diff options
| -rw-r--r-- | sci-biology/phrap/ChangeLog | 12 | ||||
| -rw-r--r-- | sci-biology/phrap/Manifest | 4 | ||||
| -rw-r--r-- | sci-biology/phrap/metadata.xml | 5 | ||||
| -rw-r--r-- | sci-biology/phrap/phrap-0.990329.ebuild | 38 | ||||
| -rw-r--r-- | sci-biology/repeatmasker/Manifest | 2 |
5 files changed, 2 insertions, 59 deletions
diff --git a/sci-biology/phrap/ChangeLog b/sci-biology/phrap/ChangeLog deleted file mode 100644 index ad24df867..000000000 --- a/sci-biology/phrap/ChangeLog +++ /dev/null @@ -1,12 +0,0 @@ -# ChangeLog for sci-biology/phrap -# Copyright 1999-2007 Gentoo Foundation; Distributed under the GPL v2 -# $Header: $ - - 27 Apr 2007; Andrey Kislyuk <weaver@horizon.ath.cx> - +phrap-0.990329.ebuild: - Mass import from sunrise - - 20 Apr 2007; Andrey Kislyuk <weaver@horizon.ath.cx> +phrap-0.990329.ebuild, - +metadata.xml: - new package (bug 114094) - diff --git a/sci-biology/phrap/Manifest b/sci-biology/phrap/Manifest deleted file mode 100644 index d88dc575c..000000000 --- a/sci-biology/phrap/Manifest +++ /dev/null @@ -1,4 +0,0 @@ -DIST phrap-distrib.tar.Z 366163 RMD160 f6d15059903868b907df225b9022b47957f4004a SHA1 69d9343d1d3bc7edcab2ebca222370fc9db7b9f7 SHA256 e0be79818e3a8ca17391f42cc0ffbaf1a63299c8845a0b9ac3aaeb3cac641fcc -EBUILD phrap-0.990329.ebuild 864 RMD160 0da1a54046830d935a83a8cc264f9635e2c20574 SHA1 b2a8944e0c509089bdc4f02e5d9c942286a4b890 SHA256 f241e079fcefa686dc8dbb86a2c41e29eac5bbf52d7dc1a61d0acd4cef1ae39d -MISC ChangeLog 349 RMD160 df3f1863d3b262b9e132f56cca3ef29c32abec3a SHA1 fab185ba0db30f7e38348a51c320e18a07bfd3c5 SHA256 7f9bdafcf31c81b9645bbbe686713674401db183400afc50fe7645e362a0b0e6 -MISC metadata.xml 170 RMD160 645927a396fdc21cdeb089fe42c5397332420ea6 SHA1 ac7f48a14fec325926f9ce1be8fbf1f311b4f2e4 SHA256 d797a2ec6f9dc516c9f9c1a758ee87ad3e8c43101b5dc76c2f872d5bd4639b42 diff --git a/sci-biology/phrap/metadata.xml b/sci-biology/phrap/metadata.xml deleted file mode 100644 index 7e3286984..000000000 --- a/sci-biology/phrap/metadata.xml +++ /dev/null @@ -1,5 +0,0 @@ -<?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> -<pkgmetadata> -<herd>maintainer-wanted</herd> -</pkgmetadata> diff --git a/sci-biology/phrap/phrap-0.990329.ebuild b/sci-biology/phrap/phrap-0.990329.ebuild deleted file mode 100644 index eebf65a7b..000000000 --- a/sci-biology/phrap/phrap-0.990329.ebuild +++ /dev/null @@ -1,38 +0,0 @@ -# Copyright 1999-2008 Gentoo Foundation -# Distributed under the terms of the GNU General Public License v2 -# $Header: $ - -DESCRIPTION="Phrap, swat, cross_match: Shotgun