Translation decoder called Moses, and is compatible with language models created with other tools, such as the SRILM Tooolkit. - </longdescription> + </longdescription> <upstream> <remote-id type="github">irstlm-team/irstlm</remote-id> </upstream> diff --git a/sci-misc/jwnl/metadata.xml b/sci-misc/jwnl/metadata.xml index a1741675c..252d8fec2 100644 --- a/sci-misc/jwnl/metadata.xml +++ b/sci-misc/jwnl/metadata.xml @@ -1,4 +1,4 @@ -<?xml version="1.0" encoding="UTF-8"?> +<?xml version='1.0' encoding='UTF-8'?> <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <maintainer type="person"> @@ -7,7 +7,7 @@ <longdescription> Java based programming interface for accessing wordnet style dictionary data. -</longdescription> + </longdescription> <upstream> <remote-id type="sourceforge">jwordnet</remote-id> </upstream> diff --git a/sci-misc/kaldi/metadata.xml b/sci-misc/kaldi/metadata.xml index e441381a1..277ec0c79 100644 --- a/sci-misc/kaldi/metadata.xml +++ b/sci-misc/kaldi/metadata.xml @@ -1,4 +1,4 @@ -<?xml version="1.0" encoding="UTF-8"?> +<?xml version='1.0' encoding='UTF-8'?> <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <maintainer type="person"> diff --git a/sci-misc/nltk/metadata.xml b/sci-misc/nltk/metadata.xml index ef430211f..d1266bc46 100644 --- a/sci-misc/nltk/metadata.xml +++ b/sci-misc/nltk/metadata.xml @@ -1,4 +1,4 @@ -<?xml version="1.0" encoding="UTF-8"?> +<?xml version='1.0' encoding='UTF-8'?> <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <maintainer type="person"> @@ -7,7 +7,7 @@ <longdescription> NLTK is collection of natural language tools written in python language. It also contains huge corpora. -</longdescription> + </longdescription> <upstream> <remote-id type="github">nltk/nltk</remote-id> </upstream> diff --git a/sci-misc/opennlp-maxent/metadata.xml b/sci-misc/opennlp-maxent/metadata.xml index 63d00026d..f27469ae0 100644 --- a/sci-misc/opennlp-maxent/metadata.xml +++ b/sci-misc/opennlp-maxent/metadata.xml @@ -1,4 +1,4 @@ -<?xml version="1.0" encoding="UTF-8"?> +<?xml version='1.0' encoding='UTF-8'?> <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <maintainer type="person"> @@ -7,7 +7,7 @@ <longdescription> Implementation of statistical classification using maximum entropy models in opennlp framework. -</longdescription> + </longdescription> <upstream> <remote-id type="sourceforge">maxent</remote-id> </upstream> diff --git a/sci-misc/praat/metadata.xml b/sci-misc/praat/metadata.xml index 1778e5ff2..c65ab9204 100644 --- a/sci-misc/praat/metadata.xml +++ b/sci-misc/praat/metadata.xml @@ -1,4 +1,4 @@ -<?xml version="1.0" encoding="UTF-8"?> +<?xml version='1.0' encoding='UTF-8'?> <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <maintainer type="person"> diff --git a/sci-misc/pywordnet/metadata.xml b/sci-misc/pywordnet/metadata.xml index 0c1d298cd..a9ae1397f 100644 --- a/sci-misc/pywordnet/metadata.xml +++ b/sci-misc/pywordnet/metadata.xml @@ -1,4 +1,4 @@ -<?xml version="1.0" encoding="UTF-8"?> +<?xml version='1.0' encoding='UTF-8'?> <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <maintainer type="person"> @@ -6,7 +6,7 @@ </maintainer> <longdescription> Pywordnet contains python bindings to handle wordnet databases. -</longdescription> + </longdescription> <upstream> <remote-id type="sourceforge">pywordnet</remote-id> </upstream> diff --git a/sci-misc/simx/metadata.xml b/sci-misc/simx/metadata.xml index 2ceb14aaf..321ce9b3c 100644 --- a/sci-misc/simx/metadata.xml +++ b/sci-misc/simx/metadata.xml @@ -1,4 +1,4 @@ -<?xml version="1.0" encoding="UTF-8"?