diff options
91 files changed, 0 insertions, 1863 deletions
diff --git a/sci-chemistry/mgltools-autodocktools/Manifest b/sci-chemistry/mgltools-autodocktools/Manifest deleted file mode 100644 index 366b14ae4..000000000 --- a/sci-chemistry/mgltools-autodocktools/Manifest +++ /dev/null @@ -1 +0,0 @@ -DIST mgltools_source_1.5.6.tar.gz 40275811 BLAKE2B 98a2d71f33fc92233f1082637b54d63a180b6cf1fa8cc052cb497380ba1ea4c8bb1af023d492acfcbf11e23c33f4af7d297eada113838cb6f0133a55684546f3 SHA512 4ed956197f08b7c3779f0bb39393b40cdaff3461071b48815200c6ad0dce2de87375cda96fe20d3ace4ab81ba6b8cdb50b58d82f5e5b54fe2c7751201ff2f63e diff --git a/sci-chemistry/mgltools-autodocktools/metadata.xml b/sci-chemistry/mgltools-autodocktools/metadata.xml deleted file mode 100644 index da36ecbfc..000000000 --- a/sci-chemistry/mgltools-autodocktools/metadata.xml +++ /dev/null @@ -1,8 +0,0 @@ -<?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> -<pkgmetadata> - <maintainer type="project"> - <email>sci-chemistry@gentoo.org</email> - <name>Gentoo Chemistry Project</name> - </maintainer> -</pkgmetadata> diff --git a/sci-chemistry/mgltools-autodocktools/mgltools-autodocktools-1.5.6.ebuild b/sci-chemistry/mgltools-autodocktools/mgltools-autodocktools-1.5.6.ebuild deleted file mode 100644 index 7af92f5db..000000000 --- a/sci-chemistry/mgltools-autodocktools/mgltools-autodocktools-1.5.6.ebuild +++ /dev/null @@ -1,66 +0,0 @@ -# Copyright 1999-2015 Gentoo Foundation -# Distributed under the terms of the GNU General Public License v2 - -EAPI=5 - -PYTHON_COMPAT=( python2_7 ) -PYTHON_REQ_USE="tk" - -inherit distutils-r1 eutils - -MY_PN="AutoDockTools" -MY_P="${MY_PN}-${PV/_rc3/}" - -DESCRIPTION="MGLTools Plugin -- AutoDockTools" -HOMEPAGE="http://mgltools.scripps.edu" -SRC_URI="http://mgltools.scripps.edu/downloads/tars/releases/REL${PV}/mgltools_source_${PV}.tar.gz" - -LICENSE="MGLTOOLS MPL-1.1" -SLOT="0" -KEYWORDS="~amd64 ~x86" -IUSE="" - -RDEPEND=" - dev-python/zsi[${PYTHON_USEDEP}] - sci-chemistry/autodock - sci-chemistry/mgltools-dejavu[${PYTHON_USEDEP}] - sci-chemistry/mgltools-geomutils[${PYTHON_USEDEP}] - sci-chemistry/mgltools-mglutil[${PYTHON_USEDEP}] - sci-chemistry/mgltools-molkit[${PYTHON_USEDEP}] - sci-chemistry/mgltools-opengltk[${PYTHON_USEDEP}] - sci-chemistry/mgltools-pmv[${PYTHON_USEDEP}] - sci-chemistry/mgltools-pybabel[${PYTHON_USEDEP}] - sci-chemistry/mgltools-pyglf[${PYTHON_USEDEP}] - sci-chemistry/mgltools-support[${PYTHON_USEDEP}] - sci-chemistry/mgltools-viewer-framework[${PYTHON_USEDEP}] - dev-python/pillow[tk,${PYTHON_USEDEP}] -" -DEPEND="${RDEPEND} - dev-lang/swig" - -S="${WORKDIR}"/${MY_P} - -DOCS=( AutoDockTools/RELNOTES ) - -src_unpack() { - tar xzpf "${DISTDIR}"/${A} mgltools_source_${PV/_/}/MGLPACKS/${MY_P}.tar.gz || die - tar xzpf mgltools_source_${PV/_/}/MGLPACKS/${MY_P}.tar.gz || die -} - -python_prepare_all() { - ecvs_clean - find "${S}" -name LICENSE -type f -delete || die - - sed \ - -e 's:^.*CVS:#&1:g' \ - -e 's:^.*LICENSE:#&1:g' \ - -i "${S}"/MANIFEST.in || die - distutils-r1_python_prepare_all -} - -python_install_all() { - distutils-r1_python_install_all - - sed '1s:^.*$:#!/usr/bin/python:g' -i AutoDockTools/bin/runAdt || die - python_foreach_impl python_doscript AutoDockTools/bin/runAdt -} diff --git a/sci-chemistry/mgltools-bhtree/Manifest b/sci-chemistry/mgltools-bhtree/Manifest deleted file mode 100644 index 366b14ae4..000000000 --- a/sci-chemistry/mgltools-bhtree/Manifest +++ /dev/null @@ -1 +0,0 @@ -DIST mgltools_source_1.5.6.tar.gz 40275811 BLAKE2B 98a2d71f33fc92233f1082637b54d63a180b6cf1fa8cc052cb497380ba1ea4c8bb1af023d492acfcbf11e23c33f4af7d297eada113838cb6f0133a55684546f3 SHA512 4ed956197f08b7c3779f0bb39393b40cdaff3461071b48815200c6ad0dce2de87375cda96fe20d3ace4ab81ba6b8cdb50b58d82f5e5b54fe2c7751201ff2f63e diff --git a/sci-chemistry/mgltools-bhtree/metadata.xml b/sci-chemistry/mgltools-bhtree/metadata.xml deleted file mode 100644 index da36ecbfc..000000000 --- a/sci-chemistry/mgltools-bhtree/metadata.xml +++ /dev/null @@ -1,8 +0,0 @@ -<?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> -<pkgmetadata> - <maintainer type="project"> - <email>sci-chemistry@gentoo.org</email> - <name>Gentoo Chemistry Project</name> - </maintainer> -</pkgmetadata> diff --git a/sci-chemistry/mgltools-bhtree/mgltools-bhtree-1.5.6.ebuild b/sci-chemistry/mgltools-bhtree/mgltools-bhtree-1.5.6.ebuild deleted file mode 100644 index da8462b7d..000000000 --- a/sci-chemistry/mgltools-bhtree/mgltools-bhtree-1.5.6.ebuild +++ /dev/null @@ -1,43 +0,0 @@ -# Copyright 1999-2015 Gentoo Foundation -# Distributed under the terms of the GNU General Public License v2 - -EAPI=5 - -PYTHON_COMPAT=( python2_7 ) -PYTHON_REQ_USE="tk" - -inherit distutils-r1 eutils - -MY_PN="bhtree" -MY_P="${MY_PN}-${PV/_rc3/}" - -DESCRIPTION="MGLTools Plugin -- bhtree" -HOMEPAGE="http://mgltools.scripps.edu" -SRC_URI="http://mgltools.scripps.edu/downloads/tars/releases/REL${PV}/mgltools_source_${PV}.tar.gz" - -LICENSE="MGLTOOLS MPL-1.1" -SLOT="0" -KEYWORDS="~amd64 ~x86" -IUSE="" - -RDEPEND="dev-python/numpy[${PYTHON_USEDEP}]" -DEPEND="${RDEPEND} - dev-lang/swig" - -S="${WORKDIR}"/${MY_P} - -src_unpack() { - tar xzpf "${DISTDIR}"/${A} mgltools_source_${PV/_/}/MGLPACKS/${MY_P}.tar.gz || die - tar xzpf mgltools_source_${PV/_/}/MGLPACKS/${MY_P}.tar.gz || die -} - -python_prepare_all() { - ecvs_clean - find "${S}" -name LICENSE -type f -delete || die - - sed \ - -e 's:^.*CVS:#&1:g' \ - -e 's:^.*LICENSE:#&1:g' \ - -i "${S}"/MANIFEST.in || die - distutils-r1_python_prepare_all -} diff --git a/sci-chemistry/mgltools-cadd/Manifest b/sci-chemistry/mgltools-cadd/Manifest deleted file mode 100644 index 366b14ae4..000000000 --- a/sci-chemistry/mgltools-cadd/Manifest +++ /dev/null @@ -1 +0,0 @@ -DIST mgltools_source_1.5.6.tar.gz 40275811 BLAKE2B 98a2d71f33fc92233f1082637b54d63a180b6cf1fa8cc052cb497380ba1ea4c8bb1af023d492acfcbf11e23c33f4af7d297eada113838cb6f0133a55684546f3 SHA512 4ed956197f08b7c3779f0bb39393b40cdaff3461071b48815200c6ad0dce2de87375cda96fe20d3ace4ab81ba6b8cdb50b58d82f5e5b54fe2c7751201ff2f63e diff --git a/sci-chemistry/mgltools-cadd/metadata.xml b/sci-chemistry/mgltools-cadd/metadata.xml deleted file mode 100644 index da36ecbfc..000000000 --- a/sci-chemistry/mgltools-cadd/metadata.xml +++ /dev/null @@ -1,8 +0,0 @@ -<?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> -<pkgmetadata> - <maintainer type="project"> - <email>sci-chemistry@gentoo.org</email> - <name>Gentoo Chemistry Project</name> - </maintainer> -</pkgmetadata> diff --git a/sci-chemistry/mgltools-cadd/mgltools-cadd-1.5.6.ebuild b/sci-chemistry/mgltools-cadd/mgltools-cadd-1.5.6.ebuild deleted file mode 100644 index 3f6ccc4ec..000000000 --- a/sci-chemistry/mgltools-cadd/mgltools-cadd-1.5.6.ebuild +++ /dev/null @@ -1,42 +0,0 @@ -# Copyright 1999-2015 Gentoo Foundation -# Distributed under the terms of the GNU General Public License v2 - -EAPI=5 - -PYTHON_COMPAT=( python2_7 ) - -inherit distutils-r1 eutils - -MY_PN="CADD" -MY_P="${MY_PN}-${PV/_rc3/}" - -DESCRIPTION="MGLTools Plugin -- CADD" -HOMEPAGE="http://mgltools.scripps.edu" -SRC_URI="http://mgltools.scripps.edu/downloads/tars/releases/REL${PV}/mgltools_source_${PV}.tar.gz" - -LICENSE="MGLTOOLS MPL-1.1" -SLOT="0" -KEYWORDS="~amd64 ~x86" -IUSE="" - -RDEPEND="" -DEPEND="${RDEPEND} - dev-lang/swig" - -S="${WORKDIR}"/${MY_P} - -src_unpack() { - tar xzpf "${DISTDIR}"/${A} mgltools_source_${PV/_/}/MGLPACKS/${MY_P}.tar.gz || die - tar xzpf mgltools_source_${PV/_/}/MGLPACKS/${MY_P}.tar.gz || die -} - -python_prepare_all() { - ecvs_clean - find "${S}" -name LICENSE -type f -delete || die - - sed \ - -e 's:^.*CVS:#&1:g' \ - -e 's:^.*LICENSE:#&1:g' \ - -i "${S}"/MANIFEST.in || die - distutils-r1_python_prepare_all -} diff --git a/sci-chemistry/mgltools-cmolkit/Manifest b/sci-chemistry/mgltools-cmolkit/Manifest deleted file mode 100644 index 366b14ae4..000000000 --- a/sci-chemistry/mgltools-cmolkit/Manifest +++ /dev/null @@ -1 +0,0 @@ -DIST mgltools_source_1.5.6.tar.gz 40275811 BLAKE2B 98a2d71f33fc92233f1082637b54d63a180b6cf1fa8cc052cb497380ba1ea4c8bb1af023d492acfcbf11e23c33f4af7d297eada113838cb6f0133a55684546f3 SHA512 4ed956197f08b7c3779f0bb39393b40cdaff3461071b48815200c6ad0dce2de87375cda96fe20d3ace4ab81ba6b8cdb50b58d82f5e5b54fe2c7751201ff2f63e diff --git a/sci-chemistry/mgltools-cmolkit/metadata.xml b/sci-chemistry/mgltools-cmolkit/metadata.xml deleted file mode 100644 index da36ecbfc..000000000 --- a/sci-chemistry/mgltools-cmolkit/metadata.xml +++ /dev/null @@ -1,8 +0,0 @@ -<?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> -<pkgmetadata> - <maintainer type="project"> - <email>sci-chemistry@gentoo.org</email> - <name>Gentoo Chemistry Project</name> - </maintainer> -</pkgmetadata> diff --git a/sci-chemistry/mgltools-cmolkit/mgltools-cmolkit-1.5.6.ebuild b/sci-chemistry/mgltools-cmolkit/mgltools-cmolkit-1.5.6.ebuild deleted file mode 100644 index 0b1ee8975..000000000 --- a/sci-chemistry/mgltools-cmolkit/mgltools-cmolkit-1.5.6.ebuild +++ /dev/null @@ -1,42 +0,0 @@ -# Copyright 1999-2015 Gentoo Foundation -# Distributed under the terms of the GNU General Public License v2 - -EAPI=5 - -PYTHON_COMPAT=( python2_7 ) - -inherit distutils-r1 eutils - -MY_PN="cMolKit" -MY_P="${MY_PN}-${PV/_rc3/}" - -DESCRIPTION="MGLTools Plugin -- cMolKit" -HOMEPAGE="http://mgltools.scripps.edu" -SRC_URI="http://mgltools.scripps.edu/downloads/tars/releases/REL${PV}/mgltools_source_${PV}.tar.gz" - -LICENSE="MGLTOOLS MPL-1.1" -SLOT="0" -KEYWORDS="~amd64 ~x86" -IUSE="" - -RDEPEND="" -DEPEND="${RDEPEND} - dev-lang/swig" - -S="${WORKDIR}"/${MY_P} - -src_unpack() { - tar xzpf "${DISTDIR}"/${A} mgltools_source_${PV/_/}/MGLPACKS/${MY_P}.tar.gz || die - tar xzpf mgltools_source_${PV/_/}/MGLPACKS/${MY_P}.tar.gz || die -} - -python_prepare_all() { - ecvs_clean - find "${S}" -name LICENSE -type f -delete || die - - sed \ - -e 's:^.*CVS:#&1:g' \ - -e 's:^.