diff options
| -rw-r--r-- | dev-java/hdf-java/ChangeLog | 6 | ||||
| -rw-r--r-- | dev-java/hdf-java/Manifest | 1 | ||||
| -rw-r--r-- | dev-java/hdf-java/files/hdf-java-2.9-shared.patch | 118 | ||||
| -rw-r--r-- | dev-java/hdf-java/hdf-java-2.9.ebuild | 128 |
4 files changed, 253 insertions, 0 deletions
diff --git a/dev-java/hdf-java/ChangeLog b/dev-java/hdf-java/ChangeLog index 7f87c8257..960087910 100644 --- a/dev-java/hdf-java/ChangeLog +++ b/dev-java/hdf-java/ChangeLog @@ -2,6 +2,12 @@ # Copyright 1999-2012 Gentoo Foundation; Distributed under the GPL v2 # $Header: $ +*hdf-java-2.9 (25 Nov 2012) + + 25 Nov 2012; Andrew Savchenko <bircoph@gmail.com> +hdf-java-2.9.ebuild, + +files/hdf-java-2.9-shared.patch: + Version bump. Sources for older versions are not available. + 23 May 2012; Sébastien Fabbro <bicatali@gentoo.org> hdf-java-2.8.ebuild: add hack for hdf5[mpi] diff --git a/dev-java/hdf-java/Manifest b/dev-java/hdf-java/Manifest index f3e8ea24b..e4d67d5d5 100644 --- a/dev-java/hdf-java/Manifest +++ b/dev-java/hdf-java/Manifest @@ -1,2 +1,3 @@ DIST hdf-java-2.7-src.tar 13209600 SHA256 091c999cf53266ba113bef45a83912b12444624cfe0253d5eb565b95e0832706 SHA512 895dcf69d02d41b2c8ae4ba2ab5dd30be21e320cb11e222deea6ac592374bdb22f3c0d5001fcda30b683dc3d9a59b16de1ead40179d3e211f5181b957a5134f1 WHIRLPOOL 3854db0df6e39b1b12814850bbc4dd6ea36daa7a4fcd4ef20dc11a42ce0b6663fea7f964424c6ff67bb78a901fda60f57570e051d21ca36e6b0686074065c198 DIST hdf-java-2.8-src.tar 13670400 SHA256 bc1b1eb2b9e40c2a23aff295818526ba007cdf8d43bb9a3d1cb117304b56fbb5 SHA512 2109a1eb27bbd359b032e8a61fd4d0816b55e7f1ba403b37abdc81f180a920fb64285fef8062908b749e4f9572f2c44e3df684edc0bc4d9c6f81d9461ac399ba WHIRLPOOL 1b76bdabeb72b313eeb06f4839d67ba013948ac8a6f6907e4e6d02d3ae93bf5538b1f8d14673652c8a64d3c9cc10ff974e6036f6c8cf1591f433f5370025bba4 +DIST hdf-java-2.9-src.tar 14161920 SHA256 6c7d362b808df3671ab3d600ac664e500b25158e693168ef6b35d100ebb048e3 SHA512 6ff9baa2264873411b05f8b6c190d9b72a25deb1e20c4b8633ba192bcf8700e03977e1ef9839e178a3856f3483468bdde432b753e8298e7e09c3a3b669b4c207 WHIRLPOOL 5b2545e2681e87afc1ca0373460c1209c4b94876efcd5b3310c5bf9ac23ac920821fe98d82301c3ec1520aa23561151b57755e66d527a0ff5b9e5e6a597cf590 diff --git a/dev-java/hdf-java/files/hdf-java-2.9-shared.patch b/dev-java/hdf-java/files/hdf-java-2.9-shared.patch new file mode 100644 index 000000000..c0894807b --- /dev/null +++ b/dev-java/hdf-java/files/hdf-java-2.9-shared.patch @@ -0,0 +1,118 @@ +--- hdf-java/configure.in.orig 2012-11-13 03:12:03.000000000 +0400 ++++ hdf-java/configure.in 2012-11-25 21:12:40.074363619 +0400 +@@ -177,7 +177,7 @@ + *) + if test -n "$withval" ; then + z_lib="`echo $withval |cut -f2 -d, -s`" +- ZLIB=$z_lib"/libz."$LLEXT ++ ZLIB="-L$z_lib -lz" + HAVE_ZLIB="yes" + else + ZLIB="" +@@ -211,7 +211,7 @@ + *) + if test -n "$withval" ; then + jpeg_lib="`echo $withval |cut -f2 -d, -s`" +- JPEGLIB=$jpeg_lib"/libjpeg."$LLEXT ++ JPEGLIB="-L$jpeg_lib -ljpeg" + dnl AC_MSG_RESULT([jpeg found: $JPEGLIB]); + HAVE_JPEG="yes" + else +@@ -246,7 +246,7 @@ + *) + if test -n "$withval" ; then + sz_lib="`echo $withval |cut -f2 -d, -s`" +- SZLIB=$sz_lib"/libsz."