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-rw-r--r--sci-chemistry/jmol/ChangeLog22
-rw-r--r--sci-chemistry/jmol/Manifest36
-rw-r--r--sci-chemistry/jmol/files/caffeine.xyz26
-rw-r--r--sci-chemistry/jmol/files/digest-jmol-11.0.33
-rw-r--r--sci-chemistry/jmol/files/index.html14
-rw-r--r--sci-chemistry/jmol/files/jmol-11.0.3-manifest.patch96
-rw-r--r--sci-chemistry/jmol/files/jmol-11.0.3-nointl.patch266
-rw-r--r--sci-chemistry/jmol/files/selfSignedCertificate.storebin1516 -> 0 bytes
-rw-r--r--sci-chemistry/jmol/jmol-11.0.3.ebuild122
-rw-r--r--sci-chemistry/jmol/metadata.xml9
10 files changed, 0 insertions, 594 deletions
diff --git a/sci-chemistry/jmol/ChangeLog b/sci-chemistry/jmol/ChangeLog
deleted file mode 100644
index 72a57a6a7..000000000
--- a/sci-chemistry/jmol/ChangeLog
+++ /dev/null
@@ -1,22 +0,0 @@
-# ChangeLog for sci-chemistry/jmol
-# Copyright 1999-2007 Gentoo Foundation; Distributed under the GPL v2
-# $Header: $
-
- 22 May 2007; Jeff Gardner <je_fro@gentoo.org> ChangeLog:
- Cleanup and get ready for portage migration.
-
- 16 May 2007; Jeff Gardner <je_fro@gentoo.org> ChangeLog:
- Removed 10.2.0 and improving on 11.0
-
- 14 Jan 2007; Marcus D. Hanwell <cryos@gentoo.org> ChangeLog:
- Corrected SRC_URI.
-
- 01 Nov 2006; Jeff Gardner <je_fro@gentoo.org> ChangeLog:
- Make sed statement more readable.
-
- 01 Nov 2006; Jeff Gardner <je_fro@gentoo.org> ChangeLog:
- Assorted ebuild fixes.
-
- 31 Oct 2006; Jeff Gardner <je_fro@gentoo.org> ChangeLog:
- Initial import of jmol-10.2.0.
-
diff --git a/sci-chemistry/jmol/Manifest b/sci-chemistry/jmol/Manifest
deleted file mode 100644
index 4cd380e3c..000000000
--- a/sci-chemistry/jmol/Manifest
+++ /dev/null
@@ -1,36 +0,0 @@
-AUX caffeine.xyz 1116 RMD160 92b432c6584cd927fa1bfb155ea41011ab7a82d8 SHA1 d0f35a447b333b8ea51c15ab0ac67d887556e43c SHA256 45a9afac0b247780595944a98f8e1076a7e7e0dbb3e02cb54cecb0764b1cb67f
-MD5 c0204ee82eba27bc55b8856ba8cdf6a4 files/caffeine.xyz 1116
-RMD160 92b432c6584cd927fa1bfb155ea41011ab7a82d8 files/caffeine.xyz 1116
-SHA256 45a9afac0b247780595944a98f8e1076a7e7e0dbb3e02cb54cecb0764b1cb67f files/caffeine.xyz 1116
-AUX index.html 328 RMD160 60d2a573c228e018a864fd7d9cfc7554264ccd6b SHA1 7ab256d768d3a4da43b5e497dfb1c3a53a8068a9 SHA256 8cba2c5eb7f25c0ecf23bc007eb61549a7d2177ac327db6c1e5f51f333ae2451
-MD5 fe4402e54486534640b0863007ad4877 files/index.html 328
-RMD160 60d2a573c228e018a864fd7d9cfc7554264ccd6b files/index.html 328
-SHA256 8cba2c5eb7f25c0ecf23bc007eb61549a7d2177ac327db6c1e5f51f333ae2451 files/index.html 328
-AUX jmol-11.0.3-manifest.patch 3726 RMD160 03e1e11fdd29fb63de15934fff166348577084b0 SHA1 925a957bc30e1fbab9fd773dc07f83411f667d30 SHA256 74cdf274352161ffdf155b34b8d9110dad9c4a15720467f73d301104005566bd
-MD5 79677cfda8337f3de16e14053ccf022e files/jmol-11.0.3-manifest.patch 3726