> +<?xml version='1.0' encoding='UTF-8'?> <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <maintainer type="project"> diff --git a/sci-physics/bigdft/metadata.xml b/sci-physics/bigdft/metadata.xml index f3648be71..17af4cae8 100644 --- a/sci-physics/bigdft/metadata.xml +++ b/sci-physics/bigdft/metadata.xml @@ -1,4 +1,4 @@ -<?xml version="1.0" encoding="UTF-8"?> +<?xml version='1.0' encoding='UTF-8'?> <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <maintainer type="project"> @@ -6,8 +6,8 @@ <name>Gentoo Physics Project</name> </maintainer> <longdescription lang="en"> -BigDFT is a DFT massively parallel electronic structure code (GPL license) using a wavelet basis set. Wavelets form a real space basis set distributed on an adaptive mesh (two levels of resolution in our implementation). GTH or HGH pseudopotentials are used to remove the core electrons. Thanks to our Poisson solver based on a Green function formalism, periodic systems, surfaces and isolated systems can be simulated with the proper boundary conditions. -</longdescription> +BigDFT is a DFT massively parallel electronic structure code (GPL license) using a wavelet basis set. Wavelets form a real space basis set distributed on an adaptive mesh (two levels of resolution in our implementation). GTH or HGH pseudopotentials are used to remove the core electrons. Thanks to our Poisson solver based on a Green function formalism, periodic systems, surfaces and isolated systems can be simulated with the proper boundary conditions. + </longdescription> <use> <flag name="cuda">Enable support for nVidia CUDA GPU acceleration</flag> <flag name="etsf_io"> diff --git a/sci-physics/clip/metadata.xml b/sci-physics/clip/metadata.xml index fab4f8637..7118946d7 100644 --- a/sci-physics/clip/metadata.xml +++ b/sci-physics/clip/metadata.xml @@ -1,4 +1,4 @@ -<?xml version="1.0" encoding="UTF-8"?> +<?xml version='1.0' encoding='UTF-8'?> <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <longdescription> diff --git a/sci-physics/elk/metadata.xml b/sci-physics/elk/metadata.xml index 7246d7075..66d2fc12b 100644 --- a/sci-physics/elk/metadata.xml +++ b/sci-physics/elk/metadata.xml @@ -1,4 +1,4 @@ -<?xml version="1.0" encoding="UTF-8"?> +<?xml version='1.0' encoding='UTF-8'?> <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <maintainer type="project"> @@ -7,17 +7,17 @@ </maintainer> <longdescription lang="en"> Elk is an all-electron full-potential linearised augmented-plane wave (FP-LAPW) code with many advanced features. Written originally at Karl-Franzens-Universität Graz as a milestone of the EXCITING EU Research and Training Network, the code is designed to be as simple as possible so that new developments in the field of density functional theory (DFT) can be added quickly and reliably. The code is freely available under the GNU General Public License. -</longdescription> + </longdescription> <use> <flag name="libxc"> Use sci-libs/libxc library of exchange-correlation functionals by ETSF. - </flag> + </flag> <flag name="perl"> Install perl scripts. - </flag> + </flag> <flag name="python"> Install python scripts. - </flag> + </flag> </use> <upstream> <remote-id type="sourceforge">elk</remote-id> diff --git a/sci-physics/genfit/metadata.xml b/sci-physics/genfit/metadata.xml index a9ebbe023..c302922f7 100644 --- a/sci-physics/genfit/metadata.xml +++ b/sci-physics/genfit/metadata.xml @@ -1,4 +1,4 @@ -<?xml version="1.0" encoding="UTF-8"?