*LICENSE:#&1:g' \ - -i "${S}"/MANIFEST.in || die - distutils-r1_python_prepare_all -} diff --git a/sci-chemistry/mgltools-dejavu/Manifest b/sci-chemistry/mgltools-dejavu/Manifest deleted file mode 100644 index 366b14ae4..000000000 --- a/sci-chemistry/mgltools-dejavu/Manifest +++ /dev/null @@ -1 +0,0 @@ -DIST mgltools_source_1.5.6.tar.gz 40275811 BLAKE2B 98a2d71f33fc92233f1082637b54d63a180b6cf1fa8cc052cb497380ba1ea4c8bb1af023d492acfcbf11e23c33f4af7d297eada113838cb6f0133a55684546f3 SHA512 4ed956197f08b7c3779f0bb39393b40cdaff3461071b48815200c6ad0dce2de87375cda96fe20d3ace4ab81ba6b8cdb50b58d82f5e5b54fe2c7751201ff2f63e diff --git a/sci-chemistry/mgltools-dejavu/files/mgltools-dejavu-1.5.6-pil.patch b/sci-chemistry/mgltools-dejavu/files/mgltools-dejavu-1.5.6-pil.patch deleted file mode 100644 index 0ac1abdea..000000000 --- a/sci-chemistry/mgltools-dejavu/files/mgltools-dejavu-1.5.6-pil.patch +++ /dev/null @@ -1,43 +0,0 @@ - DejaVu/Camera.py | 12 +++++++++--- - DejaVu/Texture.py | 5 ++++- - 2 files changed, 13 insertions(+), 4 deletions(-) - -diff --git a/DejaVu/Camera.py b/DejaVu/Camera.py -index 9ecc0eb..555666a 100644 ---- a/DejaVu/Camera.py -+++ b/DejaVu/Camera.py -@@ -38,9 +38,15 @@ This Module implements the Camera class and the Fog class. - - import os, sys, warnings - --import Image --import ImageFilter --import ImageChops -+try: -+ import Image -+ import ImageFilter -+ import ImageChops -+except ImportError: -+ from PIL import Image -+ from PIL import ImageFilter -+ from PIL import ImageChops -+ - - import tkMessageBox - -diff --git a/DejaVu/Texture.py b/DejaVu/Texture.py -index dccc280..bcf16be 100644 ---- a/DejaVu/Texture.py -+++ b/DejaVu/Texture.py -@@ -15,7 +15,10 @@ - # - - import sys, os --import Image -+try: -+ import Image -+except ImportError: -+ from PIL import Image - import numpy.oldnumeric as Numeric - import warnings - diff --git a/sci-chemistry/mgltools-dejavu/metadata.xml b/sci-chemistry/mgltools-dejavu/metadata.xml deleted file mode 100644 index da36ecbfc..000000000 --- a/sci-chemistry/mgltools-dejavu/metadata.xml +++ /dev/null @@ -1,8 +0,0 @@ -<?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> -<pkgmetadata> - <maintainer type="project"> - <email>sci-chemistry@gentoo.org</email> - <name>Gentoo Chemistry Project</name> - </maintainer> -</pkgmetadata> diff --git a/sci-chemistry/mgltools-dejavu/mgltools-dejavu-1.5.6-r1.ebuild b/sci-chemistry/mgltools-dejavu/mgltools-dejavu-1.5.6-r1.ebuild deleted file mode 100644 index 01029173c..000000000 --- a/sci-chemistry/mgltools-dejavu/mgltools-dejavu-1.5.6-r1.ebuild +++ /dev/null @@ -1,47 +0,0 @@ -# Copyright 1999-2015 Gentoo Foundation -# Distributed under the terms of the GNU General Public License v2 - -EAPI=5 - -PYTHON_COMPAT=( python2_7 ) -PYTHON_REQ_USE="tk" - -inherit distutils-r1 eutils - -MY_PN="DejaVu" -MY_P="${MY_PN}-${PV/_rc3/}" - -DESCRIPTION="MGLTools Plugin -- DejaVu" -HOMEPAGE="http://mgltools.scripps.edu" -SRC_URI="http://mgltools.scripps.edu/downloads/tars/releases/REL${PV}/mgltools_source_${PV}.tar.gz" - -LICENSE="MGLTOOLS MPL-1.1" -SLOT="0" -KEYWORDS="~amd64 ~x86" -IUSE="" - -RDEPEND="" -DEPEND="${RDEPEND} - dev-lang/swig" - -S="${WORKDIR}"/${MY_P} - -DOCS=( DejaVu/RELNOTES ) - -PATCHES=( "${FILESDIR}"/${P}-pil.patch ) - -src_unpack() { - tar xzpf "${DISTDIR}"/${A} mgltools_source_${PV/_/}/MGLPACKS/${MY_P}.tar.gz || die - tar xzpf mgltools_source_${PV/_/}/MGLPACKS/${MY_P}.tar.gz || die -} - -python_prepare_all() { - ecvs_clean - find "${S}" -name LICENSE -type f -delete || die - - sed \ - -e 's:^.*CVS:#&1:g' \ - -e 's:^.*LICENSE:#&1:g' \ - -i "${S}"/MANIFEST.in || die - distutils-r1_python_prepare_all -} diff --git a/sci-chemistry/mgltools-geomutils/Manifest b/sci-chemistry/mgltools-geomutils/Manifest deleted file mode 100644 index 366b14ae4..000000000 --- a/sci-chemistry/mgltools-geomutils/Manifest +++ /dev/null @@ -1 +0,0 @@ -DIST mgltools_source_1.5.6.tar.gz 40275811 BLAKE2B 98a2d71f33fc92233f1082637b54d63a180b6cf1fa8cc052cb497380ba1ea4c8bb1af023d492acfcbf11e23c33f4af7d297eada113838cb6f0133a55684546f3 SHA512 4ed956197f08b7c3779f0bb39393b40cdaff3461071b48815200c6ad0dce2de87375cda96fe20d3ace4ab81ba6b8cdb50b58d82f5e5b54fe2c7751201ff2f63e diff --git a/sci-chemistry/mgltools-geomutils/files/1.5.4-gcc4.3.patch b/sci-chemistry/mgltools-geomutils/files/1.5.4-gcc4.3.patch deleted file mode 100644 index ac7c2bdc0..000000000 --- a/sci-chemistry/mgltools-geomutils/files/1.5.4-gcc4.3.patch +++ /dev/null @@ -1,9 +0,0 @@ ---- geomutils-1.5.4/src/geomAlgorithms/objfile.cpp 2007-06-26 01:04:34.000000000 +0200 -+++ geomutils-1.5.4/src/geomAlgorithms/objfile.cpp.new 2009-05-17 20:30:43.597472969 +0200 -@@ -1,5 +1,6 @@ - #include <assert.h> - #include <fstream> -+#include <cstring> - - #include "objfile.h" - diff --git a/sci-chemistry/mgltools-geomutils/files/1.5.4-impl-dec.patch b/sci-chemistry/mgltools-geomutils/files/1.5.4-impl-dec.patch deleted file mode 100644 index 468d23544..000000000 --- a/sci-chemistry/mgltools-geomutils/files/1.5.4-impl-dec.patch +++ /dev/null @@ -1,12 +0,0 @@ -diff --git a/src/efit/efit.c b/src/efit/efit.c -index cfdf7b4..ef71e37 100644 ---- a/src/efit/efit.c -+++ b/src/efit/efit.c -@@ -6,6 +6,7 @@ - - #include <stdio.h> - #include <math.h> -+#include <string.h> - - #define EFIT_MAIN 1 - diff --git a/sci-chemistry/mgltools-geomutils/metadata.xml b/sci-chemistry/mgltools-geomutils/metadata.xml deleted file mode 100644 index da36ecbfc..000000000 --- a/sci-chemistry/mgltools-geomutils/metadata.xml +++ /dev/null @@ -1,8 +0,0 @@ -<?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> -<pkgmetadata> - <maintainer type="project"> - <email>sci-chemistry@gentoo.org</email> - <name>Gentoo Chemistry Project</name> - </maintainer> -</pkgmetadata> diff --git a/sci-chemistry/mgltools-geomutils/mgltools-geomutils-1.5.6.ebuild b/sci-chemistry/mgltools-geomutils/mgltools-geomutils-1.5.6.ebuild deleted file mode 100644 index 53c34289b..000000000 --- a/sci-chemistry/mgltools-geomutils/mgltools-geomutils-1.5.6.ebuild +++ /dev/null @@ -1,42 +0,0 @@ -# Copyright 1999-2015 Gentoo Foundation -# Distributed under the terms of the GNU General Public License v2 - -EAPI=5 - -PYTHON_COMPAT=( python2_7 ) - -inherit distutils-r1 eutils - -MY_PN="geomutils" -MY_P="${MY_PN}-${PV/_rc3/}" - -DESCRIPTION="MGLTools Plugin -- geomutils" -HOMEPAGE="http://mgltools.scripps.edu" -SRC_URI="http://mgltools.scripps.edu/downloads/tars/releases/REL${PV}/mgltools_source_${PV}.tar.gz" - -LICENSE="MGLTOOLS MPL-1.1" -SLOT="0" -KEYWORDS="~amd64 ~x86" -IUSE="" - -RDEPEND="dev-python/numpy[${PYTHON_USEDEP}]" -DEPEND="${RDEPEND} - dev-lang/swig" - -S="${WORKDIR}"/${MY_P} - -src_unpack() { - tar xzpf "${DISTDIR}"/${A} mgltools_source_${PV/_/}/MGLPACKS/${MY_P}.tar.gz || die - tar xzpf mgltools_source_${PV/_/}/MGLPACKS/${MY_P}.tar.gz || die -} - -python_prepare_all() { - ecvs_clean - find "${S}" -name LICENSE -type f -delete || die - - sed \ - -e 's:^.*CVS:#&1:g' \ - -e 's:^.*LICENSE:#&1:g' \ - -i "${S}"/MANIFEST.in || die - distutils-r1_python_prepare_all -} diff --git a/sci-chemistry/mgltools-gle/Manifest b/sci-chemistry/mgltools-gle/Manifest deleted file mode 100644 index 366b14ae4..000000000 --- a/sci-chemistry/mgltools-gle/Manifest +++ /dev/null @@ -1 +0,0 @@ -DIST mgltools_source_1.5.6.tar.gz 40275811 BLAKE2B 98a2d71f33fc92233f1082637b54d63a180b6cf1fa8cc052cb497380ba1ea4c8bb1af023d492acfcbf11e23c33f4af7d297eada113838cb6f0133a55684546f3 SHA512 4ed956197f08b7c3779f0bb39393b40cdaff3461071b48815200c6ad0dce2de87375cda96fe20d3ace4ab81ba6b8cdb50b58d82f5e5b54fe2c7751201ff2f63e diff --git a/sci-chemistry/mgltools-gle/files/mgltools-gle-1.5.6-swig.patch b/sci-chemistry/mgltools-gle/files/mgltools-gle-1.5.6-swig.patch deleted file mode 100644 index 4b632df88..000000000 --- a/sci-chemistry/mgltools-gle/files/mgltools-gle-1.5.6-swig.patch +++ /dev/null @@ -1,43 +0,0 @@ - gle-1.5.6/gle/gle.i | 8 ++++---- - 1 file changed, 4 insertions(+), 4 deletions(-) - -diff --git a/gle-1.5.6/gle/gle.i b/gle-1.5.6/gle/gle.i -index bc48694..76170f1 100644 ---- a/gle-1.5.6/gle/gle.i -+++ b/gle-1.5.6/gle/gle.i -@@ -149,7 +149,7 @@ glePolyCone_c4f (int npoints, /* numpoints in poly-line */ - gleColor4f color_array[1], /* colors at polyline verts */ - gleDouble radius_array[1]); /* cone radii at polyline verts */ - --#typemaps for Numeric arrays -+/* typemaps for Numeric arrays */ - DOUBLE_ARRAY2D( contour, [1][2], ncp ) - %apply double ARRAY2D[ANY][ANY] { double cont_normal[1][2] }; - %apply double VECTOR_NULL[ANY] { double up[3] }; -@@ -172,7 +172,7 @@ gleExtrusion_c4f (int ncp, /* number of contour points */ - gleDouble point_array[1][3], /* polyline vertices */ - gleColor4f color_array[1]); /* colors at polyline verts */ - --#typemaps for Numeric arrays -+/* typemaps for Numeric arrays */ - %apply double VECTOR[ANY] { double twist_array[1] }; - - /* extrude 2D contour, specifying local rotations (twists) */ -@@ -195,7 +195,7 @@ gleTwistExtrusion_c4f (int ncp, /* number of contour points */ - gleDouble twist_array[1]); /* countour twists (in degrees) */ - - --#typemaps for Numeric arrays -+/* typemaps for Numeric arrays */ - %apply double ARRAY3D_NULL[ANY][ANY][ANY] { double xform_array[1][2][3] }; - - /* extrude 2D contour, specifying local affine tranformations */ -@@ -218,7 +218,7 @@ gleSuperExtrusion_c4f (int ncp, /* number of contour points */ - gleColor4f color_array[1], /* color at polyline verts */ - gleDouble xform_array[1][2][3]); /* 2D contour xforms */ - --#typemaps for Numeric arrays -+/* typemaps for Numeric arrays */ - %apply double ARRAY2D_NULL[ANY][ANY] { double startXform[2][3] }; - %apply double ARRAY2D_NULL[ANY][ANY] { double dXformdTheta[2][3] }; - diff --git a/sci-chemistry/mgltools-gle/metadata.xml b/sci-chemistry/mgltools-gle/metadata.xml deleted file mode 100644 index da36ecbfc..000000000 --- a/sci-chemistry/mgltools-gle/metadata.xml +++ /dev/null @@ -1,8 +0,0 @@ -<?