-RMD160 03e1e11fdd29fb63de15934fff166348577084b0 files/jmol-11.0.3-manifest.patch 3726
-SHA256 74cdf274352161ffdf155b34b8d9110dad9c4a15720467f73d301104005566bd files/jmol-11.0.3-manifest.patch 3726
-AUX jmol-11.0.3-nointl.patch 11109 RMD160 ea8808469e488c3c7d8a75d2273fefdae32c3011 SHA1 891b83352cdf940c0da2d903b1cf6a9da31f67d7 SHA256 56ad460779a0ecfb90ad61cf4cfae2fad9b017f9f78581a720241e4ea208b49a
-MD5 1084c3836521b45d5c3e786f445e2a74 files/jmol-11.0.3-nointl.patch 11109
-RMD160 ea8808469e488c3c7d8a75d2273fefdae32c3011 files/jmol-11.0.3-nointl.patch 11109
-SHA256 56ad460779a0ecfb90ad61cf4cfae2fad9b017f9f78581a720241e4ea208b49a files/jmol-11.0.3-nointl.patch 11109
-AUX selfSignedCertificate.store 1516 RMD160 583b7bab5578e1e32f649388b7009dc654df1199 SHA1 88d9123bdc1a376ba00e00c8abef4751adefe3a5 SHA256 81b69722530d94dc599ce79382a3386cce518baa7ab79fbb530d13483b51bed5
-MD5 bf2be32212c831e4fa369809a639b75d files/selfSignedCertificate.store 1516
-RMD160 583b7bab5578e1e32f649388b7009dc654df1199 files/selfSignedCertificate.store 1516
-SHA256 81b69722530d94dc599ce79382a3386cce518baa7ab79fbb530d13483b51bed5 files/selfSignedCertificate.store 1516
-DIST jmol-11.0.3-full.tar.gz 13578526 RMD160 53e34c52d6085635daea74cd9c5787da67ef483e SHA1 35dc9d3d3cfe08cbe3076a6939f62361b2c59c86 SHA256 210eb7d119e53ed0b7f41939321bcfcdb4d7312761d8002e340c83ff49664616
-EBUILD jmol-11.0.3.ebuild 3453 RMD160 9f1d87489acbe8068de058dcd61c3c0aae13687e SHA1 9e4d569eea6722899ab30a7fe49cebe9b1b290ff SHA256 5966c60b37f802c7af37552e70e0c7bd13367f98f16c58699d8dac58250f2449
-MD5 f55ce03dc3e5d74370f68098263b9a6b jmol-11.0.3.ebuild 3453
-RMD160 9f1d87489acbe8068de058dcd61c3c0aae13687e jmol-11.0.3.ebuild 3453
-SHA256 5966c60b37f802c7af37552e70e0c7bd13367f98f16c58699d8dac58250f2449 jmol-11.0.3.ebuild 3453
-MISC ChangeLog 684 RMD160 4d7023f3fe52237fee6b7e6e9ca634c3e328956a SHA1 ea08a67ebc14b332a683f3a1eef7287bb58f7f4a SHA256 37fbea4624fa0620ce64fa344f5e8964f743488263854dbbdf3b9974e93fdf13
-MD5 183686bbcd0fea591e33f1ac84def456 ChangeLog 684
-RMD160 4d7023f3fe52237fee6b7e6e9ca634c3e328956a ChangeLog 684
-SHA256 37fbea4624fa0620ce64fa344f5e8964f743488263854dbbdf3b9974e93fdf13 ChangeLog 684
-MISC metadata.xml 266 RMD160 971f2bb897a7b7766a06d390367337631c7bd824 SHA1 658ccc2742f866f2ff2df2f2089d680eccc8283e SHA256 067b147708e039efb017dfddd9de9c4d7ecd8c01bb131322a1062c68344fbf6d
-MD5 96e0a204a2daa3c03b7c556cafe62711 metadata.xml 266
-RMD160 971f2bb897a7b7766a06d390367337631c7bd824 metadata.xml 266
-SHA256 067b147708e039efb017dfddd9de9c4d7ecd8c01bb131322a1062c68344fbf6d metadata.xml 266
-MD5 4474d7ff73147d373b76fc7cc9361806 files/digest-jmol-11.0.3 256
-RMD160 f8d2a3980cf89147b84f30dd195c898ee07e258b files/digest-jmol-11.0.3 256