> +<?xml version='1.0' encoding='UTF-8'?> <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <maintainer type="project"> diff --git a/sci-physics/quinoa/metadata.xml b/sci-physics/quinoa/metadata.xml index 7d658f994..c5bbbd579 100644 --- a/sci-physics/quinoa/metadata.xml +++ b/sci-physics/quinoa/metadata.xml @@ -1,4 +1,4 @@ -<?xml version="1.0" encoding="UTF-8"?> +<?xml version='1.0' encoding='UTF-8'?> <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <maintainer type="person"> @@ -9,7 +9,4 @@ <email>sci-physics@gentoo.org</email> <name>Gentoo Physics Project</name> </maintainer> - <upstream> - <remote-id type="github">quinoacomputing/quinoa</remote-id> - </upstream> </pkgmetadata> diff --git a/sci-visualization/forge/metadata.xml b/sci-visualization/forge/metadata.xml index 48c30ca5c..010970cee 100644 --- a/sci-visualization/forge/metadata.xml +++ b/sci-visualization/forge/metadata.xml @@ -1,4 +1,4 @@ -<?xml version="1.0" encoding="UTF-8"?> +<?xml version='1.0' encoding='UTF-8'?> <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <maintainer type="person"> diff --git a/sci-visualization/mantid/metadata.xml b/sci-visualization/mantid/metadata.xml index 7335b8a88..b3d3b4618 100644 --- a/sci-visualization/mantid/metadata.xml +++ b/sci-visualization/mantid/metadata.xml @@ -1,4 +1,4 @@ -<?xml version="1.0" encoding="UTF-8"?> +<?xml version='1.0' encoding='UTF-8'?> <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <maintainer type="person"> @@ -15,7 +15,7 @@ Mantid has been created to manipulate and analyse neutron scattering and muon spectroscopy data, but could be applied to many other techniques. -</longdescription> + </longdescription> <use> <flag name="doc">Generate documentation with <pkg>app-doc/doxygen</pkg>, QT Assistant etc</flag> <flag name="opencascade">Use OpenCascade to show 3D models of instruments</flag> diff --git a/sci-visualization/mayavi/metadata.xml b/sci-visualization/mayavi/metadata.xml index 0bde729fe..295da5bc4 100644 --- a/sci-visualization/mayavi/metadata.xml +++ b/sci-visualization/mayavi/metadata.xml @@ -1,4 +1,4 @@ -<?xml version="1.0" encoding="UTF-8"?> +<?xml version='1.0' encoding='UTF-8'?> <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <maintainer type="project"> @@ -23,7 +23,7 @@ interactive visualizations in any other application. It may also be used as an Envisage plug-in which allows it to be embedded in other Envisage based applications natively. -</longdescription> + </longdescription> <upstream> <remote-id type="github">enthought/mayavi</remote-id> </upstream> diff --git a/sci-visualization/mricrogl/metadata.xml b/sci-visualization/mricrogl/metadata.xml index a70a4f691..62f47f127 100644 --- a/sci-visualization/mricrogl/metadata.xml +++ b/sci-visualization/mricrogl/metadata.xml @@ -1,4 +1,4 @@ -<?xml version="1.0" encoding="UTF-8"?> +<?xml version='1.0' encoding='UTF-8'?> <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <maintainer type="project"> diff --git a/sci-visualization/mricron/metadata.xml b/sci-visualization/mricron/metadata.xml index 3e689deb2..f2ec963bd 100644 --- a/sci-visualization/mricron/metadata.xml +++ b/sci-visualization/mricron/metadata.xml @@ -1,4 +1,4 @@ -<?xml version="1.0" encoding="UTF-8"?> +<?xml version='1.0' encoding='UTF-8'?> <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <maintainer type="project"> diff --git a/sci-visualization/nodemon/metadata.xml b/sci-visualization/nodemon/metadata.xml index 6c2651609..46b38f8e9 100644 --- a/sci-visualization/nodemon/metadata.xml +++ b/sci-visualization/nodemon/metadata.xml @@ -1,4 +1,4 @@ -<?xml version="1.0" encoding="UTF-8"?