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> -<pkgmetadata> - <maintainer type="project"> - <email>sci-chemistry@gentoo.org</email> - <name>Gentoo Chemistry Project</name> - </maintainer> -</pkgmetadata> diff --git a/sci-chemistry/mgltools-gle/mgltools-gle-1.5.6.ebuild b/sci-chemistry/mgltools-gle/mgltools-gle-1.5.6.ebuild deleted file mode 100644 index b4a972135..000000000 --- a/sci-chemistry/mgltools-gle/mgltools-gle-1.5.6.ebuild +++ /dev/null @@ -1,44 +0,0 @@ -# Copyright 1999-2015 Gentoo Foundation -# Distributed under the terms of the GNU General Public License v2 - -EAPI=5 - -PYTHON_COMPAT=( python2_7 ) -PYTHON_REQ_USE="tk" - -inherit distutils-r1 eutils - -MY_PN="gle" -MY_P="${MY_PN}-${PV/_rc3/}" - -DESCRIPTION="MGLTools Plugin -- gle" -HOMEPAGE="http://mgltools.scripps.edu" -SRC_URI="http://mgltools.scripps.edu/downloads/tars/releases/REL${PV}/mgltools_source_${PV}.tar.gz" - -LICENSE="MGLTOOLS MPL-1.1" -SLOT="0" -KEYWORDS="~amd64 ~x86" -IUSE="" - -RDEPEND="virtual/opengl" -DEPEND="${RDEPEND} - dev-lang/swig" - -S="${WORKDIR}"/${MY_P} - -src_unpack() { - tar xzpf "${DISTDIR}"/${A} mgltools_source_${PV/_/}/MGLPACKS/${MY_P}.tar.gz || die - tar xzpf mgltools_source_${PV/_/}/MGLPACKS/${MY_P}.tar.gz || die -} - -python_prepare_all() { - local PATCHES=( "${FILESDIR}"/${P}-swig.patch ) - ecvs_clean - find "${S}" -name LICENSE -type f -delete || die - - sed \ - -e 's:^.*CVS:#&1:g' \ - -e 's:^.*LICENSE:#&1:g' \ - -i "${S}"/MANIFEST.in || die - distutils-r1_python_prepare_all -} diff --git a/sci-chemistry/mgltools-mglutil/Manifest b/sci-chemistry/mgltools-mglutil/Manifest deleted file mode 100644 index 366b14ae4..000000000 --- a/sci-chemistry/mgltools-mglutil/Manifest +++ /dev/null @@ -1 +0,0 @@ -DIST mgltools_source_1.5.6.tar.gz 40275811 BLAKE2B 98a2d71f33fc92233f1082637b54d63a180b6cf1fa8cc052cb497380ba1ea4c8bb1af023d492acfcbf11e23c33f4af7d297eada113838cb6f0133a55684546f3 SHA512 4ed956197f08b7c3779f0bb39393b40cdaff3461071b48815200c6ad0dce2de87375cda96fe20d3ace4ab81ba6b8cdb50b58d82f5e5b54fe2c7751201ff2f63e diff --git a/sci-chemistry/mgltools-mglutil/files/1.5.4-python.patch b/sci-chemistry/mgltools-mglutil/files/1.5.4-python.patch deleted file mode 100644 index c2fecf8f5..000000000 --- a/sci-chemistry/mgltools-mglutil/files/1.5.4-python.patch +++ /dev/null @@ -1,13 +0,0 @@ -diff --git a/mglutil/math/Tests/test_matToAxis.py b/mglutil/math/Tests/test_matToAxis.py -index 25befa4..acf75f3 100644 ---- a/mglutil/math/Tests/test_matToAxis.py -+++ b/mglutil/math/Tests/test_matToAxis.py -@@ -33,7 +33,7 @@ def rotateObject(): - for i in range(len(m1)): - if fabs(m1[i]-m2[i]) > 1e-4: - bSame = False -- assert (bSame, True) -+ assert bSame, True - - - def test_rotateObject(): diff --git a/sci-chemistry/mgltools-mglutil/files/mgltools-mglutil-1.5.6-tcltk86.patch b/sci-chemistry/mgltools-mglutil/files/mgltools-mglutil-1.5.6-tcltk86.patch deleted file mode 100644 index dc926cf83..000000000 --- a/sci-chemistry/mgltools-mglutil/files/mgltools-mglutil-1.5.6-tcltk86.patch +++ /dev/null @@ -1,104 +0,0 @@ -Index: mglutil-1.5.7~rc1+cvs.20150324/mglutil/gui/BasicWidgets/Tk/thumbwheel.py -=================================================================== ---- mglutil-1.5.7~rc1+cvs.20150324.orig/mglutil/gui/BasicWidgets/Tk/thumbwheel.py -+++ mglutil-1.5.7~rc1+cvs.20150324/mglutil/gui/BasicWidgets/Tk/thumbwheel.py -@@ -88,7 +88,8 @@ - # checkkeywords(kw) - - Tkinter.Frame.__init__(self, master) -- Tkinter.Pack.config(self, side='left', anchor='w') -+ #Tkinter.Pack.config(self, side='left', anchor='w') -+ Tkinter.Pack.config(master, side='left', anchor='w') - - #FIXME: nblines are not dynamically computed - self.nblines = 30 -Index: mglutil-1.5.7~rc1+cvs.20150324/mglutil/gui/BasicWidgets/Tk/vector3DGUI.py -=================================================================== ---- mglutil-1.5.7~rc1+cvs.20150324.orig/mglutil/gui/BasicWidgets/Tk/vector3DGUI.py -+++ mglutil-1.5.7~rc1+cvs.20150324/mglutil/gui/BasicWidgets/Tk/vector3DGUI.py -@@ -86,7 +86,7 @@ - [ 0.25 , 0.25 , 0.93541437, 0. ], - [ 0. , 0. , 0. , 1. ]],'f') - self.viewingMat = Numeric.transpose(self.viewingMatInv) -- self.createCanvas(master, size) -+ self.createCanvas(self, size) - self.createEntries(self.frame) - Tkinter.Widget.bind(self.canvas, "<ButtonPress-1>", self.mouseDown) - Tkinter.Widget.bind(self.canvas, "<ButtonRelease-1>", self.mouseUp) -@@ -357,19 +357,22 @@ - - def createEntries(self, master): - self.f = Tkinter.Frame(master) -- self.f.grid(column=3, rowspan=3) -+ self.f.pack(side='top', expand=1) -+ self.f.grid = Tkinter.Frame(self.f) -+ self.f.grid.pack(side='top', expand=1) -+ self.f.grid.grid(column=3, rowspan=3) - - def fX(): self.vector = [1.,0.,0.]; self.setEntries(); self.callbacks.CallCallbacks(self.vector) - def fY(): self.vector = [0.,1.,0.]; self.setEntries(); self.callbacks.CallCallbacks(self.vector) - def fZ(): self.vector = [0.,0.,1.]; self.setEntries(); self.callbacks.CallCallbacks(self.vector) -- lX = Tkinter.Button(master=self.f, text='x', command=fX) -- lY = Tkinter.Button(master=self.f, text='y', command=fY) -- lZ = Tkinter.Button(master=self.f, text='z', command=fZ) -+ lX = Tkinter.Button(master=self.f.grid, text='x', command=fX) -+ lY = Tkinter.Button(master=self.f.grid, text='y', command=fY) -+ lZ = Tkinter.Button(master=self.f.grid, text='z', command=fZ) - lX.grid(row=0, column=0) - lY.grid(row=1, column=0) - lZ.grid(row=2, column=0) - -- self.thumbx = ThumbWheel(master=self.f, width=50, -+ self.thumbx = ThumbWheel(master=self.f.grid, width=50, - height=20, labcfg={'text':'X:','side':'left'}, - wheelPad=2, oneTurn=.1, min=-1, max=1, - showLabel=0, precision=5, type=float) -@@ -378,7 +381,7 @@ - self.thumbx.canvas.unbind("<Button-3>") - self.thumbx.grid(row=0, column=1) - -- self.thumby = ThumbWheel(master=self.f, width=50, -+ self.thumby = ThumbWheel(master=self.f.grid, width=50, - height=20, labcfg={'text':'Y:','side':'left'}, - wheelPad=2, oneTurn=.1, min=-1, max=1, - showLabel=0, precision=5, type=float) -@@ -387,7 +390,7 @@ - self.thumby.canvas.unbind("<Button-3>") - self.thumby.grid(row=1, column=1) - -- self.thumbz = ThumbWheel(master=self.f, width=50, -+ self.thumbz = ThumbWheel(master=self.f.grid, width=50, - height=20, labcfg={'text':'Z:','side':'left'}, - wheelPad=2, oneTurn=.1, min=-1, max=1, - showLabel=0, precision=5, type=float) -@@ -397,19 +400,19 @@ - self.thumbz.grid(row=2, column=1) - - self.entryXTk = Tkinter.StringVar() -- self.entryX = Tkinter.Entry(master=self.f, textvariable=self.entryXTk, -+ self.entryX = Tkinter.Entry(master=self.f.grid, textvariable=self.entryXTk, - width=8) - self.entryX.bind('<Return>', self.entryX_cb) - self.entryX.grid(row=0, column=2) - - self.entryYTk = Tkinter.StringVar() -- self.entryY = Tkinter.Entry(master=self.f, textvariable=self.entryYTk, -+ self.entryY = Tkinter.Entry(master=self.f.grid, textvariable=self.entryYTk, - width=8) - self.entryY.bind('<Return>', self.entryY_cb) - self.entryY.grid(row=1, column=2) - - self.entryZTk = Tkinter.StringVar() -- self.entryZ = Tkinter.Entry(master=self.f, textvariable=self.entryZTk, -+ self.entryZ = Tkinter.Entry(master=self.f.grid, textvariable=self.entryZTk, - width=8) - self.entryZ.bind('<Return>', self.entryZ_cb) - self.entryZ.grid(row=2, column=2) -@@ -420,7 +423,6 @@ - - self.entryV.bind('<Return>', self.entryV_cb) - -- self.f.pack(side='top', expand=1) - - self.entryV.pack() - diff --git a/sci-chemistry/mgltools-mglutil/metadata.xml b/sci-chemistry/mgltools-mglutil/metadata.xml deleted file mode 100644 index da36ecbfc..000000000 --- a/sci-chemistry/mgltools-mglutil/metadata.xml +++ /dev/null @@ -1,8 +0,0 @@ -<?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> -<pkgmetadata> - <maintainer type="project"> - <email>sci-chemistry@gentoo.org</email> - <name>Gentoo Chemistry Project</name> - </maintainer> -</pkgmetadata> diff --git a/sci-chemistry/mgltools-mglutil/mgltools-mglutil-1.5.6-r1.ebuild b/sci-chemistry/mgltools-mglutil/mgltools-mglutil-1.5.6-r1.ebuild deleted file mode 100644 index b15258435..000000000 --- a/sci-chemistry/mgltools-mglutil/mgltools-mglutil-1.5.6-r1.ebuild +++ /dev/null @@ -1,48 +0,0 @@ -# Copyright 1999-2015 Gentoo Foundation -# Distributed under the terms of the GNU General Public License v2 - -EAPI=5 - -PYTHON_COMPAT=( python2_7 ) - -inherit distutils-r1 eutils - -MY_PN="mglutil" -MY_P="${MY_PN}-${PV/_rc3/}" - -DESCRIPTION="MGLTools Plugin -- mglutil" -HOMEPAGE="http://mgltools.scripps.edu" -SRC_URI="http://mgltools.scripps.edu/downloads/tars/releases/REL${PV}/mgltools_source_${PV}.tar.gz" - -LICENSE="MGLTOOLS MPL-1.1" -SLOT="0" -KEYWORDS="~amd64 ~x86" -IUSE="" - -RDEPEND="" -DEPEND="${RDEPEND} - dev-lang/swig" - -S="${WORKDIR}"/${MY_P} - -DOCS=( mglutil/RELNOTES ) - -src_unpack() { - tar xzpf "${DISTDIR}"/${A} mgltools_source_${PV/_/}/MGLPACKS/${MY_P}.tar.gz || die - tar xzpf mgltools_source_${PV/_/}/MGLPACKS/${MY_P}.tar.gz || die -} - -python_prepare_all() { - local PATCHES=( - "${FILESDIR}"/1.5.4-python.patch - "${FILESDIR}"/${P}-tcltk86.patch - ) - ecvs_clean - find "${S}" -name LICENSE -type f -delete || die - - sed \ - -e 's:^.*CVS:#&1:g' \ - -e 's:^.*LICENSE:#&1:g' \ - -i "${S}"/MANIFEST.in || die - distutils-r1_python_prepare_all -} diff --git a/sci-chemistry/mgltools-molkit/Manifest b/sci-chemistry/mgltools-molkit/Manifest deleted file mode 100644 index 366b14ae4..000000000 --- a/sci-chemistry/mgltools-molkit/Manifest +++ /dev/null @@ -1 +0,0 @@ -DIST mgltools_source_1.5.6.tar.gz 40275811 BLAKE2B 98a2d71f33fc92233f1082637b54d63a180b6cf1fa8cc052cb497380ba1ea4c8bb1af023d492acfcbf11e23c33f4af7d297eada113838cb6f0133a55684546f3 SHA512 4ed956197f08b7c3779f0bb39393b40cdaff3461071b48815200c6ad0dce2de87375cda96fe20d3ace4ab81ba6b8cdb50b58d82f5e5b54fe2c7751201ff2f63e diff --git a/sci-chemistry/mgltools-molkit/metadata.xml b/sci-chemistry/mgltools-molkit/metadata.xml deleted file mode 100644 index da36ecbfc..000000000 --- a/sci-chemistry/mgltools-molkit/metadata.xml +++ /dev/null @@ -1,8 +0,0 @@ -<?