9 files changed, 0 insertions, 198 deletions
diff --git a/sci-biology/pilercr/ChangeLog b/sci-biology/pilercr/ChangeLog
deleted file mode 100644
index 9292d29dd..000000000
--- a/sci-biology/pilercr/ChangeLog
+++ /dev/null
@@ -1,7 +0,0 @@
-# ChangeLog for sci-biology/piler-cr
-# Copyright 1999-2009 Gentoo Foundation; Distributed under the GPL v2
-# $Header: $
-
-  18 Feb 2009; weaver <weaver@gentoo.org> ChangeLog:
-  New package sci-biology/pilercr, ebuild written by me
-
diff --git a/sci-biology/pilercr/Manifest b/sci-biology/pilercr/Manifest
deleted file mode 100644
index 194466266..000000000
--- a/sci-biology/pilercr/Manifest
+++ /dev/null
@@ -1,5 +0,0 @@
-AUX pilercr-1.0-gcc43.patch 854 RMD160 b10c529c27fa821b0a6d0aac9bfb1f3b42d0c3d3 SHA1 c432e0a8dadaff8b216f398a6e97d4be26a88de0 SHA256 ee86cf9ad7ab5f18f9d06673c930d4c72f1e387c5b5fccc81044edbf613d7123
-DIST pilercr.tar.gz 1709144 RMD160 9dc295222f58e9134a88865ac6465678de6e3f20 SHA1 d91d173660c004c32017290c1ffb86930a179d67 SHA256 75f58d58567c478e271c4c554071a7d6d642e6daef8981ee2618daa7b53fa923
-EBUILD pilercr-1.0.ebuild 710 RMD160 783a238437a1382c462fa0d95916dd622998c6a6 SHA1 bd65c7bdc5883e3f56fb83f75d2129c4311a3bfe SHA256 b97c7905edf90202b8f38078ff537709714a96a5bfa8213eb66bb5ed3789a8eb
-MISC ChangeLog 231 RMD160 fc0907c45b93d02442fe64864e76d7017415794e SHA1 b3ca7278527b1dcdb01f9420bf32237849a4c3db SHA256 111f44c5b922a31c70f6e2e89dd9ce6823dad495fa8ab6e1911ce65d77d5cadb
-MISC metadata.xml 259 RMD160 d9d81b67d635fabd81aef8ae0edf971211ae9072 SHA1 8e32f751c67ff891fa35405a2cf6fb33752d6eb1 SHA256 541c3fbcf299d9a8ccf4132ee61f9e53a5d737cefdaa6fdc77764d8d4c7f3110
diff --git a/sci-biology/pilercr/files/.svn/all-wcprops b/sci-biology/pilercr/files/.svn/all-wcprops
deleted file mode 100644
index dd0406c3a..000000000
--- a/sci-biology/pilercr/files/.svn/all-wcprops
+++ /dev/null
@@ -1,11 +0,0 @@
-K 25
-svn:wc:ra_dav:version-url
-V 66
-/svn/proj/science/!svn/ver/1375/overlay/sci-biology/piler-cr/files
-END
-piler-cr-1.0-gcc43.patch
-K 25
-svn:wc:ra_dav:version-url
-V 91
-/svn/proj/science/!svn/ver/1375/overlay/sci-biology/piler-cr/files/piler-cr-1.0-gcc43.patch
-END
diff --git a/sci-biology/pilercr/files/.svn/entries b/sci-biology/pilercr/files/.svn/entries
deleted file mode 100644
index 425003e3b..000000000
--- a/sci-biology/pilercr/files/.svn/entries
+++ /dev/null
@@ -1,69 +0,0 @@
-9
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-dir
-1375
-https://overlays.gentoo.org/svn/proj/science/overlay/sci-biology/piler-cr/files
-https://overlays.gentoo.org/svn/proj/science
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-2009-02-19T02:43:54.268057Z
-1375
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-svn:special svn:externals svn:needs-lock
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-0
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-piler-cr-1.0-gcc43.patch
-file
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-
-2009-02-18T21:26:28.254393Z
-2752d6e8bbcf049aaba1638d56cb04f7
-2009-02-19T02:43:54.268057Z
-1375
-weaver
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diff --git a/sci-biology/pilercr/files/.svn/format b/sci-biology/pilercr/files/.svn/format
deleted file mode 100644
index ec635144f..000000000
--- a/sci-biology/pilercr/files/.svn/format
+++ /dev/null
@@ -1 +0,0 @@
-9
diff --git a/sci-biology/pilercr/files/.svn/text-base/piler-cr-1.0-gcc43.patch.svn-base b/sci-biology/pilercr/files/.svn/text-base/piler-cr-1.0-gcc43.patch.svn-base