-SHA256 8c5917e259cefb8aae76765625422987300243e5e698c0149db9bf8ad3dcb3a1 files/digest-jmol-11.0.3 256
diff --git a/sci-chemistry/jmol/files/caffeine.xyz b/sci-chemistry/jmol/files/caffeine.xyz
deleted file mode 100644
index f0325b049..000000000
--- a/sci-chemistry/jmol/files/caffeine.xyz
+++ /dev/null
@@ -1,26 +0,0 @@
-24
-Caffeine
-H -3.3804130 -1.1272367 0.5733036
-N 0.9668296 -1.0737425 -0.8198227
-C 0.0567293 0.8527195 0.3923156
-N -1.3751742 -1.0212243 -0.0570552
-C -1.2615018 0.2590713 0.5234135
-C -0.3068337 -1.6836331 -0.7169344
-C 1.1394235 0.1874122 -0.2700900
-N 0.5602627 2.0839095 0.8251589
-O -0.4926797 -2.8180554 -1.2094732
-C -2.6328073 -1.7303959 -0.0060953
-O -2.2301338 0.7988624 1.0899730
-H 2.5496990 2.9734977 0.6229590
-C 2.0527432 -1.7360887 -1.4931279
-H -2.4807715 -2.7269528 0.4882631
-H -3.0089039 -1.9025254 -1.0498023
-H 2.9176101 -1.8481516 -0.7857866
-H 2.3787863 -1.1211917 -2.3743655
-H 1.7189877 -2.7489920 -1.8439205
-C -0.1518450 3.0970046 1.5348347
-C 1.8934096 2.1181245 0.4193193
-N 2.2861252 0.9968439 -0.2440298
-H -0.1687028 4.0436553 0.9301094
-H 0.3535322 3.2979060 2.5177747
-H -1.2074498 2.7537592 1.7203047
diff --git a/sci-chemistry/jmol/files/digest-jmol-11.0.3 b/sci-chemistry/jmol/files/digest-jmol-11.0.3
deleted file mode 100644
index 8a749a8f3..000000000
--- a/sci-chemistry/jmol/files/digest-jmol-11.0.3
+++ /dev/null
@@ -1,3 +0,0 @@
-MD5 09a589e1fc1099a522b96a7bda16fdd0 jmol-11.0.3-full.tar.gz 13578526
-RMD160 53e34c52d6085635daea74cd9c5787da67ef483e jmol-11.0.3-full.tar.gz 13578526
-SHA256 210eb7d119e53ed0b7f41939321bcfcdb4d7312761d8002e340c83ff49664616 jmol-11.0.3-full.tar.gz 13578526
diff --git a/sci-chemistry/jmol/files/index.html b/sci-chemistry/jmol/files/index.html
deleted file mode 100644
index 35a5d4921..000000000
--- a/sci-chemistry/jmol/files/index.html
+++ /dev/null
@@ -1,14 +0,0 @@
-<html>
- <head>
- <title>Jmol Test Page</title>
- <div align="center"> <b>All the Sugar and Twice the Caffeine.</b> <br><br>
- <script src="./Jmol.js"></script>
- </head>
- <body>
- <script>
- jmolInitialize("./"); // REQUIRED
- jmolApplet(400, "load ./caffeine.xyz");
- </script></div>
- </body>
-</html>
-
diff --git a/sci-chemistry/jmol/files/jmol-11.0.3-manifest.patch b/sci-chemistry/jmol/files/jmol-11.0.3-manifest.patch
deleted file mode 100644
index 3b43c219d..000000000
--- a/sci-chemistry/jmol/files/jmol-11.0.3-manifest.patch
+++ /dev/null
@@ -1,96 +0,0 @@
-diff -aurN jmol-11.0.3-orig/manifest/applet0.txt jmol-11.0.3/manifest/applet0.txt
---- jmol-11.0.3-orig/manifest/applet0.txt 1969-12-31 18:00:00.000000000 -0600
-+++ jmol-11.0.3/manifest/applet0.txt 2007-05-16 01:54:10.000000000 -0500
-@@ -0,0 +1,6 @@
-+Main-Class: JmolApplet
-+Sealed: true
-+
-+Name: org/jmol/api/
-+Sealed: false
-+
-diff -aurN jmol-11.0.3-orig/manifest/applet1.txt jmol-11.0.3/manifest/applet1.txt