> +<?xml version='1.0' encoding='UTF-8'?> <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <maintainer type="person"> @@ -18,6 +18,6 @@ systems. <flag name="pbs">Enable support for the Portable Batch System.</flag> </use> <upstream> - <remote-id type="sourceforge">nodemon</remote-id> + <remote-id type="sourceforge">downloads</remote-id> </upstream> </pkgmetadata> diff --git a/sci-visualization/surf-ice/metadata.xml b/sci-visualization/surf-ice/metadata.xml index 434c6e79a..c30540d2e 100644 --- a/sci-visualization/surf-ice/metadata.xml +++ b/sci-visualization/surf-ice/metadata.xml @@ -1,4 +1,4 @@ -<?xml version="1.0" encoding="UTF-8"?> +<?xml version='1.0' encoding='UTF-8'?> <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <maintainer type="project"> diff --git a/sci-visualization/yt/metadata.xml b/sci-visualization/yt/metadata.xml index bf8fc161b..8d0c498af 100644 --- a/sci-visualization/yt/metadata.xml +++ b/sci-visualization/yt/metadata.xml @@ -1,4 +1,4 @@ -<?xml version="1.0" encoding="UTF-8"?> +<?xml version='1.0' encoding='UTF-8'?> <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <maintainer type="person"> diff --git a/sys-cluster/htcondor/metadata.xml b/sys-cluster/htcondor/metadata.xml index fd01a5ef5..6b59f13ef 100644 --- a/sys-cluster/htcondor/metadata.xml +++ b/sys-cluster/htcondor/metadata.xml @@ -1,4 +1,4 @@ -<?xml version="1.0" encoding="UTF-8"?> +<?xml version='1.0' encoding='UTF-8'?> <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <maintainer type="person"> @@ -18,7 +18,7 @@ their progress, and ultimately informs the user upon completion. HTCondor also contains mechanisms to submit jobs to grid-sites and supports many different grid toolkits. -</longdescription> + </longdescription> <use> <flag name="boinc">Enable backfill with BOINC jobs when the cluster is not being used</flag> <flag name="cgroup">Use <pkg>dev-libs/libcgroup</pkg> for kernel control groups</flag> diff --git a/sys-cluster/modules/metadata.xml b/sys-cluster/modules/metadata.xml index 93949be3e..c3afebb3f 100644 --- a/sys-cluster/modules/metadata.xml +++ b/sys-cluster/modules/metadata.xml @@ -1,4 +1,4 @@ -<?xml version="1.0" encoding="UTF-8"?> +<?xml version='1.0' encoding='UTF-8'?> <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <maintainer type="person"> diff --git a/sys-cluster/pyslice/metadata.xml b/sys-cluster/pyslice/metadata.xml index 380503dc8..ac3fb7b1e 100644 --- a/sys-cluster/pyslice/metadata.xml +++ b/sys-cluster/pyslice/metadata.xml @@ -1,4 +1,4 @@ -<?xml version="1.0" encoding="UTF-8"?> +<?xml version='1.0' encoding='UTF-8'?> <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <maintainer type="project"> diff --git a/www-client/casperjs/metadata.xml b/www-client/casperjs/metadata.xml index 3a70916ad..0227d5b56 100644 --- a/www-client/casperjs/metadata.xml +++ b/www-client/casperjs/metadata.xml @@ -1,4 +1,4 @@ -<?xml version="1.0" encoding="UTF-8"?> +<?xml version='1.0' encoding='UTF-8'?> <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <maintainer type="project"> diff --git a/x11-misc/envytools/metadata.xml b/x11-misc/envytools/metadata.xml index 856791447..a0fe55dd7 100644 --- a/x11-misc/envytools/metadata.xml +++ b/x11-misc/envytools/metadata.xml @@ -1,4 +1,4 @@ -<?xml version="1.0" encoding="UTF-8"?> +<?xml version='1.0' encoding='UTF-8'?> <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <maintainer type="person"> |