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> -<pkgmetadata> - <maintainer type="project"> - <email>sci-chemistry@gentoo.org</email> - <name>Gentoo Chemistry Project</name> - </maintainer> -</pkgmetadata> diff --git a/sci-chemistry/mgltools-molkit/mgltools-molkit-1.5.6.ebuild b/sci-chemistry/mgltools-molkit/mgltools-molkit-1.5.6.ebuild deleted file mode 100644 index dd79cf6ef..000000000 --- a/sci-chemistry/mgltools-molkit/mgltools-molkit-1.5.6.ebuild +++ /dev/null @@ -1,44 +0,0 @@ -# Copyright 1999-2015 Gentoo Foundation -# Distributed under the terms of the GNU General Public License v2 - -EAPI=5 - -PYTHON_COMPAT=( python2_7 ) - -inherit distutils-r1 eutils - -MY_PN="MolKit" -MY_P="${MY_PN}-${PV/_rc3/}" - -DESCRIPTION="MGLTools Plugin -- MolKit" -HOMEPAGE="http://mgltools.scripps.edu" -SRC_URI="http://mgltools.scripps.edu/downloads/tars/releases/REL${PV}/mgltools_source_${PV}.tar.gz" - -LICENSE="MGLTOOLS MPL-1.1" -SLOT="0" -KEYWORDS="~amd64 ~x86" -IUSE="" - -RDEPEND="sci-chemistry/pdb2pqr" -DEPEND="${RDEPEND} - dev-lang/swig" - -S="${WORKDIR}"/${MY_P} - -DOCS=( MolKit/RELNOTES ) - -src_unpack() { - tar xzpf "${DISTDIR}"/${A} mgltools_source_${PV/_/}/MGLPACKS/${MY_P}.tar.gz || die - tar xzpf mgltools_source_${PV/_/}/MGLPACKS/${MY_P}.tar.gz || die -} - -python_prepare_all() { - ecvs_clean - find "${S}" -name LICENSE -type f -delete || die - - sed \ - -e 's:^.*CVS:#&1:g' \ - -e 's:^.*LICENSE:#&1:g' \ - -i "${S}"/MANIFEST.in || die - distutils-r1_python_prepare_all -} diff --git a/sci-chemistry/mgltools-networkeditor/Manifest b/sci-chemistry/mgltools-networkeditor/Manifest deleted file mode 100644 index 366b14ae4..000000000 --- a/sci-chemistry/mgltools-networkeditor/Manifest +++ /dev/null @@ -1 +0,0 @@ -DIST mgltools_source_1.5.6.tar.gz 40275811 BLAKE2B 98a2d71f33fc92233f1082637b54d63a180b6cf1fa8cc052cb497380ba1ea4c8bb1af023d492acfcbf11e23c33f4af7d297eada113838cb6f0133a55684546f3 SHA512 4ed956197f08b7c3779f0bb39393b40cdaff3461071b48815200c6ad0dce2de87375cda96fe20d3ace4ab81ba6b8cdb50b58d82f5e5b54fe2c7751201ff2f63e diff --git a/sci-chemistry/mgltools-networkeditor/metadata.xml b/sci-chemistry/mgltools-networkeditor/metadata.xml deleted file mode 100644 index da36ecbfc..000000000 --- a/sci-chemistry/mgltools-networkeditor/metadata.xml +++ /dev/null @@ -1,8 +0,0 @@ -<?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> -<pkgmetadata> - <maintainer type="project"> - <email>sci-chemistry@gentoo.org</email> - <name>Gentoo Chemistry Project</name> - </maintainer> -</pkgmetadata> diff --git a/sci-chemistry/mgltools-networkeditor/mgltools-networkeditor-1.5.6.ebuild b/sci-chemistry/mgltools-networkeditor/mgltools-networkeditor-1.5.6.ebuild deleted file mode 100644 index 8b2630d7a..000000000 --- a/sci-chemistry/mgltools-networkeditor/mgltools-networkeditor-1.5.6.ebuild +++ /dev/null @@ -1,44 +0,0 @@ -# Copyright 1999-2015 Gentoo Foundation -# Distributed under the terms of the GNU General Public License v2 - -EAPI=5 - -PYTHON_COMPAT=( python2_7 ) - -inherit distutils-r1 eutils - -MY_PN="NetworkEditor" -MY_P="${MY_PN}-${PV/_rc3/}" - -DESCRIPTION="MGLTools Plugin -- NetworkEditor" -HOMEPAGE="http://mgltools.scripps.edu" -SRC_URI="http://mgltools.scripps.edu/downloads/tars/releases/REL${PV}/mgltools_source_${PV}.tar.gz" - -LICENSE="MGLTOOLS MPL-1.1" -SLOT="0" -KEYWORDS="~amd64 ~x86" -IUSE="" - -RDEPEND="" -DEPEND="${RDEPEND} - dev-lang/swig" - -S="${WORKDIR}"/${MY_P} - -DOCS=( NetworkEditor/RELNOTES ) - -src_unpack() { - tar xzpf "${DISTDIR}"/${A} mgltools_source_${PV/_/}/MGLPACKS/${MY_P}.tar.gz || die - tar xzpf mgltools_source_${PV/_/}/MGLPACKS/${MY_P}.tar.gz || die -} - -python_prepare_all() { - ecvs_clean - find "${S}" -name LICENSE -type f -delete || die - - sed \ - -e 's:^.*CVS:#&1:g' \ - -e 's:^.*LICENSE:#&1:g' \ - -i "${S}"/MANIFEST.in || die - distutils-r1_python_prepare_all -} diff --git a/sci-chemistry/mgltools-opengltk/Manifest b/sci-chemistry/mgltools-opengltk/Manifest deleted file mode 100644 index 366b14ae4..000000000 --- a/sci-chemistry/mgltools-opengltk/Manifest +++ /dev/null @@ -1 +0,0 @@ -DIST mgltools_source_1.5.6.tar.gz 40275811 BLAKE2B 98a2d71f33fc92233f1082637b54d63a180b6cf1fa8cc052cb497380ba1ea4c8bb1af023d492acfcbf11e23c33f4af7d297eada113838cb6f0133a55684546f3 SHA512 4ed956197f08b7c3779f0bb39393b40cdaff3461071b48815200c6ad0dce2de87375cda96fe20d3ace4ab81ba6b8cdb50b58d82f5e5b54fe2c7751201ff2f63e diff --git a/sci-chemistry/mgltools-opengltk/files/mgltools-opengltk-1.5.6_rc2-glew.patch b/sci-chemistry/mgltools-opengltk/files/mgltools-opengltk-1.5.6_rc2-glew.patch deleted file mode 100644 index 8e62dbb1a..000000000 --- a/sci-chemistry/mgltools-opengltk/files/mgltools-opengltk-1.5.6_rc2-glew.patch +++ /dev/null @@ -1,16 +0,0 @@ - setup.py | 2 +- - 1 files changed, 1 insertions(+), 1 deletions(-) - -diff --git a/setup.py b/setup.py -index 21f893f..ca5ec85 100644 ---- a/setup.py -+++ b/setup.py -@@ -615,7 +615,7 @@ elif platform == 'win32': - macros = [('WIN32', None)] - else: - extra_link_args = '' -- libraries = '' -+ libraries = gl_libs - macros = [] - - glextlib_ext = MyExtension("extent._glextlib", diff --git a/sci-chemistry/mgltools-opengltk/files/mgltools-opengltk-1.5.6_rc2-unbundle.patch b/sci-chemistry/mgltools-opengltk/files/mgltools-opengltk-1.5.6_rc2-unbundle.patch deleted file mode 100644 index 3b03fc0c5..000000000 --- a/sci-chemistry/mgltools-opengltk/files/mgltools-opengltk-1.5.6_rc2-unbundle.patch +++ /dev/null @@ -1,28 +0,0 @@ - setup.py | 7 ++----- - 1 files changed, 2 insertions(+), 5 deletions(-) - -diff --git a/setup.py b/setup.py -index 0191ba2..bda3e41 100644 ---- a/setup.py -+++ b/setup.py -@@ -268,9 +268,6 @@ class build_EXT(build_ext): - if path.isfile(statlib1) and path.isfile(statlib2): - self.spawn(["ranlib", "-s", statlib1]) - self.spawn(["ranlib", "-s", statlib2]) -- togl_build(self,self.include_dirs, -- self.library_dirs, -- togl_libs) - #if platform in ["linux2", "win32"]: - if os.name in ['nt']: - tkdnd_build(self) -@@ -716,8 +713,8 @@ glxlib_ext = MyExtension("extent._glxlib", - ], #sources - define_macros = macros, - include_dirs = glx_incldirs, -- library_dirs = glx_libdirs, -- libraries = ['X11'] + gl_libs, -+ library_dirs = glx_libdirs + ['@GENTOO_PORTAGE_EPREFIX@/usr/lib64/Togl2.0/'], -+ libraries = ['X11', 'GLEW', 'GLEWmx'] + gl_libs, - headers = { - 'name': path.join("GL","glx.h"), - 'dir': h_dir, diff --git a/sci-chemistry/mgltools-opengltk/metadata.xml b/sci-chemistry/mgltools-opengltk/metadata.xml deleted file mode 100644 index da36ecbfc..000000000 --- a/sci-chemistry/mgltools-opengltk/metadata.xml +++ /dev/null @@ -1,8 +0,0 @@ -<?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> -<pkgmetadata> - <maintainer type="project"> - <email>sci-chemistry@gentoo.org</email> - <name>Gentoo Chemistry Project</name> - </maintainer> -</pkgmetadata> diff --git a/sci-chemistry/mgltools-opengltk/mgltools-opengltk-1.5.6.ebuild b/sci-chemistry/mgltools-opengltk/mgltools-opengltk-1.5.6.ebuild deleted file mode 100644 index 598039d5a..000000000 --- a/sci-chemistry/mgltools-opengltk/mgltools-opengltk-1.5.6.ebuild +++ /dev/null @@ -1,60 +0,0 @@ -# Copyright 1999-2017 Gentoo Foundation -# Distributed under the terms of the GNU General Public License v2 - -EAPI=6 - -PYTHON_COMPAT=( python2_7 ) - -inherit distutils-r1 eutils prefix - -MY_PN="opengltk" -MY_P="${MY_PN}-${PV/_rc3/}" - -DESCRIPTION="MGLTools Plugin -- opengltk" -HOMEPAGE="http://mgltools.scripps.edu" -SRC_URI="http://mgltools.scripps.edu/downloads/tars/releases/REL${PV}/mgltools_source_${PV}.tar.gz" - -LICENSE="MGLTOOLS MPL-1.1" -SLOT="0" -KEYWORDS="~amd64 ~x86" -IUSE="" - -RDEPEND=" - dev-lang/tk:0 - dev-python/numpy[${PYTHON_USEDEP}] - dev-tcltk/tkdnd - dev-tcltk/togl:0 - media-libs/glew:0= - virtual/opengl" -DEPEND="${RDEPEND} - dev-lang/swig" - -S="${WORKDIR}"/${MY_P} - -src_unpack() { - tar xzpf "${DISTDIR}"/${A} mgltools_source_${PV/_/}/MGLPACKS/${MY_P}.tar.gz || die - tar xzpf mgltools_source_${PV/_/}/MGLPACKS/${MY_P}.tar.gz || die -} - -python_prepare_all() { - local tcl_ver="$(best_version dev-lang/tcl | cut -d- -f3 | cut -d. -f1,2)" - - local PATCHES=( "${FILESDIR}"/${PN}-1.5.6_rc2-unbundle.patch ) - - eprefixify setup.py - - ecvs_clean - find "${S}" -name LICENSE -type f -delete || die - find Togl2.0 tkdnd2.0 include/tcltk84 -delete || die - - sed \ - -e 's:^.*CVS:#&1:g' \ - -e 's:^.*LICENSE:#&1:g' \ - -i "${S}"/MANIFEST.in || die - - sed \ - -e "s:8.4:${tcl_ver}:g" \ - -e "s:8.5:${tcl_ver}:g" \ - -i setup.py || die - distutils-r1_python_prepare_all -} diff --git a/sci-chemistry/mgltools-pmv/Manifest b/sci-chemistry/mgltools-pmv/Manifest deleted file mode 100644 index 366b14ae4..000000000 --- a/sci-chemistry/mgltools-pmv/Manifest +++ /dev/null @@ -1 +0,0 @@ -DIST mgltools_source_1.5.6.tar.gz 40275811 BLAKE2B 98a2d71f33fc92233f1082637b54d63a180b6cf1fa8cc052cb497380ba1ea4c8bb1af023d492acfcbf11e23c33f4af7d297eada113838cb6f0133a55684546f3 SHA512 4ed956197f08b7c3779f0bb39393b40cdaff3461071b48815200c6ad0dce2de87375cda96fe20d3ace4ab81ba6b8cdb50b58d82f5e5b54fe2c7751201ff2f63e diff --git a/sci-chemistry/mgltools-pmv/files/mgltools-pmv-1.5.6_rc2-code-fix.patch b/sci-chemistry/mgltools-pmv/files/mgltools-pmv-1.5.6_rc2-code-fix.patch deleted file mode 100644 index 10e2d3b96..000000000 --- a/sci-chemistry/mgltools-pmv/files/mgltools-pmv-1.5.6_rc2-code-fix.patch +++ /dev/null @@ -1,66 +0,0 @@ - .../blender/plugin/blenderPmvClientGUI.py | 2 +- - .../cinema4d/plugin/epmv_c4d_plugin.py | 2 +- - Pmv/hostappInterface/cinema4d/test/energy_test.py | 4 ++-- - Pmv/styles/sessionToStyle.py | 3 +-- - 4 files changed, 5 insertions(+), 6 deletions(-) - -diff --git a/Pmv/hostappInterface/blender/plugin/blenderPmvClientGUI.py b/Pmv/hostappInterface/blender/plugin/blenderPmvClientGUI.py -index 68e09c0..d52b17d 100644 ---- a/Pmv/hostappInterface/blender/plugin/blenderPmvClientGUI.py -+++ b/Pmv/hostappInterface/blender/plugin/blenderPmvClientGUI.py -@@ -46,7 +46,7 @@ interface... - import math - import sys - --MGL_ROOT= #'/Library/MGLTools/1.5.6.csv' -+MGL_ROOT= "" #'/Library/MGLTools/1.5.6.csv' - sys.path[0]=(MGL_ROOT+'/lib/python2.5/site-packages') - sys.path.append(MGL_ROOT+'/lib/python2.5/site-packages/PIL') - sys.path.append(MGL_ROOT+'/MGLToolsPckgs') -diff --git a/Pmv/hostappInterface/cinema4d/plugin/epmv_c4d_plugin.py b/Pmv/hostappInterface/cinema4d/plugin/epmv_c4d_plugin.py -index 42617e3..6087cd0 100644 ---- a/Pmv/hostappInterface/cinema4d/plugin/epmv_c4d_plugin.py -+++ b/Pmv/hostappInterface/cinema4d/plugin/epmv_c4d_plugin.py -@@ -38,7 +38,7 @@ __version__="v0.1.1a" - # ***** END GPL LICENCE BLOCK ***** - # -------------------------------------------------------------------------- - --MGL_ROOT= -+MGL_ROOT= "" - - #TODO: - #make the pyrosetta extension -diff --git a/Pmv/hostappInterface/cinema4d/test/energy_test.py b/Pmv/hostappInterface/cinema4d/test/energy_test.py -index 9393e25..c5f83c9 100644 ---- a/Pmv/hostappInterface/cinema4d/test/energy_test.py -+++ b/Pmv/hostappInterface/cinema4d/test/energy_test.py -@@ -56,7 +56,7 @@ c = self.md_Amber94 - #call md_Amber94 command - #c('mdtest5', 349, callback=1, filename='0', log=0, callback_freq=10) - import thread --thread.start_new(c,('mdtest5', 349, callback=1, filename='0', log=0, callback_freq=10)) -+thread.start_new_thread(c,'mdtest5', 349, callback=1, filename='0', log=0, callback_freq=10) - thr = MyThread()#c,'mdtest5', 349, callback=1, filename='0', log=0, callback_freq=10) - thr.start(back=True) - #do some other operations here -@@ -101,4 +101,4 @@ for mode in modes: - - - # Show animation of the first non-trivial mode --view(modes[6]) -\ No newline at end of file -+view(modes[6]) -diff --git a/Pmv/styles/sessionToStyle.py b/Pmv/styles/sessionToStyle.py -index 013bae1..4b0db48 100644 ---- a/Pmv/styles/sessionToStyle.py -+++ b/Pmv/styles/sessionToStyle.py -@@ -14,8 +14,7 @@ name, ext = os.path.splitext(filename) - f = open(name+'_style.py', 'w') - f.write("numberOfMolecules = 1\n\n") - --f.write("__doc__ = """Style_01: Applies to X molecules. It displays .. --"""\n") -+f.write('__doc__ = """Style_01: Applies to X molecules. It displays .."""