---- jmol-11.0.3-orig/manifest/applet1.txt 1969-12-31 18:00:00.000000000 -0600
-+++ jmol-11.0.3/manifest/applet1.txt 2007-05-16 01:54:10.000000000 -0500
-@@ -0,0 +1,6 @@
-+Name: org/jmol/api/
-+Sealed: false
-+
-+Name: org/jmol/applet/
-+Sealed: true
-+
-diff -aurN jmol-11.0.3-orig/manifest/applet2.txt jmol-11.0.3/manifest/applet2.txt
---- jmol-11.0.3-orig/manifest/applet2.txt 1969-12-31 18:00:00.000000000 -0600
-+++ jmol-11.0.3/manifest/applet2.txt 2007-05-16 01:56:19.000000000 -0500
-@@ -0,0 +1,3 @@
-+Name: javax/vecmath/
-+
-+
-diff -aurN jmol-11.0.3-orig/manifest/applet3.txt jmol-11.0.3/manifest/applet3.txt
---- jmol-11.0.3-orig/manifest/applet3.txt 1969-12-31 18:00:00.000000000 -0600
-+++ jmol-11.0.3/manifest/applet3.txt 2007-05-16 01:56:47.000000000 -0500
-@@ -0,0 +1,4 @@
-+
-+Name: org/jmol/g3d/
-+Sealed: true
-+
-diff -aurN jmol-11.0.3-orig/manifest/applet4.txt jmol-11.0.3/manifest/applet4.txt
---- jmol-11.0.3-orig/manifest/applet4.txt 1969-12-31 18:00:00.000000000 -0600
-+++ jmol-11.0.3/manifest/applet4.txt 2007-05-16 01:57:05.000000000 -0500
-@@ -0,0 +1,4 @@
-+
-+Name: org/jmol/adapter/smarter/
-+Sealed: true
-+
-diff -aurN jmol-11.0.3-orig/manifest/applet5.txt jmol-11.0.3/manifest/applet5.txt
---- jmol-11.0.3-orig/manifest/applet5.txt 1969-12-31 18:00:00.000000000 -0600
-+++ jmol-11.0.3/manifest/applet5.txt 2007-05-16 01:57:23.000000000 -0500
-@@ -0,0 +1,4 @@
-+Name: org/openscience/jmol/ui/
-+Sealed: true
-+
-+
-diff -aurN jmol-11.0.3-orig/manifest/applet6.txt jmol-11.0.3/manifest/applet6.txt
---- jmol-11.0.3-orig/manifest/applet6.txt 1969-12-31 18:00:00.000000000 -0600
-+++ jmol-11.0.3/manifest/applet6.txt 2007-05-16 01:57:46.000000000 -0500
-@@ -0,0 +1,4 @@
-+
-+Name: org/jmol/viewer/
-+Sealed: true
-+
-diff -aurN jmol-11.0.3-orig/manifest/appletMain.txt jmol-11.0.3/manifest/appletMain.txt
---- jmol-11.0.3-orig/manifest/appletMain.txt 1969-12-31 18:00:00.000000000 -0600
-+++ jmol-11.0.3/manifest/appletMain.txt 2007-05-16 01:54:10.000000000 -0500
-@@ -0,0 +1,5 @@
-+Manifest-Version: 1.0
-+Sealed: true
-+
-+Name: org/jmol/api/
-+Sealed: false
-diff -aurN jmol-11.0.3-orig/manifest/appletMonolithic.txt jmol-11.0.3/manifest/appletMonolithic.txt
---- jmol-11.0.3-orig/manifest/appletMonolithic.txt 1969-12-31 18:00:00.000000000 -0600
-+++ jmol-11.0.3/manifest/appletMonolithic.txt 2007-05-16 01:54:10.000000000 -0500
-@@ -0,0 +1,7 @@
-+Main-Class: JmolApplet
-+Sealed: true
-+
-+Name: org/jmol/api/
-+Sealed: false
-+
-+
-diff -aurN jmol-11.0.3-orig/manifest/applet.txt jmol-11.0.3/manifest/applet.txt
---- jmol-11.0.3-orig/manifest/applet.txt 1969-12-31 18:00:00.000000000 -0600
-+++ jmol-11.0.3/manifest/applet.txt 2007-05-16 01:54:10.000000000 -0500
-@@ -0,0 +1,2 @@
-+Manifest-Version: 1.0
-+Sealed: true