$LLEXT ++ SZLIB="-L$sz_lib -lsz" + dnl AC_MSG_RESULT([szlib found: $SZLIB]); + HAVE_SZIP="yes" + else +@@ -302,7 +302,7 @@ + ;; + esac + if test -n "$HDF4LIB"; then +- LIBS="$HDF4LIB/libdf.$LLEXT $HDF4LIB/libmfhdf.$LLEXT $LIBS" ++ LIBS="-L$HDF4LIB -ldf -lmfhdf $LIBS" + HAVE_HDF4="yes" + fi + AC_MSG_RESULT([$HAVE_HDF4]) +@@ -363,7 +363,7 @@ + *) + if test -n "$withval" ; then + hdf5_lib="`echo $withval |cut -f2 -d, -s`" +- HDF5LIB=$hdf5_lib"/libhdf.$LLEXT" ++ HDF5LIB="-L$hdf5_lib -lhdf" + hdf5_inc="`echo $withval |cut -f1 -d,`" + if test -n "$hdf5_inc"; then + HDF5INC="$hdf5_inc" +@@ -380,7 +380,7 @@ + ;; + esac + if test -n "$HDF5LIB"; then +- LIBS="$HDF5LIB/libhdf5.$LLEXT $LIBS" ++ LIBS="-L$HDF5LIB -lhdf5 $LIBS" + HAVE_HDF5="yes" + fi + AC_MSG_RESULT([$HAVE_HDF5]) +@@ -637,10 +637,6 @@ + if test \( ! -d "$JH45INST" \); then + JH45INST_FOUND=0 + fi +- if test \( ! -w "$JH45INST" \); then +- AC_MSG_ERROR( [ $JH45INST : not writable ]) +- JH45INST_FOUND=0 +- fi + fi + until test $JH45INST_FOUND -eq 1; do + echo "Please type the directory in which to install the JH45" +@@ -649,10 +645,6 @@ + if test \( ! -d "$JH45INST" \); then + JH45INST_FOUND=0 + fi +- if test \( ! -w "$JH45INST" \); then +- AC_MSG_ERROR( [ $JH45INST : not writable ]) +- JH45INST_FOUND=0 +- fi + done + + ac_cv_lib_JH45INST=$JH45INST +--- a/native/hdf5lib/Makefile.in ++++ b/native/hdf5lib/Makefile.in +@@ -35,7 +35,7 @@ + + CFLAGS = -D_FILE_OFFSET_BITS=64 $(DEFS) -I. -I$(HDF5INC) -I$(JAVAINC1) -I$(JAVAINC2) + +-LIBS = $(HDF5LIB)/libhdf5.$(LLEXT) $(ZLIB) $(SZLIB) -lm ++LIBS = -L$(HDF5LIB) -lhdf5 $(ZLIB) $(SZLIB) -lm + + # Macro def: object filename used + OBJECTS = exceptionImp.o h5Constants.o h5Imp.o h5aImp.o h5dImp.o h5eImp.o h5fImp.o h5gImp.o h5iImp.o h5lImp.o h5oImp.o h5pImp.o h5rImp.o h5sImp.o h5tImp.o nativeData.o h5util.o h5zImp.o +@@ -47,7 +47,7 @@ + + libjhdf5: $(OBJECTS) + -mkdir -p $(LIBDIR); +- $(LD) $(LDOPT) -o $(LIBDIR)/libjhdf5.$(JSLEXT) $(LDOPT2) $(OBJECTS) $(LIBS) ++ $(LD) $(LDOPT) $(LDFLAGS) -o $(LIBDIR)/libjhdf5.$(JSLEXT) $(LDOPT2) $(OBJECTS) $(LIBS) + + clean: + $(RM) -f *.o so_locations $(LIBDIR)/libjhdf5.$(JSLEXT) +--- a/native/hdflib/Makefile.in ++++ b/native/hdflib/Makefile.in +@@ -41,7 +41,7 @@ + CFLAGS = $(DEFS) -I. -I$(JAVAINC1) -I$(JAVAINC2) -I$(HDFINC) + + # Be sure to add -lbsd if compiling in a SYSV environment +-LIBS = $(HDFLIB)/libmfhdf.$(LLEXT) $(HDFLIB)/libdf.$(LLEXT) $(SZLIB) $(ZLIB) $(JPEGLIB) -lm ++LIBS = -L$(HDFLIB) -lmfhdf -ldf $(SZLIB) $(ZLIB) $(JPEGLIB) -lm + + # Macro def: object filename used + OBJECTS = hdfstructsutil.o \ +@@ -60,7 +60,7 @@ + + libjhdf: $(OBJECTS) + -mkdir -p $(LIBDIR); +- $(LD) $(LDOPT) -o $(LIBDIR)/libjhdf.$(JSLEXT) $(LDOPT2) $(OBJECTS) $(LIBS) ++ $(LD) $(LDOPT) $(LDFLAGS) -o $(LIBDIR)/libjhdf.$(JSLEXT) $(LDOPT2) $(OBJECTS) $(LIBS) + + clean: + $(RM) -f *.o so_locations $(LIBDIR)/libjhdf.