\n') - - f.write("def applyStyle(mv, molName):\n") - f.write(" mode='both'\n") diff --git a/sci-chemistry/mgltools-pmv/metadata.xml b/sci-chemistry/mgltools-pmv/metadata.xml deleted file mode 100644 index da36ecbfc..000000000 --- a/sci-chemistry/mgltools-pmv/metadata.xml +++ /dev/null @@ -1,8 +0,0 @@ -<?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> -<pkgmetadata> - <maintainer type="project"> - <email>sci-chemistry@gentoo.org</email> - <name>Gentoo Chemistry Project</name> - </maintainer> -</pkgmetadata> diff --git a/sci-chemistry/mgltools-pmv/mgltools-pmv-1.5.6.ebuild b/sci-chemistry/mgltools-pmv/mgltools-pmv-1.5.6.ebuild deleted file mode 100644 index 405ab74be..000000000 --- a/sci-chemistry/mgltools-pmv/mgltools-pmv-1.5.6.ebuild +++ /dev/null @@ -1,52 +0,0 @@ -# Copyright 1999-2015 Gentoo Foundation -# Distributed under the terms of the GNU General Public License v2 - -EAPI=5 - -PYTHON_COMPAT=( python2_7 ) - -inherit distutils-r1 eutils - -MY_PN="Pmv" -MY_P="${MY_PN}-${PV/_rc3/}" - -DESCRIPTION="MGLTools Plugin -- Pmv" -HOMEPAGE="http://mgltools.scripps.edu" -SRC_URI="http://mgltools.scripps.edu/downloads/tars/releases/REL${PV}/mgltools_source_${PV}.tar.gz" - -LICENSE="MGLTOOLS MPL-1.1" -SLOT="0" -KEYWORDS="~amd64 ~x86" -IUSE="" - -RDEPEND=" - sci-chemistry/mgltools-dejavu[${PYTHON_USEDEP}] - sci-chemistry/mgltools-mglutil[${PYTHON_USEDEP}] - sci-chemistry/mgltools-molkit[${PYTHON_USEDEP}] - sci-chemistry/mgltools-opengltk[${PYTHON_USEDEP}] - sci-chemistry/mgltools-pybabel[${PYTHON_USEDEP}] - sci-chemistry/mgltools-support[${PYTHON_USEDEP}] - " -DEPEND="${RDEPEND} - dev-lang/swig" - -S="${WORKDIR}"/${MY_P} - -DOCS=( Pmv/RELNOTES Pmv/doc ) - -src_unpack() { - tar xzpf "${DISTDIR}"/${A} mgltools_source_${PV/_/}/MGLPACKS/${MY_P}.tar.gz || die - tar xzpf mgltools_source_${PV/_/}/MGLPACKS/${MY_P}.tar.gz || die -} - -python_prepare_all() { - local PATCHES=( "${FILESDIR}"/${PN}-1.5.6_rc2-code-fix.patch ) - ecvs_clean - find "${S}" -name LICENSE -type f -delete || die - - sed \ - -e 's:^.*CVS:#&1:g' \ - -e 's:^.*LICENSE:#&1:g' \ - -i "${S}"/MANIFEST.in || die - distutils-r1_python_prepare_all -} diff --git a/sci-chemistry/mgltools-pyautodock/Manifest b/sci-chemistry/mgltools-pyautodock/Manifest deleted file mode 100644 index 366b14ae4..000000000 --- a/sci-chemistry/mgltools-pyautodock/Manifest +++ /dev/null @@ -1 +0,0 @@ -DIST mgltools_source_1.5.6.tar.gz 40275811 BLAKE2B 98a2d71f33fc92233f1082637b54d63a180b6cf1fa8cc052cb497380ba1ea4c8bb1af023d492acfcbf11e23c33f4af7d297eada113838cb6f0133a55684546f3 SHA512 4ed956197f08b7c3779f0bb39393b40cdaff3461071b48815200c6ad0dce2de87375cda96fe20d3ace4ab81ba6b8cdb50b58d82f5e5b54fe2c7751201ff2f63e diff --git a/sci-chemistry/mgltools-pyautodock/metadata.xml b/sci-chemistry/mgltools-pyautodock/metadata.xml deleted file mode 100644 index da36ecbfc..000000000 --- a/sci-chemistry/mgltools-pyautodock/metadata.xml +++ /dev/null @@ -1,8 +0,0 @@ -<?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> -<pkgmetadata> - <maintainer type="project"> - <email>sci-chemistry@gentoo.org</email> - <name>Gentoo Chemistry Project</name> - </maintainer> -</pkgmetadata> diff --git a/sci-chemistry/mgltools-pyautodock/mgltools-pyautodock-1.5.6.ebuild b/sci-chemistry/mgltools-pyautodock/mgltools-pyautodock-1.5.6.ebuild deleted file mode 100644 index 07f3dd8de..000000000 --- a/sci-chemistry/mgltools-pyautodock/mgltools-pyautodock-1.5.6.ebuild +++ /dev/null @@ -1,42 +0,0 @@ -# Copyright 1999-2015 Gentoo Foundation -# Distributed under the terms of the GNU General Public License v2 - -EAPI=5 - -PYTHON_COMPAT=( python2_7 ) - -inherit distutils-r1 eutils - -MY_PN="PyAutoDock" -MY_P="${MY_PN}-${PV/_rc3/}" - -DESCRIPTION="MGLTools Plugin -- PyAutoDock" -HOMEPAGE="http://mgltools.scripps.edu" -SRC_URI="http://mgltools.scripps.edu/downloads/tars/releases/REL${PV}/mgltools_source_${PV}.tar.gz" - -LICENSE="MGLTOOLS MPL-1.1" -SLOT="0" -KEYWORDS="~amd64 ~x86" -IUSE="" - -RDEPEND="" -DEPEND="${RDEPEND} - dev-lang/swig" - -S="${WORKDIR}"/${MY_P} - -src_unpack() { - tar xzpf "${DISTDIR}"/${A} mgltools_source_${PV/_/}/MGLPACKS/${MY_P}.tar.gz || die - tar xzpf mgltools_source_${PV/_/}/MGLPACKS/${MY_P}.tar.gz || die -} - -python_prepare_all() { - ecvs_clean - find "${S}" -name LICENSE -type f -delete || die - - sed \ - -e 's:^.*CVS:#&1:g' \ - -e 's:^.*LICENSE:#&1:g' \ - -i "${S}"/MANIFEST.in || die - distutils-r1_python_prepare_all -} diff --git a/sci-chemistry/mgltools-pybabel/Manifest b/sci-chemistry/mgltools-pybabel/Manifest deleted file mode 100644 index 366b14ae4..000000000 --- a/sci-chemistry/mgltools-pybabel/Manifest +++ /dev/null @@ -1 +0,0 @@ -DIST mgltools_source_1.5.6.tar.gz 40275811 BLAKE2B 98a2d71f33fc92233f1082637b54d63a180b6cf1fa8cc052cb497380ba1ea4c8bb1af023d492acfcbf11e23c33f4af7d297eada113838cb6f0133a55684546f3 SHA512 4ed956197f08b7c3779f0bb39393b40cdaff3461071b48815200c6ad0dce2de87375cda96fe20d3ace4ab81ba6b8cdb50b58d82f5e5b54fe2c7751201ff2f63e diff --git a/sci-chemistry/mgltools-pybabel/metadata.xml b/sci-chemistry/mgltools-pybabel/metadata.xml deleted file mode 100644 index da36ecbfc..000000000 --- a/sci-chemistry/mgltools-pybabel/metadata.xml +++ /dev/null @@ -1,8 +0,0 @@ -<?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> -<pkgmetadata> - <maintainer type="project"> - <email>sci-chemistry@gentoo.org</email> - <name>Gentoo Chemistry Project</name> - </maintainer> -</pkgmetadata> diff --git a/sci-chemistry/mgltools-pybabel/mgltools-pybabel-1.5.6.ebuild b/sci-chemistry/mgltools-pybabel/mgltools-pybabel-1.5.6.ebuild deleted file mode 100644 index a619ad235..000000000 --- a/sci-chemistry/mgltools-pybabel/mgltools-pybabel-1.5.6.ebuild +++ /dev/null @@ -1,44 +0,0 @@ -# Copyright 1999-2015 Gentoo Foundation -# Distributed under the terms of the GNU General Public License v2 - -EAPI=5 - -PYTHON_COMPAT=( python2_7 ) - -inherit distutils-r1 eutils - -MY_PN="PyBabel" -MY_P="${MY_PN}-${PV/_rc3/}" - -DESCRIPTION="MGLTools Plugin -- PyBabel" -HOMEPAGE="http://mgltools.scripps.edu" -SRC_URI="http://mgltools.scripps.edu/downloads/tars/releases/REL${PV}/mgltools_source_${PV}.tar.gz" - -LICENSE="MGLTOOLS MPL-1.1" -SLOT="0" -KEYWORDS="~amd64 ~x86" -IUSE="" - -RDEPEND="" -DEPEND="${RDEPEND} - dev-lang/swig" - -S="${WORKDIR}"/${MY_P} - -DOCS=( PyBabel/RELNOTES ) - -src_unpack() { - tar xzpf "${DISTDIR}"/${A} mgltools_source_${PV/_/}/MGLPACKS/${MY_P}.tar.gz || die - tar xzpf mgltools_source_${PV/_/}/MGLPACKS/${MY_P}.tar.gz || die -} - -python_prepare_all() { - ecvs_clean - find "${S}" -name LICENSE -type f -delete || die - - sed \ - -e 's:^.*CVS:#&1:g' \ - -e 's:^.*LICENSE:#&1:g' \ - -i "${S}"/MANIFEST.in || die - distutils-r1_python_prepare_all -} diff --git a/sci-chemistry/mgltools-pyglf/Manifest b/sci-chemistry/mgltools-pyglf/Manifest deleted file mode 100644 index 366b14ae4..000000000 --- a/sci-chemistry/mgltools-pyglf/Manifest +++ /dev/null @@ -1 +0,0 @@ -DIST mgltools_source_1.5.6.tar.gz 40275811 BLAKE2B 98a2d71f33fc92233f1082637b54d63a180b6cf1fa8cc052cb497380ba1ea4c8bb1af023d492acfcbf11e23c33f4af7d297eada113838cb6f0133a55684546f3 SHA512 4ed956197f08b7c3779f0bb39393b40cdaff3461071b48815200c6ad0dce2de87375cda96fe20d3ace4ab81ba6b8cdb50b58d82f5e5b54fe2c7751201ff2f63e diff --git a/sci-chemistry/mgltools-pyglf/metadata.xml b/sci-chemistry/mgltools-pyglf/metadata.xml deleted file mode 100644 index da36ecbfc..000000000 --- a/sci-chemistry/mgltools-pyglf/metadata.xml +++ /dev/null @@ -1,8 +0,0 @@ -<?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> -<pkgmetadata> - <maintainer type="project"> - <email>sci-chemistry@gentoo.org</email> - <name>Gentoo Chemistry Project</name> - </maintainer> -</pkgmetadata> diff --git a/sci-chemistry/mgltools-pyglf/mgltools-pyglf-1.5.6.ebuild b/sci-chemistry/mgltools-pyglf/mgltools-pyglf-1.5.6.ebuild deleted file mode 100644 index ddf51d228..000000000 --- a/sci-chemistry/mgltools-pyglf/mgltools-pyglf-1.5.6.ebuild +++ /dev/null @@ -1,42 +0,0 @@ -# Copyright 1999-2015 Gentoo Foundation -# Distributed under the terms of the GNU General Public License v2 - -EAPI=5 - -PYTHON_COMPAT=( python2_7 ) - -inherit distutils-r1 eutils - -MY_PN="pyglf" -MY_P="${MY_PN}-${PV/_rc3/}" - -DESCRIPTION="MGLTools Plugin -- pyglf" -HOMEPAGE="http://mgltools.scripps.edu" -SRC_URI="http://mgltools.scripps.edu/downloads/tars/releases/REL${PV}/mgltools_source_${PV}.tar.gz" - -LICENSE="MGLTOOLS MPL-1.1" -SLOT="0" -KEYWORDS="~amd64 ~x86" -IUSE="" - -RDEPEND="dev-python/numpy[${PYTHON_USEDEP}]" -DEPEND="${RDEPEND} - dev-lang/swig" - -S="${WORKDIR}"/${MY_P} - -src_unpack() { - tar xzpf "${DISTDIR}"/${A} mgltools_source_${PV/_/}/MGLPACKS/${MY_P}.tar.gz || die - tar xzpf mgltools_source_${PV/_/}/MGLPACKS/${MY_P}.tar.gz || die -} - -python_prepare_all() { - ecvs_clean - find "${S}" -name LICENSE -type f -delete || die - - sed \ - -e 's:^.