diff options
| -rw-r--r-- | profiles/package.mask | 1 | ||||
| -rw-r--r-- | sci-biology/inGAP-bin/Manifest | 1 | ||||
| -rw-r--r-- | sci-biology/inGAP-bin/inGAP-bin-3.0.1.ebuild | 40 | ||||
| -rw-r--r-- | sci-biology/inGAP-bin/metadata.xml | 15 |
4 files changed, 0 insertions, 57 deletions
diff --git a/profiles/package.mask b/profiles/package.mask index 29b07cf02..b3f8b7f46 100644 --- a/profiles/package.mask +++ b/profiles/package.mask @@ -39,7 +39,6 @@ sci-mathematics/scilab # Justin Lecher <jlec@gentoo.org> (9 Feb 2016) # rev dep masked -sci-biology/inGAP-bin # Andreas K. Huettel <dilfridge@gentoo.org> (1 Nov 2014) # Lab::Instrument and Lab::Tools provided as separate packages diff --git a/sci-biology/inGAP-bin/Manifest b/sci-biology/inGAP-bin/Manifest deleted file mode 100644 index 034d64ce4..000000000 --- a/sci-biology/inGAP-bin/Manifest +++ /dev/null @@ -1 +0,0 @@ -DIST inGAP_3_0_1.tgz 11581010 SHA256 71eaba294b30d85b6cc8431e778f92593419955d58f32118a6968e9551c27ff7 SHA512 914c26c65e3b063cf88f52546f2581fe188d90972db9ac89a26c0631908d92c6ddfbdde7050db780241d3b0e9935419a02a33b738c33933343658bdfb705e49f WHIRLPOOL e0d9243e5387990d09170b39becb6886f2747f38fc3cde2ab2ca12d457f621079e5b3b574125ea09b3634c0b4410cb7644445ba1e63fbf2e7017442e06ebf647 diff --git a/sci-biology/inGAP-bin/inGAP-bin-3.0.1.ebuild b/sci-biology/inGAP-bin/inGAP-bin-3.0.1.ebuild deleted file mode 100644 index c6f691422..000000000 --- a/sci-biology/inGAP-bin/inGAP-bin-3.0.1.ebuild +++ /dev/null @@ -1,40 +0,0 @@ -# Copyright 1999-2015 Gentoo Foundation -# Distributed under the terms of the GNU General Public License v2 - -EAPI=5 - -MY_PV="3_0_1" -S="${WORKDIR}"/inGAP_"${MY_PV}" - -inherit java-utils-2 - -DESCRIPTION="Detect SNPs and indels from Next-gen sequences using a Bayesian algorithm" -HOMEPAGE=" - http://sites.google.com/site/nextgengenomics/ingap - http://sourceforge.net/projects/ingap/" -SRC_URI="http://sourceforge.net/projects/ingap/files/ingap/v"${PV}"/inGAP_"${MY_PV}".tgz" - -LICENSE="LGPL-3" -SLOT="0" -KEYWORDS="~amd64" -IUSE="" - -DEPEND=">=virtual/jre-1.7:*" -RDEPEND="${DEPEND} - dev-java/jfreechart - dev-java/swing-layout - dev-java/jcommon - dev-java/itext - dev-java/bytecode - sci-biology/biojava - dev-java/absolutelayout" # gnujaxp ? - -src_install(){ - java-pkg_dojar inGAP.jar - java-pkg_dolauncher inGAP --jar inGAP.jar - # dobin external/bin/{primer3_core, run_cpp, trf} - newdoc manual.pdf inGAP_Manual.pdf - dodoc doc/manual.htm - insinto /usr/share/inGAP/manual_files - doins doc/manual_files/*.png -} diff --git a/sci-biology/inGAP-bin/metadata.xml b/sci-biology/inGAP-bin/metadata.xml deleted file mode 100644 index 4e706cb4c..000000000 --- a/sci-biology/inGAP-bin/metadata.xml +++ /dev/null @@ -1,15 +0,0 @@ -<?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> -<pkgmetadata> - <maintainer type="person"> - <email>mmokrejs@fold.natur.cuni.cz</email> - <name>Martin Mokrejs</name> - </maintainer> - <maintainer type="project"> - <email>sci-biology@gentoo.org</email> - <name>Gentoo Biology Project</name> - </maintainer> - <upstream> - <remote-id type="sourceforge">ingap</remote-id> - </upstream> -</pkgmetadata> |