-\ No newline at end of file
-diff -aurN jmol-11.0.3-orig/manifest/application.txt jmol-11.0.3/manifest/application.txt
---- jmol-11.0.3-orig/manifest/application.txt 1969-12-31 18:00:00.000000000 -0600
-+++ jmol-11.0.3/manifest/application.txt 2007-05-16 01:54:10.000000000 -0500
-@@ -0,0 +1 @@
-+Main-Class: org.openscience.jmol.app.Jmol
-diff -aurN jmol-11.0.3-orig/manifest/jvxl.txt jmol-11.0.3/manifest/jvxl.txt
---- jmol-11.0.3-orig/manifest/jvxl.txt 1969-12-31 18:00:00.000000000 -0600
-+++ jmol-11.0.3/manifest/jvxl.txt 2007-05-16 01:54:10.000000000 -0500
-@@ -0,0 +1 @@
-+Main-Class: org.openscience.jvxl.Jvxl
diff --git a/sci-chemistry/jmol/files/jmol-11.0.3-nointl.patch b/sci-chemistry/jmol/files/jmol-11.0.3-nointl.patch
deleted file mode 100644
index 25fd17e36..000000000
--- a/sci-chemistry/jmol/files/jmol-11.0.3-nointl.patch
+++ /dev/null
@@ -1,266 +0,0 @@
---- jmol-11.0.3-orig/build.xml 2007-05-17 09:35:04.000000000 -0500
-+++ jmol-11.0.3/build.xml 2007-05-17 09:40:21.000000000 -0500
-@@ -100,10 +100,6 @@
- <srcfiles dir="doc/source"
- includes="JmolGuide.docbook.xml, guide/*.docbook.xml"/>
- </uptodate>
-- <uptodate targetfile="build/doc/JmolUserGuide_fr/index.html">
-- <srcfiles dir="doc/source"
-- includes="JmolGuide_fr.docbook.xml, guide/*_fr.docbook.xml"/>
-- </uptodate>
- </and>
- </condition>
-
-@@ -113,14 +109,6 @@
- <srcfiles dir="doc/source"
- includes="JmolHistory.xml,JmolHistoryToHtml.xsl,history/changes.xml" />
- </uptodate>
-- <uptodate targetfile="build/doc/JmolHistory/ChangeLog_fr.html">
-- <srcfiles dir="doc/source"
-- includes="JmolHistory_fr.xml,JmolHistoryToHtml.xsl,history/changes_fr.xml" />
-- </uptodate>
-- <uptodate targetfile="build/doc/JmolHistory/ChangeLog_nl.html">
-- <srcfiles dir="doc/source"
-- includes="JmolHistory_nl.xml,JmolHistoryToHtml.xsl,history/changes_nl.xml" />
-- </uptodate>
- </and>
- </condition>
-
-@@ -130,14 +118,6 @@
- <srcfiles dir="doc/source"
- includes="JmolDevelopersGuide.docbook.xml"/>
- </uptodate>
-- <uptodate targetfile="build/doc/JmolDevelopersGuide_fr.html">
-- <srcfiles dir="doc/source"
-- includes="JmolDevelopersGuide_fr.docbook.xml"/>
-- </uptodate>
-- <uptodate targetfile="build/doc/JmolDevelopersGuide_de.html">
-- <srcfiles dir="doc/source"
-- includes="JmolDevelopersGuide_de.docbook.xml"/>
-- </uptodate>
- </and>
- </condition>
-
-@@ -147,14 +127,6 @@
- <srcfiles dir="doc/source"
- includes="JmolAppletGuide.docbook.xml, applet/*.docbook.xml"/>
- </uptodate>
-- <uptodate targetfile="build/doc/JmolAppletGuide_fr.html">
-- <srcfiles dir="doc/source"
-- includes="JmolAppletGuide_fr.docbook.xml, applet/*_fr.docbook.xml"/>
-- </uptodate>
-- <uptodate targetfile="build/doc/JmolAppletGuide_de.html">
-- <srcfiles dir="doc/source"
-- includes="JmolAppletGuide_de.docbook.xml"/>