*CVS:#&1:g' \ - -e 's:^.*LICENSE:#&1:g' \ - -i "${S}"/MANIFEST.in || die - distutils-r1_python_prepare_all -} diff --git a/sci-chemistry/mgltools-qslimlib/Manifest b/sci-chemistry/mgltools-qslimlib/Manifest deleted file mode 100644 index 366b14ae4..000000000 --- a/sci-chemistry/mgltools-qslimlib/Manifest +++ /dev/null @@ -1 +0,0 @@ -DIST mgltools_source_1.5.6.tar.gz 40275811 BLAKE2B 98a2d71f33fc92233f1082637b54d63a180b6cf1fa8cc052cb497380ba1ea4c8bb1af023d492acfcbf11e23c33f4af7d297eada113838cb6f0133a55684546f3 SHA512 4ed956197f08b7c3779f0bb39393b40cdaff3461071b48815200c6ad0dce2de87375cda96fe20d3ace4ab81ba6b8cdb50b58d82f5e5b54fe2c7751201ff2f63e diff --git a/sci-chemistry/mgltools-qslimlib/files/1.5.4-gcc4.3.patch b/sci-chemistry/mgltools-qslimlib/files/1.5.4-gcc4.3.patch deleted file mode 100644 index 5305a9004..000000000 --- a/sci-chemistry/mgltools-qslimlib/files/1.5.4-gcc4.3.patch +++ /dev/null @@ -1,52 +0,0 @@ ---- QSlimLib-1.5.4/src/mixkit/MxDynBlock.h 2009-05-18 22:04:02.783721647 +0200 -+++ QSlimLib-1.5.4/src/mixkit/MxDynBlock.h.new 2009-05-18 22:14:07.010554394 +0200 -@@ -35,7 +35,7 @@ - - void room_for(int len) - { -- if( length()<len ) resize(len); -+ if( length()<len ) this->resize(len); - fill = len; - } - ---- QSlimLib-1.5.4/src/mixkit/MxDynBlock.h 2009-05-18 22:20:40.238540252 +0200 -+++ QSlimLib-1.5.4/src/mixkit/MxDynBlock.h.new 2009-05-18 22:21:22.416124721 +0200 -@@ -62,8 +62,8 @@ - // - int size() const { return length(); } - -- typename MxBlock<T>::iterator end() { return begin()+size(); } -- typename MxBlock<T>::const_iterator end() const { return begin()+size(); } -+ typename MxBlock<T>::iterator end() { return this->begin()+size(); } -+ typename MxBlock<T>::const_iterator end() const { return this->begin()+size(); } - - void push_back(const T& t) { add(t); } - }; ---- QSlimLib-1.5.4/src/mixkit/MxStack.h 2004-10-25 23:02:10.000000000 +0200 -+++ QSlimLib-1.5.4/src/mixkit/MxStack.h.new 2009-05-18 22:25:01.804175361 +0200 -@@ -26,12 +26,12 @@ - MxStack(const T& val, unsigned int n) : MxDynBlock<T>(n) - { push(val); } - -- T& top() { return last(); } -- const T& top() const { return last(); } -+ T& top() { return this->last(); } -+ const T& top() const { return this->last(); } - -- bool is_empty() { return length()==0; } -+ bool is_empty() { return this->length()==0; } - -- T& pop() { return drop(); } -+ T& pop() { return this->drop(); } - - void push(const T& val) { add(val); } - // -@@ -41,7 +41,7 @@ - // broken! The top() will grab a pointer into the block, - // but the add() may reallocate the block before doing the - // assignment. Thus, the pointer will become invalid. -- void push() { add(); top() = (*this)[length()-2]; } -+ void push() { this->add(); top() = (*this)[this->length()-2]; } - }; - - // MXSTACK_INCLUDED diff --git a/sci-chemistry/mgltools-qslimlib/files/1.5.4-gcc4.7.patch b/sci-chemistry/mgltools-qslimlib/files/1.5.4-gcc4.7.patch deleted file mode 100644 index 5e94b74d1..000000000 --- a/sci-chemistry/mgltools-qslimlib/files/1.5.4-gcc4.7.patch +++ /dev/null @@ -1,30 +0,0 @@ - src/mixkit/MxDynBlock.h | 2 +- - src/mixkit/MxStack.h | 2 +- - 2 files changed, 2 insertions(+), 2 deletions(-) - -diff --git a/src/mixkit/MxDynBlock.h b/src/mixkit/MxDynBlock.h -index 51cc89b..4e313d2 100644 ---- a/src/mixkit/MxDynBlock.h -+++ b/src/mixkit/MxDynBlock.h -@@ -41,7 +41,7 @@ public: - - T& add() - { -- if( length()==total_space() ) resize(total_space() * 2); -+ if( length()==total_space() ) this->resize(total_space() * 2); - fill++; - return last(); - } -diff --git a/src/mixkit/MxStack.h b/src/mixkit/MxStack.h -index 9ed9a05..1275ddd 100644 ---- a/src/mixkit/MxStack.h -+++ b/src/mixkit/MxStack.h -@@ -33,7 +33,7 @@ public: - - T& pop() { return this->drop(); } - -- void push(const T& val) { add(val); } -+ void push(const T& val) { this->add(val); } - // - // NOTE: In this code, it is *crucial* that we do the add() and - // assignment in separate steps. The obvious alternative diff --git a/sci-chemistry/mgltools-qslimlib/metadata.xml b/sci-chemistry/mgltools-qslimlib/metadata.xml deleted file mode 100644 index da36ecbfc..000000000 --- a/sci-chemistry/mgltools-qslimlib/metadata.xml +++ /dev/null @@ -1,8 +0,0 @@ -<?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> -<pkgmetadata> - <maintainer type="project"> - <email>sci-chemistry@gentoo.org</email> - <name>Gentoo Chemistry Project</name> - </maintainer> -</pkgmetadata> diff --git a/sci-chemistry/mgltools-qslimlib/mgltools-qslimlib-1.5.6.ebuild b/sci-chemistry/mgltools-qslimlib/mgltools-qslimlib-1.5.6.ebuild deleted file mode 100644 index e33e5f6fb..000000000 --- a/sci-chemistry/mgltools-qslimlib/mgltools-qslimlib-1.5.6.ebuild +++ /dev/null @@ -1,46 +0,0 @@ -# Copyright 1999-2015 Gentoo Foundation -# Distributed under the terms of the GNU General Public License v2 - -EAPI=5 - -PYTHON_COMPAT=( python2_7 ) - -inherit distutils-r1 eutils - -MY_PN="QSlimLib" -MY_P="${MY_PN}-${PV/_rc3/}" - -DESCRIPTION="MGLTools Plugin -- QSlimLib" -HOMEPAGE="http://mgltools.scripps.edu" -SRC_URI="http://mgltools.scripps.edu/downloads/tars/releases/REL${PV}/mgltools_source_${PV}.tar.gz" - -LICENSE="MGLTOOLS MPL-1.1" -SLOT="0" -KEYWORDS="~amd64 ~x86" -IUSE="" - -RDEPEND="dev-python/numpy[${PYTHON_USEDEP}]" -DEPEND="${RDEPEND} - dev-lang/swig" - -S="${WORKDIR}"/${MY_P} - -src_unpack() { - tar xzpf "${DISTDIR}"/${A} mgltools_source_${PV/_/}/MGLPACKS/${MY_P}.tar.gz || die - tar xzpf mgltools_source_${PV/_/}/MGLPACKS/${MY_P}.tar.gz || die -} - -python_prepare_all() { - local PATCHES=( - "${FILESDIR}"/1.5.4-gcc4.3.patch - "${FILESDIR}"/1.5.4-gcc4.7.patch - ) - ecvs_clean - find "${S}" -name LICENSE -type f -delete || die - - sed \ - -e 's:^.*CVS:#&1:g' \ - -e 's:^.*LICENSE:#&1:g' \ - -i "${S}"/MANIFEST.in || die - distutils-r1_python_prepare_all -} diff --git a/sci-chemistry/mgltools-scenario2/Manifest b/sci-chemistry/mgltools-scenario2/Manifest deleted file mode 100644 index 366b14ae4..000000000 --- a/sci-chemistry/mgltools-scenario2/Manifest +++ /dev/null @@ -1 +0,0 @@ -DIST mgltools_source_1.5.6.tar.gz 40275811 BLAKE2B 98a2d71f33fc92233f1082637b54d63a180b6cf1fa8cc052cb497380ba1ea4c8bb1af023d492acfcbf11e23c33f4af7d297eada113838cb6f0133a55684546f3 SHA512 4ed956197f08b7c3779f0bb39393b40cdaff3461071b48815200c6ad0dce2de87375cda96fe20d3ace4ab81ba6b8cdb50b58d82f5e5b54fe2c7751201ff2f63e diff --git a/sci-chemistry/mgltools-scenario2/metadata.xml b/sci-chemistry/mgltools-scenario2/metadata.xml deleted file mode 100644 index da36ecbfc..000000000 --- a/sci-chemistry/mgltools-scenario2/metadata.xml +++ /dev/null @@ -1,8 +0,0 @@ -<?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> -<pkgmetadata> - <maintainer type="project"> - <email>sci-chemistry@gentoo.org</email> - <name>Gentoo Chemistry Project</name> - </maintainer> -</pkgmetadata> diff --git a/sci-chemistry/mgltools-scenario2/mgltools-scenario2-1.5.6.ebuild b/sci-chemistry/mgltools-scenario2/mgltools-scenario2-1.5.6.ebuild deleted file mode 100644 index 79d4c2583..000000000 --- a/sci-chemistry/mgltools-scenario2/mgltools-scenario2-1.5.6.ebuild +++ /dev/null @@ -1,45 +0,0 @@ -# Copyright 1999-2015 Gentoo Foundation -# Distributed under the terms of the GNU General Public License v2 - -EAPI=5 - -PYTHON_COMPAT=( python2_7 ) - -inherit distutils-r1 eutils - -MY_PN="Scenario2" -MY_P="${MY_PN}-${PV/_rc3/}" - -DESCRIPTION="MGLTools Plugin -- Scenario2" -HOMEPAGE="http://mgltools.scripps.edu" -SRC_URI="http://mgltools.scripps.edu/downloads/tars/releases/REL${PV}/mgltools_source_${PV}.tar.gz" - -LICENSE="MGLTOOLS MPL-1.1" -SLOT="0" -KEYWORDS="~amd64 ~x86" -IUSE="" - -RDEPEND=" - dev-python/simpy[${PYTHON_USEDEP}] - virtual/python-pmw[${PYTHON_USEDEP}] - " -DEPEND="${RDEPEND} - dev-lang/swig" - -S="${WORKDIR}"/${MY_P} - -src_unpack() { - tar xzpf "${DISTDIR}"/${A} mgltools_source_${PV/_/}/MGLPACKS/${MY_P}.tar.gz || die - tar xzpf mgltools_source_${PV/_/}/MGLPACKS/${MY_P}.tar.gz || die -} - -python_prepare_all() { - ecvs_clean - find "${S}" -name LICENSE -type f -delete || die - - sed \ - -e 's:^.*CVS:#&1:g' \ - -e 's:^.*LICENSE:#&1:g' \ - -i "${S}"/MANIFEST.in || die - distutils-r1_python_prepare_all -} diff --git a/sci-chemistry/mgltools-sff/Manifest b/sci-chemistry/mgltools-sff/Manifest deleted file mode 100644 index 366b14ae4..000000000 --- a/sci-chemistry/mgltools-sff/Manifest +++ /dev/null @@ -1 +0,0 @@ -DIST mgltools_source_1.5.6.tar.gz 40275811 BLAKE2B 98a2d71f33fc92233f1082637b54d63a180b6cf1fa8cc052cb497380ba1ea4c8bb1af023d492acfcbf11e23c33f4af7d297eada113838cb6f0133a55684546f3 SHA512 4ed956197f08b7c3779f0bb39393b40cdaff3461071b48815200c6ad0dce2de87375cda96fe20d3ace4ab81ba6b8cdb50b58d82f5e5b54fe2c7751201ff2f63e diff --git a/sci-chemistry/mgltools-sff/files/1.5.4-impl-dec.patch b/sci-chemistry/mgltools-sff/files/1.5.4-impl-dec.patch deleted file mode 100644 index 253051992..000000000 --- a/sci-chemistry/mgltools-sff/files/1.5.4-impl-dec.patch +++ /dev/null @@ -1,12 +0,0 @@ -diff --git a/src/bhtree.c b/src/bhtree.c -index 1db701a..cb16afb 100644 ---- a/src/bhtree.c -+++ b/src/bhtree.c -@@ -38,6 +38,7 @@ - */ - #include <stdio.h> - #include <math.h> -+#include <stdlib.h> - #include "bhtree.h" - - /* Barnes - Hut Trees ? */ diff --git a/sci-chemistry/mgltools-sff/metadata.xml b/sci-chemistry/mgltools-sff/metadata.xml deleted file mode 100644 index da36ecbfc..000000000 --- a/sci-chemistry/mgltools-sff/metadata.xml +++ /dev/null @@ -1,8 +0,0 @@ -<?