$(JSLEXT) diff --git a/dev-java/hdf-java/hdf-java-2.9.ebuild b/dev-java/hdf-java/hdf-java-2.9.ebuild new file mode 100644 index 000000000..98c9248f2 --- /dev/null +++ b/dev-java/hdf-java/hdf-java-2.9.ebuild @@ -0,0 +1,128 @@ +# Copyright 1999-2012 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Header: $ + +EAPI=4 +JAVA_PKG_IUSE="doc examples" +inherit eutils java-pkg-2 autotools fdo-mime + +DESCRIPTION="Java interface to the HDF5 library" +HOMEPAGE="http://www.hdfgroup.org/hdf-java-html/index.html" +SRC_URI="http://www.hdfgroup.org/ftp/HDF5/hdf-java/src/${P}-src.tar" + +LICENSE="NCSA-HDF" +SLOT="0" +KEYWORDS="~amd64 ~x86" +IUSE="hdf hdfview szip test zlib" + +CDEPEND=">=sci-libs/hdf5-1.8[szip=,zlib=] + hdf? ( sci-libs/hdf virtual/jpeg ) + hdfview? ( dev-java/fits dev-java/netcdf )" + +RDEPEND="${CDEPEND} + >=virtual/jre-1.5" + +DEPEND="${CDEPEND} + >=virtual/jdk-1.5 + test? ( >=dev-java/junit-4 )" + +REQUIRED_USE="hdfview? ( hdf )" + +# buggy test with incompatible hdf5 library versions +RESTRICT="test" + +S="${WORKDIR}/${PN}" + +src_prepare() { + epatch "${FILESDIR}"/${P}-shared.patch + eautoreconf + rm lib/*.jar + if use hdfview; then + java-pkg_jar-from --into lib fits fits.jar + java-pkg_jar-from --into lib netcdf netcdf.jar + fi + use test && java-pkg_jar-from --into lib junit-4 junit.jar +} + +src_configure() { + local stdpath="${EPREFIX}/usr/include,${EPREFIX}/usr/$(get_libdir)" + local myconf="--with-hdf4=no --with-libjpeg=no" + use hdf && \ + myconf="--with-libjpeg=${stdpath} --with-hdf4=${stdpath}" + use zlib && myconf="${myconf} --with-libz=${stdpath}" + use szip && myconf="${myconf} --with-libsz=${stdpath}" + + econf \ + ${myconf} \ + --with-hdf5="${stdpath}" \ + --with-jdk="$(java-config -o)/include,$(java-config -o)/jre/lib" +} + +src_compile() { + # gentoo bug #302621 + has_version sci-libs/hdf5[mpi] && export CXX=mpicxx CC=mpicc + + # parallel needs work. anyone? + emake -j1 ncsa just-hdf5 + + if use hdf; then + sed -i \ + -e "s/MAX_VAR_DIMS/H4_MAX_VAR_DIMS/" \ + native/hdflib/hdfstructsutil.c || die + sed -i \ + -e "s/MAX_NC_NAME/H4_MAX_NC_NAME/" \ + native/hdflib/hdf{vdata,sds}Imp.c || die + emake -j1 just-hdf4 + fi + + use hdfview && emake -j1 packages + use examples && emake -j1 do-examples + use doc && emake -j1 javadocs +} + +src_test() { + emake -j1 check +} + +src_install() { + java-pkg_dojar lib/jhdf5.jar + java-pkg_doso lib/linux/libjhdf5.so + + if use hdf; then + java-pkg_dojar lib/jhdf.jar + java-pkg_doso lib/linux/libjhdf.so + fi + + if use hdfview; then + java-pkg_dojar lib/jhdf5obj.jar + java-pkg_dojar lib/jhdfobj.jar + java-pkg_dojar lib/ext/nc2obj.jar + java-pkg_dojar lib/ext/fitsobj.jar + java-pkg_dojar lib/jhdfview.jar + cat <<-EOF > hdfview + #!/bin/sh + export CLASSPATH=\$(java-config --classpath hdf-java) + \$(java-config --java) \ + -Xmx1000m \ + -Djava.library.path=\$(java-config --library hdf-java) \ + ncsa.hdf.view.HDFView \ + -root "${EROOT}" \$* + EOF + dobin hdfview + insinto /usr/share/mime/packages + doins "${FILESDIR}"/hdfview.xml + newicon ncsa/hdf/view/icons/hdf_large.gif hdfview.gif + make_desktop_entry hdfview "HDF Viewer" hdfview + fi + + use doc && java-pkg_dojavadoc docs/javadocs + use examples && java-pkg_doexamples examples +} + +pkg_postinst() { + use hdfview && fdo-mime_desktop_database_update +} + +pkg_postrm() { + use hdfview && fdo-mime_desktop_database_update +} |