deleted file mode 100644
index 7b49df872..000000000
--- a/sci-biology/pilercr/files/.svn/text-base/piler-cr-1.0-gcc43.patch.svn-base
+++ /dev/null
@@ -1,33 +0,0 @@
-diff -dur work/multaln.h work-orig/multaln.h
---- work/multaln.h	2007-04-17 19:02:18.000000000 +0000
-+++ work-orig/multaln.h	2009-02-18 21:25:26.166333299 +0000
-@@ -6,6 +6,7 @@
- #define _CRT_SECURE_NO_DEPRECATE	1
- #endif
- 
-+#include <cstring>
- #include <vector>
- #include <limits.h>
- #include <ctype.h>
-diff -dur work/seqvect.h work-orig/seqvect.h
---- work/seqvect.h	2006-04-06 23:36:18.000000000 +0000
-+++ work-orig/seqvect.h	2009-02-18 21:25:26.171090246 +0000
-@@ -1,6 +1,7 @@
- #ifndef SeqVect_h
- #define SeqVect_h
- 
-+#include <stdio.h>
- #include <vector>
- #include "seq.h"
- 
-diff -dur work/tree.h work-orig/tree.h
---- work/tree.h	2006-04-05 23:52:42.000000000 +0000
-+++ work-orig/tree.h	2009-02-18 21:25:26.171090246 +0000
-@@ -1,6 +1,7 @@
- #ifndef tree_h
- #define tree_h
- 
-+#include <stdlib.h>
- #include <limits.h>
- 
- class Clust;
diff --git a/sci-biology/pilercr/files/pilercr-1.0-gcc43.patch b/sci-biology/pilercr/files/pilercr-1.0-gcc43.patch
deleted file mode 100644
index 7b49df872..000000000
--- a/sci-biology/pilercr/files/pilercr-1.0-gcc43.patch
+++ /dev/null
@@ -1,33 +0,0 @@
-diff -dur work/multaln.h work-orig/multaln.h
---- work/multaln.h	2007-04-17 19:02:18.000000000 +0000
-+++ work-orig/multaln.h	2009-02-18 21:25:26.166333299 +0000
-@@ -6,6 +6,7 @@
- #define _CRT_SECURE_NO_DEPRECATE	1
- #endif
- 
-+#include <cstring>
- #include <vector>
- #include <limits.h>
- #include <ctype.h>
-diff -dur work/seqvect.h work-orig/seqvect.h
---- work/seqvect.h	2006-04-06 23:36:18.000000000 +0000
-+++ work-orig/seqvect.h	2009-02-18 21:25:26.171090246 +0000
-@@ -1,6 +1,7 @@
- #ifndef SeqVect_h
- #define SeqVect_h
- 
-+#include <stdio.h>
- #include <vector>
- #include "seq.h"
- 
-diff -dur work/tree.h work-orig/tree.h
---- work/tree.h	2006-04-05 23:52:42.000000000 +0000
-+++ work-orig/tree.h	2009-02-18 21:25:26.171090246 +0000
-@@ -1,6 +1,7 @@
- #ifndef tree_h
- #define tree_h
- 
-+#include <stdlib.h>
- #include <limits.h>
- 
- class Clust;
diff --git a/sci-biology/pilercr/metadata.xml b/sci-biology/pilercr/metadata.xml
deleted file mode 100644
index 3302123e5..000000000
--- a/sci-biology/pilercr/metadata.xml
+++ /dev/null
@@ -1,9 +0,0 @@
-<?xml version="1.0" encoding="UTF-8"?>
-<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
-<pkgmetadata>
-	<maintainer>
-		<email>weaver@gentoo.org</email>
-		<name>Andrey Kislyuk</name>
-	</maintainer>
-	<herd>sci-biology</herd>
-</pkgmetadata>
diff --git a/sci-biology/pilercr/pilercr-1.0.ebuild b/sci-biology/pilercr/pilercr-1.0.ebuild
deleted file mode 100644
index 972f7dacb..000000000
--- a/sci-biology/pilercr/pilercr-1.0.ebuild
+++ /dev/null
@@ -1,30 +0,0 @@
-# Copyright 1999-2009 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/muscle/muscle-3.7.ebuild,v 1.1 2008/03/21 21:23:44 dberkholz Exp $
-
-inherit eutils toolchain-funcs
-
-DESCRIPTION="Analysis of repetitive DNA found in genome sequences"
-HOMEPAGE="http://www.drive5.com/pilercr/"
-SRC_URI="http://www.drive5.com/pilercr/pilercr.tar.gz"
-LICENSE="public-domain"
-SLOT="0"
-KEYWORDS="~amd64 ~x86"
-IUSE=""
-DEPEND=""
-RDEPEND=""
-
-S="${WORKDIR}"
-
-src_unpack() {
-	unpack ${A}
-	epatch "${FILESDIR}"/${P}-gcc43.patch || die
-}
-
-src_compile() {
-	emake GPP="$(tc-getCXX)" CFLAGS="${CXXFLAGS}" || die
-}
-
-src_install() {
-	dobin pilercr || die
-}