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> -<pkgmetadata> - <maintainer type="project"> - <email>sci-chemistry@gentoo.org</email> - <name>Gentoo Chemistry Project</name> - </maintainer> -</pkgmetadata> diff --git a/sci-chemistry/mgltools-sff/mgltools-sff-1.5.6.ebuild b/sci-chemistry/mgltools-sff/mgltools-sff-1.5.6.ebuild deleted file mode 100644 index 6b81d92dc..000000000 --- a/sci-chemistry/mgltools-sff/mgltools-sff-1.5.6.ebuild +++ /dev/null @@ -1,43 +0,0 @@ -# Copyright 1999-2015 Gentoo Foundation -# Distributed under the terms of the GNU General Public License v2 - -EAPI=5 - -PYTHON_COMPAT=( python2_7 ) - -inherit distutils-r1 eutils - -MY_PN="sff" -MY_P="${MY_PN}-${PV/_rc3/}" - -DESCRIPTION="MGLTools Plugin -- sff" -HOMEPAGE="http://mgltools.scripps.edu" -SRC_URI="http://mgltools.scripps.edu/downloads/tars/releases/REL${PV}/mgltools_source_${PV}.tar.gz" - -LICENSE="MGLTOOLS MPL-1.1" -SLOT="0" -KEYWORDS="~amd64 ~x86" -IUSE="" - -RDEPEND="dev-python/numpy[${PYTHON_USEDEP}]" -DEPEND="${RDEPEND} - dev-lang/swig" - -S="${WORKDIR}"/${MY_P} - -src_unpack() { - tar xzpf "${DISTDIR}"/${A} mgltools_source_${PV/_/}/MGLPACKS/${MY_P}.tar.gz || die - tar xzpf mgltools_source_${PV/_/}/MGLPACKS/${MY_P}.tar.gz || die -} - -python_prepare_all() { - local PATCHES=( "${FILESDIR}"/1.5.4-impl-dec.patch ) - ecvs_clean - find "${S}" -name LICENSE -type f -delete || die - - sed \ - -e 's:^.*CVS:#&1:g' \ - -e 's:^.*LICENSE:#&1:g' \ - -i "${S}"/MANIFEST.in || die - distutils-r1_python_prepare_all -} diff --git a/sci-chemistry/mgltools-support/Manifest b/sci-chemistry/mgltools-support/Manifest deleted file mode 100644 index 366b14ae4..000000000 --- a/sci-chemistry/mgltools-support/Manifest +++ /dev/null @@ -1 +0,0 @@ -DIST mgltools_source_1.5.6.tar.gz 40275811 BLAKE2B 98a2d71f33fc92233f1082637b54d63a180b6cf1fa8cc052cb497380ba1ea4c8bb1af023d492acfcbf11e23c33f4af7d297eada113838cb6f0133a55684546f3 SHA512 4ed956197f08b7c3779f0bb39393b40cdaff3461071b48815200c6ad0dce2de87375cda96fe20d3ace4ab81ba6b8cdb50b58d82f5e5b54fe2c7751201ff2f63e diff --git a/sci-chemistry/mgltools-support/metadata.xml b/sci-chemistry/mgltools-support/metadata.xml deleted file mode 100644 index da36ecbfc..000000000 --- a/sci-chemistry/mgltools-support/metadata.xml +++ /dev/null @@ -1,8 +0,0 @@ -<?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> -<pkgmetadata> - <maintainer type="project"> - <email>sci-chemistry@gentoo.org</email> - <name>Gentoo Chemistry Project</name> - </maintainer> -</pkgmetadata> diff --git a/sci-chemistry/mgltools-support/mgltools-support-1.5.6.ebuild b/sci-chemistry/mgltools-support/mgltools-support-1.5.6.ebuild deleted file mode 100644 index c25bf8a46..000000000 --- a/sci-chemistry/mgltools-support/mgltools-support-1.5.6.ebuild +++ /dev/null @@ -1,42 +0,0 @@ -# Copyright 1999-2015 Gentoo Foundation -# Distributed under the terms of the GNU General Public License v2 - -EAPI=5 - -PYTHON_COMPAT=( python2_7 ) - -inherit distutils-r1 eutils - -MY_PN="Support" -MY_P="${MY_PN}-${PV/_rc3/}" - -DESCRIPTION="MGLTools Plugin -- Support" -HOMEPAGE="http://mgltools.scripps.edu" -SRC_URI="http://mgltools.scripps.edu/downloads/tars/releases/REL${PV}/mgltools_source_${PV}.tar.gz" - -LICENSE="MGLTOOLS MPL-1.1" -SLOT="0" -KEYWORDS="~amd64 ~x86" -IUSE="" - -RDEPEND="" -DEPEND="${RDEPEND} - dev-lang/swig" - -S="${WORKDIR}"/${MY_P} - -src_unpack() { - tar xzpf "${DISTDIR}"/${A} mgltools_source_${PV/_/}/MGLPACKS/${MY_P}.tar.gz || die - tar xzpf mgltools_source_${PV/_/}/MGLPACKS/${MY_P}.tar.gz || die -} - -python_prepare_all() { - ecvs_clean - find "${S}" -name LICENSE -type f -delete || die - - sed \ - -e 's:^.*CVS:#&1:g' \ - -e 's:^.*LICENSE:#&1:g' \ - -i "${S}"/MANIFEST.in || die - distutils-r1_python_prepare_all -} diff --git a/sci-chemistry/mgltools-symserv/Manifest b/sci-chemistry/mgltools-symserv/Manifest deleted file mode 100644 index 366b14ae4..000000000 --- a/sci-chemistry/mgltools-symserv/Manifest +++ /dev/null @@ -1 +0,0 @@ -DIST mgltools_source_1.5.6.tar.gz 40275811 BLAKE2B 98a2d71f33fc92233f1082637b54d63a180b6cf1fa8cc052cb497380ba1ea4c8bb1af023d492acfcbf11e23c33f4af7d297eada113838cb6f0133a55684546f3 SHA512 4ed956197f08b7c3779f0bb39393b40cdaff3461071b48815200c6ad0dce2de87375cda96fe20d3ace4ab81ba6b8cdb50b58d82f5e5b54fe2c7751201ff2f63e diff --git a/sci-chemistry/mgltools-symserv/metadata.xml b/sci-chemistry/mgltools-symserv/metadata.xml deleted file mode 100644 index da36ecbfc..000000000 --- a/sci-chemistry/mgltools-symserv/metadata.xml +++ /dev/null @@ -1,8 +0,0 @@ -<?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> -<pkgmetadata> - <maintainer type="project"> - <email>sci-chemistry@gentoo.org</email> - <name>Gentoo Chemistry Project</name> - </maintainer> -</pkgmetadata> diff --git a/sci-chemistry/mgltools-symserv/mgltools-symserv-1.5.6.ebuild b/sci-chemistry/mgltools-symserv/mgltools-symserv-1.5.6.ebuild deleted file mode 100644 index 9c1f2c8e2..000000000 --- a/sci-chemistry/mgltools-symserv/mgltools-symserv-1.5.6.ebuild +++ /dev/null @@ -1,42 +0,0 @@ -# Copyright 1999-2015 Gentoo Foundation -# Distributed under the terms of the GNU General Public License v2 - -EAPI=5 - -PYTHON_COMPAT=( python2_7 ) - -inherit distutils-r1 eutils - -MY_PN="symserv" -MY_P="${MY_PN}-${PV/_rc3/}" - -DESCRIPTION="MGLTools Plugin -- symserv" -HOMEPAGE="http://mgltools.scripps.edu" -SRC_URI="http://mgltools.scripps.edu/downloads/tars/releases/REL${PV}/mgltools_source_${PV}.tar.gz" - -LICENSE="MGLTOOLS MPL-1.1" -SLOT="0" -KEYWORDS="~amd64 ~x86" -IUSE="" - -RDEPEND="" -DEPEND="${RDEPEND} - dev-lang/swig" - -S="${WORKDIR}"/${MY_P} - -src_unpack() { - tar xzpf "${DISTDIR}"/${A} mgltools_source_${PV/_/}/MGLPACKS/${MY_P}.tar.gz || die - tar xzpf mgltools_source_${PV/_/}/MGLPACKS/${MY_P}.tar.gz || die -} - -python_prepare_all() { - ecvs_clean - find "${S}" -name LICENSE -type f -delete || die - - sed \ - -e 's:^.*CVS:#&1:g' \ - -e 's:^.*LICENSE:#&1:g' \ - -i "${S}"/MANIFEST.in || die - distutils-r1_python_prepare_all -} diff --git a/sci-chemistry/mgltools-utpackages/Manifest b/sci-chemistry/mgltools-utpackages/Manifest deleted file mode 100644 index 366b14ae4..000000000 --- a/sci-chemistry/mgltools-utpackages/Manifest +++ /dev/null @@ -1 +0,0 @@ -DIST mgltools_source_1.5.6.tar.gz 40275811 BLAKE2B 98a2d71f33fc92233f1082637b54d63a180b6cf1fa8cc052cb497380ba1ea4c8bb1af023d492acfcbf11e23c33f4af7d297eada113838cb6f0133a55684546f3 SHA512 4ed956197f08b7c3779f0bb39393b40cdaff3461071b48815200c6ad0dce2de87375cda96fe20d3ace4ab81ba6b8cdb50b58d82f5e5b54fe2c7751201ff2f63e diff --git a/sci-chemistry/mgltools-utpackages/files/1.5.4-gcc4.3.patch b/sci-chemistry/mgltools-utpackages/files/1.5.4-gcc4.3.patch deleted file mode 100644 index 24984b360..000000000 --- a/sci-chemistry/mgltools-utpackages/files/1.5.4-gcc4.3.patch +++ /dev/null @@ -1,11 +0,0 @@ ---- UTpackages-1.5.4/UTisocontourDIST/src/queue.h 2004-06-16 21:46:53.000000000 +0200 -+++ UTpackages-1.5.4/UTisocontourDIST/src/queue.h.new 2009-05-28 21:40:02.000000000 +0200 -@@ -17,7 +17,7 @@ - #define __QUEUE_H - - #include "utilities.h" -- -+#include <algorithm> - - //@ManMemo: A templated FIFO queue - /*@Doc: Implementation of a FIFO queue based on a circular array. diff --git a/sci-chemistry/mgltools-utpackages/metadata.xml b/sci-chemistry/mgltools-utpackages/metadata.xml deleted file mode 100644 index da36ecbfc..000000000 --- a/sci-chemistry/mgltools-utpackages/metadata.xml +++ /dev/null @@ -1,8 +0,0 @@ -<?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> -<pkgmetadata> - <maintainer type="project"> - <email>sci-chemistry@gentoo.org</email> - <name>Gentoo Chemistry Project</name> - </maintainer> -</pkgmetadata> diff --git a/sci-chemistry/mgltools-utpackages/mgltools-utpackages-1.5.6.ebuild b/sci-chemistry/mgltools-utpackages/mgltools-utpackages-1.5.6.ebuild deleted file mode 100644 index e8fbc41e6..000000000 --- a/sci-chemistry/mgltools-utpackages/mgltools-utpackages-1.5.6.ebuild +++ /dev/null @@ -1,42 +0,0 @@ -# Copyright 1999-2015 Gentoo Foundation -# Distributed under the terms of the GNU General Public License v2 - -EAPI=5 - -PYTHON_COMPAT=( python2_7 ) - -inherit distutils-r1 eutils - -MY_PN="UTpackages" -MY_P="${MY_PN}-${PV/_rc3/}" - -DESCRIPTION="MGLTools Plugin -- UTpackages" -HOMEPAGE="http://mgltools.scripps.edu" -SRC_URI="http://mgltools.scripps.edu/downloads/tars/releases/REL${PV}/mgltools_source_${PV}.tar.gz" - -LICENSE="MGLTOOLS MPL-1.1 UTPackages" -SLOT="0" -KEYWORDS="~amd64 ~x86" -IUSE="" - -RDEPEND="dev-python/numpy[${PYTHON_USEDEP}]" -DEPEND="${RDEPEND} - dev-lang/swig" - -S="${WORKDIR}"/${MY_P} - -src_unpack() { - tar xzpf "${DISTDIR}"/${A} mgltools_source_${PV/_/}/MGLPACKS/${MY_P}.tar.gz || die - tar xzpf mgltools_source_${PV/_/}/MGLPACKS/${MY_P}.tar.gz || die -} - -python_prepare_all() { - ecvs_clean - find "${S}" -name LICENSE -type f -delete || die - - sed \ - -e 's:^.*CVS:#&1:g' \ - -e 's:^.*LICENSE:#&1:g' \ - -i "${S}"/MANIFEST.in || die - distutils-r1_python_prepare_all -} diff --git a/sci-chemistry/mgltools-viewer-framework/Manifest b/sci-chemistry/mgltools-viewer-framework/Manifest deleted file mode 100644 index 366b14ae4..000000000 --- a/sci-chemistry/mgltools-viewer-framework/Manifest +++ /dev/null @@ -1 +0,0 @@ -DIST mgltools_source_1.5.6.tar.gz 40275811 BLAKE2B 98a2d71f33fc92233f1082637b54d63a180b6cf1fa8cc052cb497380ba1ea4c8bb1af023d492acfcbf11e23c33f4af7d297eada113838cb6f0133a55684546f3 SHA512 4ed956197f08b7c3779f0bb39393b40cdaff3461071b48815200c6ad0dce2de87375cda96fe20d3ace4ab81ba6b8cdb50b58d82f5e5b54fe2c7751201ff2f63e diff --git a/sci-chemistry/mgltools-viewer-framework/metadata.xml b/sci-chemistry/mgltools-viewer-framework/metadata.xml deleted file mode 100644 index da36ecbfc..000000000 --- a/sci-chemistry/mgltools-viewer-framework/metadata.xml +++ /dev/null @@ -1,8 +0,0 @@ -<?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> -<pkgmetadata> - <maintainer type="project"> - <email>sci-chemistry@gentoo.org</email> - <name>Gentoo Chemistry Project</name> - </maintainer> -</pkgmetadata> diff --git a/sci-chemistry/mgltools-viewer-framework/mgltools-viewer-framework-1.5.6.ebuild b/sci-chemistry/mgltools-viewer-framework/mgltools-viewer-framework-1.5.6.ebuild deleted file mode 100644 index eabcc214f..000000000 --- a/sci-chemistry/mgltools-viewer-framework/mgltools-viewer-framework-1.5.6.ebuild +++ /dev/null @@ -1,47 +0,0 @@ -# Copyright 1999-2015 Gentoo Foundation -# Distributed under the terms of the GNU General Public License v2 - -EAPI=5 - -PYTHON_COMPAT=( python2_7 ) - -inherit distutils-r1 eutils - -MY_PN="ViewerFramework" -MY_P="${MY_PN}-${PV/_rc3/}" - -DESCRIPTION="MGLTools Plugin -- ViewerFramework" -HOMEPAGE="http://mgltools.scripps.edu" -SRC_URI="http://mgltools.scripps.edu/downloads/tars/releases/REL${PV}/mgltools_source_${PV}.tar.gz" - -LICENSE="MGLTOOLS MPL-1.1" -SLOT="0" -KEYWORDS="~amd64 ~x86" -IUSE="" - -RDEPEND="" -DEPEND="${RDEPEND} - dev-lang/swig" - -S="${WORKDIR}"/${MY_P} - -DOCS=( ViewerFramework/RELNOTES ) - -src_unpack() { - tar xzpf "${DISTDIR}"/${A} mgltools_source_${PV/_/}/MGLPACKS/${MY_P}.tar.gz || die - tar xzpf mgltools_source_${PV/_/}/MGLPACKS/${MY_P}.tar.gz || die -} - -python_prepare_all() { - ecvs_clean - find "${S}" -name LICENSE -type f -delete || die - - sed \ - -e 's:^.