assembly and alignment utilities" -HOMEPAGE="http://www.phrap.org/" -SRC_URI="phrap-distrib.tar.Z" - -LICENSE="phrap" -SLOT="0" -KEYWORDS="~x86" -IUSE="" - -DEPEND="" -RDEPEND="" - -S="${WORKDIR}" - -RESTRICT="fetch" - -pkg_nofetch() { - einfo "Please visit http://www.phrap.org/phredphrapconsed.html and obtain the file" - einfo '"distrib.tar.Z", then rename it to "phrap-distrib.tar.Z" and put it in' - einfo "${DISTDIR}" -} - -src_compile() { - sed -i 's/CFLAGS=/#CFLAGS=/' makefile - sed -i 's|#!/usr/local/bin/perl|#!/usr/bin/perl|' phrapview - emake || die "emake failed" -} - -src_install() { - dobin cluster cross_match loco phrap phrapview swat - for i in {general,phrap,swat}.doc ; do - newdoc ${i} ${i}.txt - done -} diff --git a/sci-biology/repeatmasker/Manifest b/sci-biology/repeatmasker/Manifest index 941fbe963..64bc62bbe 100644 --- a/sci-biology/repeatmasker/Manifest +++ b/sci-biology/repeatmasker/Manifest @@ -1,6 +1,8 @@ DIST RepeatMasker-open-3-1-7.tar.gz 8197799 RMD160 fda43f7e3ebe3dbf655b3071e93e6d47fdb8f1e3 SHA1 f36f09f2d4173437ac5eb090ea471b95fdfa832b SHA256 56c2866f7e489e5f606872ff97b509ae29e2b8816b8fd2ad0938edb7c6f788b8 DIST RepeatMasker-open-3-2-5.tar.gz 11119021 RMD160 e6fe732189d97dfefa49428b596e5a9b1a96b304 SHA1 b5b141643c5e0144f7945c31fb3a1be9b87e18af SHA256 ab64ba42cc5aca89ff7fbcaa6037a55f0a94ab543d62987f95738d469851b133 +DIST RepeatMasker-open-3-2-6.tar.gz 11119073 RMD160 8406137f548293f4fb56528a13b89e05625b00df SHA1 0555442365bfa15e41fed9b3196af0c31aad7918 SHA256 9f0d2d2abdbbaaa5abc63649fe3d24b18ab3cd7965514f4820816d74a484fb7b EBUILD repeatmasker-3.1.7.ebuild 1257 RMD160 dbc84c1ae3d41eaaf785199a665a12b0485053d4 SHA1 e3eb4f37c5683863702f11e18219e72fe3859bed SHA256 e8aca73edea668ad3a5f44ede1402fa65b6c1e5116572189c391a50850c6ae2c EBUILD repeatmasker-3.2.5.ebuild 1322 RMD160 bccc81304c95b4c1d1e93b41e57f87fa20232c85 SHA1 cf25db7bd29b692b0da1b9ac34177e1070ad0d65 SHA256 0a1e1606d2947e88bfaadd6629a1fec69fd5c77c230d12f4d19dea5c13e4db84 +EBUILD repeatmasker-3.2.6.ebuild 1322 RMD160 6e6ea46ff45053166bbd5dc1a7348bc7e7d0e73a SHA1 df90a334bfb54c7c8c75f8c338d712fb2daed7cd SHA256 a5947b20a40c8c72f51451c9af15fb0f04a1d569976e7bc8a4ad469910af24b6 MISC ChangeLog 450 RMD160 ffbe0da585531f3f4165c94c7ef09e16c7ee522c SHA1 3d40d70b12bdea3ef45c546eda146f7db3ffc547 SHA256 ddec35c446ddb71387535f684eb953af554319b9a62255686f21497289e2eb56 MISC metadata.xml 170 RMD160 645927a396fdc21cdeb089fe42c5397332420ea6 SHA1 ac7f48a14fec325926f9ce1be8fbf1f311b4f2e4 SHA256 d797a2ec6f9dc516c9f9c1a758ee87ad3e8c43101b5dc76c2f872d5bd4639b42 |