diff options
| -rw-r--r-- | dev-java/htsjdk/htsjdk-2.5.1.ebuild | 4 | ||||
| -rw-r--r-- | dev-java/htsjdk/htsjdk-9999.ebuild | 53 |
2 files changed, 55 insertions, 2 deletions
diff --git a/dev-java/htsjdk/htsjdk-2.5.1.ebuild b/dev-java/htsjdk/htsjdk-2.5.1.ebuild index 0f1e162dd..6ba163f80 100644 --- a/dev-java/htsjdk/htsjdk-2.5.1.ebuild +++ b/dev-java/htsjdk/htsjdk-2.5.1.ebuild @@ -1,4 +1,4 @@ -# Copyright 1999-2016 Gentoo Foundation +# Copyright 1999-2017 Gentoo Foundation # Distributed under the terms of the GNU General Public License v2 # $Id$ @@ -36,7 +36,7 @@ java_prepare(){ } src_compile(){ - # work around gradle writing $HOME/.gradle + # work around gradle writing $HOME/.gradle and $HOME/.git # https://github.com/samtools/htsjdk/issues/660#issuecomment-232155965 GRADLE_USER_HOME="${WORKDIR}" ./gradlew build || die } diff --git a/dev-java/htsjdk/htsjdk-9999.ebuild b/dev-java/htsjdk/htsjdk-9999.ebuild new file mode 100644 index 000000000..e9576743a --- /dev/null +++ b/dev-java/htsjdk/htsjdk-9999.ebuild @@ -0,0 +1,53 @@ +# Copyright 1999-2017 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Id$ + +EAPI="6" + +JAVA_PKG_IUSE="doc source" + +inherit git-r3 java-pkg-2 java-ant-2 + +DESCRIPTION="Java API for high-throughput sequencing data (HTS) formats." +HOMEPAGE="https://samtools.github.io/htsjdk/" +EGIT_REPO_URI="https://github.com/samtools/htsjdk.git" + +LICENSE="MIT" +SLOT="0" +IUSE="" +KEYWORDS="" # SANDBOX VIOLATION + +CDEPEND="dev-java/commons-jexl:2 + dev-java/commons-compress:0 + dev-java/commons-logging:0" + +DEPEND=">=virtual/jdk-1.8 + ${CDEPEND}" +RDEPEND=">=virtual/jre-1.8 + ${CDEPEND}" + +EANT_BUILD_TARGET="all" +EANT_NEEDS_TOOLS="true" +JAVA_ANT_REWRITE_CLASSPATH="true" +EANT_GENTOO_CLASSPATH="commons-jexl-2,commons-compress,commons-logging" + +java_prepare(){ + default +} + +src_compile(){ + # work around gradle writing $HOME/.gradle and $HOME/.git + # https://github.com/samtools/htsjdk/issues/660#issuecomment-232155965 + GRADLE_USER_HOME="${WORKDIR}" ./gradlew || die +} + +src_install() { + cd build/libs || die + + #for i in *-SNAPSHOT.jar; do + # java-pkg_newjar $i ${i/-[0-9]*.jar/.jar} + #done + java-pkg_newjar "${S}"/build/libs/*-SNAPSHOT.jar htsjdk.jar + use source && java-pkg_dosrc "${S}"/build/libs/*-sources.jar + use doc && java-pkg_dojavadoc "${S}"/build/libs/*-javadoc.jar +} |