*CVS:#&1:g' \ - -e 's:^.*LICENSE:#&1:g' \ - -i "${S}"/MANIFEST.in || die - sed \ - -e '/__debug__/d' \ - -i ViewerFramework/VF.py || die - distutils-r1_python_prepare_all -} diff --git a/sci-chemistry/mgltools-vision/Manifest b/sci-chemistry/mgltools-vision/Manifest deleted file mode 100644 index 366b14ae4..000000000 --- a/sci-chemistry/mgltools-vision/Manifest +++ /dev/null @@ -1 +0,0 @@ -DIST mgltools_source_1.5.6.tar.gz 40275811 BLAKE2B 98a2d71f33fc92233f1082637b54d63a180b6cf1fa8cc052cb497380ba1ea4c8bb1af023d492acfcbf11e23c33f4af7d297eada113838cb6f0133a55684546f3 SHA512 4ed956197f08b7c3779f0bb39393b40cdaff3461071b48815200c6ad0dce2de87375cda96fe20d3ace4ab81ba6b8cdb50b58d82f5e5b54fe2c7751201ff2f63e diff --git a/sci-chemistry/mgltools-vision/metadata.xml b/sci-chemistry/mgltools-vision/metadata.xml deleted file mode 100644 index da36ecbfc..000000000 --- a/sci-chemistry/mgltools-vision/metadata.xml +++ /dev/null @@ -1,8 +0,0 @@ -<?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> -<pkgmetadata> - <maintainer type="project"> - <email>sci-chemistry@gentoo.org</email> - <name>Gentoo Chemistry Project</name> - </maintainer> -</pkgmetadata> diff --git a/sci-chemistry/mgltools-vision/mgltools-vision-1.5.6.ebuild b/sci-chemistry/mgltools-vision/mgltools-vision-1.5.6.ebuild deleted file mode 100644 index f50816ffd..000000000 --- a/sci-chemistry/mgltools-vision/mgltools-vision-1.5.6.ebuild +++ /dev/null @@ -1,53 +0,0 @@ -# Copyright 1999-2015 Gentoo Foundation -# Distributed under the terms of the GNU General Public License v2 - -EAPI=5 - -PYTHON_COMPAT=( python2_7 ) - -inherit distutils-r1 eutils - -MY_PN="Vision" -MY_P="${MY_PN}-${PV/_rc3/}" - -DESCRIPTION="MGLTools Plugin -- Vision" -HOMEPAGE="http://mgltools.scripps.edu" -SRC_URI="http://mgltools.scripps.edu/downloads/tars/releases/REL${PV}/mgltools_source_${PV}.tar.gz" - -LICENSE="MGLTOOLS MPL-1.1" -SLOT="0" -KEYWORDS="~amd64 ~x86" -IUSE="" - -RDEPEND="dev-python/matplotlib[tk,${PYTHON_USEDEP}]" -DEPEND="${RDEPEND} - dev-lang/swig" - -S="${WORKDIR}"/${MY_P} - -DOCS=( Vision/FAQ.txt ) - -src_unpack() { - tar xzpf "${DISTDIR}"/${A} mgltools_source_${PV/_/}/MGLPACKS/${MY_P}.tar.gz || die - tar xzpf mgltools_source_${PV/_/}/MGLPACKS/${MY_P}.tar.gz || die -} - -python_prepare_all() { - ecvs_clean - find "${S}" -name LICENSE -type f -delete || die - - sed \ - -e 's:^.*CVS:#&1:g' \ - -e 's:^.*LICENSE:#&1:g' \ - -i "${S}"/MANIFEST.in || die - distutils-r1_python_prepare_all -} - -python_install_all() { - distutils-r1_python_install_all - - sed '1s:^.*$:#!/usr/bin/python:g' -i Vision/bin/runVision || die - dobin Vision/bin/runVision - - dohtml Vision/FAQ.html -} diff --git a/sci-chemistry/mgltools-visionlib/Manifest b/sci-chemistry/mgltools-visionlib/Manifest deleted file mode 100644 index 366b14ae4..000000000 --- a/sci-chemistry/mgltools-visionlib/Manifest +++ /dev/null @@ -1 +0,0 @@ -DIST mgltools_source_1.5.6.tar.gz 40275811 BLAKE2B 98a2d71f33fc92233f1082637b54d63a180b6cf1fa8cc052cb497380ba1ea4c8bb1af023d492acfcbf11e23c33f4af7d297eada113838cb6f0133a55684546f3 SHA512 4ed956197f08b7c3779f0bb39393b40cdaff3461071b48815200c6ad0dce2de87375cda96fe20d3ace4ab81ba6b8cdb50b58d82f5e5b54fe2c7751201ff2f63e diff --git a/sci-chemistry/mgltools-visionlib/metadata.xml b/sci-chemistry/mgltools-visionlib/metadata.xml deleted file mode 100644 index da36ecbfc..000000000 --- a/sci-chemistry/mgltools-visionlib/metadata.xml +++ /dev/null @@ -1,8 +0,0 @@ -<?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> -<pkgmetadata> - <maintainer type="project"> - <email>sci-chemistry@gentoo.org</email> - <name>Gentoo Chemistry Project</name> - </maintainer> -</pkgmetadata> diff --git a/sci-chemistry/mgltools-visionlib/mgltools-visionlib-1.5.6.ebuild b/sci-chemistry/mgltools-visionlib/mgltools-visionlib-1.5.6.ebuild deleted file mode 100644 index e141c98a9..000000000 --- a/sci-chemistry/mgltools-visionlib/mgltools-visionlib-1.5.6.ebuild +++ /dev/null @@ -1,42 +0,0 @@ -# Copyright 1999-2015 Gentoo Foundation -# Distributed under the terms of the GNU General Public License v2 - -EAPI=5 - -PYTHON_COMPAT=( python2_7 ) - -inherit distutils-r1 eutils - -MY_PN="VisionLibraries" -MY_P="${MY_PN}-${PV/_rc3/}" - -DESCRIPTION="MGLTools Plugin -- VisionLibraries" -HOMEPAGE="http://mgltools.scripps.edu" -SRC_URI="http://mgltools.scripps.edu/downloads/tars/releases/REL${PV}/mgltools_source_${PV}.tar.gz" - -LICENSE="MGLTOOLS MPL-1.1" -SLOT="0" -KEYWORDS="~amd64 ~x86" -IUSE="" - -RDEPEND="" -DEPEND="${RDEPEND} - dev-lang/swig" - -S="${WORKDIR}"/${MY_P} - -src_unpack() { - tar xzpf "${DISTDIR}"/${A} mgltools_source_${PV/_/}/MGLPACKS/${MY_P}.tar.gz || die - tar xzpf mgltools_source_${PV/_/}/MGLPACKS/${MY_P}.tar.gz || die -} - -python_prepare_all() { - ecvs_clean - find "${S}" -name LICENSE -type f -delete || die - - sed \ - -e 's:^.*CVS:#&1:g' \ - -e 's:^.*LICENSE:#&1:g' \ - -i "${S}"/MANIFEST.in || die - distutils-r1_python_prepare_all -} diff --git a/sci-chemistry/mgltools-volume/Manifest b/sci-chemistry/mgltools-volume/Manifest deleted file mode 100644 index 366b14ae4..000000000 --- a/sci-chemistry/mgltools-volume/Manifest +++ /dev/null @@ -1 +0,0 @@ -DIST mgltools_source_1.5.6.tar.gz 40275811 BLAKE2B 98a2d71f33fc92233f1082637b54d63a180b6cf1fa8cc052cb497380ba1ea4c8bb1af023d492acfcbf11e23c33f4af7d297eada113838cb6f0133a55684546f3 SHA512 4ed956197f08b7c3779f0bb39393b40cdaff3461071b48815200c6ad0dce2de87375cda96fe20d3ace4ab81ba6b8cdb50b58d82f5e5b54fe2c7751201ff2f63e diff --git a/sci-chemistry/mgltools-volume/metadata.xml b/sci-chemistry/mgltools-volume/metadata.xml deleted file mode 100644 index da36ecbfc..000000000 --- a/sci-chemistry/mgltools-volume/metadata.xml +++ /dev/null @@ -1,8 +0,0 @@ -<?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> -<pkgmetadata> - <maintainer type="project"> - <email>sci-chemistry@gentoo.org</email> - <name>Gentoo Chemistry Project</name> - </maintainer> -</pkgmetadata> diff --git a/sci-chemistry/mgltools-volume/mgltools-volume-1.5.6.ebuild b/sci-chemistry/mgltools-volume/mgltools-volume-1.5.6.ebuild deleted file mode 100644 index 33dbaaac8..000000000 --- a/sci-chemistry/mgltools-volume/mgltools-volume-1.5.6.ebuild +++ /dev/null @@ -1,44 +0,0 @@ -# Copyright 1999-2015 Gentoo Foundation -# Distributed under the terms of the GNU General Public License v2 - -EAPI=5 - -PYTHON_COMPAT=( python2_7 ) - -inherit distutils-r1 eutils - -MY_PN="Volume" -MY_P="${MY_PN}-${PV/_rc3/}" - -DESCRIPTION="MGLTools Plugin -- Volume" -HOMEPAGE="http://mgltools.scripps.edu" -SRC_URI="http://mgltools.scripps.edu/downloads/tars/releases/REL${PV}/mgltools_source_${PV}.tar.gz" - -LICENSE="MGLTOOLS MPL-1.1" -SLOT="0" -KEYWORDS="~amd64 ~x86" -IUSE="" - -RDEPEND="" -DEPEND="${RDEPEND} - dev-lang/swig" - -S="${WORKDIR}"/${MY_P} - -DOCS=( Volume/RELNOTES Volume/README Volume/TODO ) - -src_unpack() { - tar xzpf "${DISTDIR}"/${A} mgltools_source_${PV/_/}/MGLPACKS/${MY_P}.tar.gz || die - tar xzpf mgltools_source_${PV/_/}/MGLPACKS/${MY_P}.tar.gz || die -} - -python_prepare_all() { - ecvs_clean - find "${S}" -name LICENSE -type f -delete || die - - sed \ - -e 's:^.*CVS:#&1:g' \ - -e 's:^.*LICENSE:#&1:g' \ - -i "${S}"/MANIFEST.in || die - distutils-r1_python_prepare_all -} diff --git a/sci-chemistry/mgltools-webservices/Manifest b/sci-chemistry/mgltools-webservices/Manifest deleted file mode 100644 index 366b14ae4..000000000 --- a/sci-chemistry/mgltools-webservices/Manifest +++ /dev/null @@ -1 +0,0 @@ -DIST mgltools_source_1.5.6.tar.gz 40275811 BLAKE2B 98a2d71f33fc92233f1082637b54d63a180b6cf1fa8cc052cb497380ba1ea4c8bb1af023d492acfcbf11e23c33f4af7d297eada113838cb6f0133a55684546f3 SHA512 4ed956197f08b7c3779f0bb39393b40cdaff3461071b48815200c6ad0dce2de87375cda96fe20d3ace4ab81ba6b8cdb50b58d82f5e5b54fe2c7751201ff2f63e diff --git a/sci-chemistry/mgltools-webservices/metadata.xml b/sci-chemistry/mgltools-webservices/metadata.xml deleted file mode 100644 index da36ecbfc..000000000 --- a/sci-chemistry/mgltools-webservices/metadata.xml +++ /dev/null @@ -1,8 +0,0 @@ -<?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> -<pkgmetadata> - <maintainer type="project"> - <email>sci-chemistry@gentoo.org</email> - <name>Gentoo Chemistry Project</name> - </maintainer> -</pkgmetadata> diff --git a/sci-chemistry/mgltools-webservices/mgltools-webservices-1.5.6.ebuild b/sci-chemistry/mgltools-webservices/mgltools-webservices-1.5.6.ebuild deleted file mode 100644 index 82aea5667..000000000 --- a/sci-chemistry/mgltools-webservices/mgltools-webservices-1.5.6.ebuild +++ /dev/null @@ -1,42 +0,0 @@ -# Copyright 1999-2015 Gentoo Foundation -# Distributed under the terms of the GNU General Public License v2 - -EAPI=5 - -PYTHON_COMPAT=( python2_7 ) - -inherit distutils-r1 eutils - -MY_PN="WebServices" -MY_P="${MY_PN}-${PV/_rc3/}" - -DESCRIPTION="MGLTools Plugin -- WebServices" -HOMEPAGE="http://mgltools.scripps.edu" -SRC_URI="http://mgltools.scripps.edu/downloads/tars/releases/REL${PV}/mgltools_source_${PV}.tar.gz" - -LICENSE="MGLTOOLS MPL-1.1" -SLOT="0" -KEYWORDS="~amd64 ~x86" -IUSE="" - -RDEPEND="dev-python/zsi[${PYTHON_USEDEP}]" -DEPEND="${RDEPEND} - dev-lang/swig" - -S="${WORKDIR}"/${MY_P} - -src_unpack() { - tar xzpf "${DISTDIR}"/${A} mgltools_source_${PV/_/}/MGLPACKS/${MY_P}.tar.gz || die - tar xzpf mgltools_source_${PV/_/}/MGLPACKS/${MY_P}.tar.gz || die -} - -python_prepare_all() { - ecvs_clean - find "${S}" -name LICENSE -type f -delete || die - - sed \ - -e 's:^.*CVS:#&1:g' \ - -e 's:^.*LICENSE:#&1:g' \ - -i "${S}"/MANIFEST.in || die - distutils-r1_python_prepare_all -} |