-- </uptodate>
- </and>
- </condition>
-
-@@ -332,17 +304,12 @@
- </target>
-
- <target name="jar" id="jar"
-- depends="init,classes,jmolGuide,jmolHistory,jmolDevelopersGuide,libjars,main-i18n">
-+ depends="init,classes,jmolGuide,jmolHistory,jmolDevelopersGuide,libjars">
- <copy todir="${classes.dir}/org/openscience/jmol/Data/guide" >
- <fileset dir="build/doc/JmolUserGuide">
- <include name="**/*.html" />
- </fileset>
- </copy>
-- <copy todir="${classes.dir}/org/openscience/jmol/Data/guide_fr" >
-- <fileset dir="build/doc/JmolUserGuide_fr">
-- <include name="**/*.html" />
-- </fileset>
-- </copy>
- <copy todir="${classes.dir}/org/openscience/jmol/Data" >
- <fileset dir="build/doc/JmolHistory">
- <include name="**/*.html" />
-@@ -462,7 +429,6 @@
- <!-- note that this class is included in JmolApplet0.jar -->
- <exclude name="org/jmol/api/JmolAppletInterface.class" />
- <include name="org/jmol/applet/**" />
-- <include name="org/jmol/i18n/**" />
- <include name="org/jmol/popup/**" />
- </fileset>
- </jar>
-@@ -502,12 +468,6 @@
- </fileset>
- </jar>
-
-- <jar destfile="${jmol.applet.build.dir}/JmolApplet_i18n.jar" manifest="manifest/applet_i18n.txt" >
-- <fileset dir="${applet.classes.dir}">
-- <include name="org/jmol/translation/**" />
-- </fileset>
-- </jar>
--
- <!-- vvvvvvvvvvvvvvvvvvvvvvvvvvvvvvvvvvvvvvvvvvvvvvvvvvvvvvvvvvvvvv -->
- <!-- changes to this must be replicated below for the signed applet -->
- <jar destfile="${jmol.applet.build.dir}/JmolApplet0.jar"
-@@ -527,7 +487,6 @@
- <pathelement path="${jmol.applet.build.dir}/JmolApplet4.jar" />
- <pathelement path="${jmol.applet.build.dir}/JmolApplet5.jar" />
- <pathelement path="${jmol.applet.build.dir}/JmolApplet6.jar" />
-- <pathelement path="${jmol.applet.build.dir}/JmolApplet_i18n.jar" />
- </indexjars>
- </jar>
- <!-- changes to this must be replicated below for the signed applet -->
-@@ -564,10 +523,6 @@
- signedjar="${jmol.applet.build.dir}/JmolAppletSigned6.jar"
- keystore="selfSignedCertificate/selfSignedCertificate.store"
- storepass="selfSignedCertificate" alias="selfSignedCertificate" />
-- <signjar jar="${jmol.applet.build.dir}/JmolApplet_i18n.jar"
-- signedjar="${jmol.applet.build.dir}/JmolAppletSigned_i18n.jar"
-- keystore="selfSignedCertificate/selfSignedCertificate.store"
-- storepass="selfSignedCertificate" alias="selfSignedCertificate" />
-
- <!-- vvvvvvvvvvvvvvvvvvvvvvvvvvvvvvvvvvvvvvvvvvvvvvvvvvvvvvvvvvvvvv -->
- <!-- this one must be treated specially because of jar indexing
-@@ -589,7 +544,6 @@
- <pathelement path="${jmol.applet.build.dir}/JmolAppletSigned4.jar" />
- <pathelement path="${jmol.applet.build.dir}/JmolAppletSigned5.jar" />
- <pathelement path="${jmol.applet.build.dir}/JmolAppletSigned6.jar" />
-- <pathelement path="${jmol.applet.build.dir}/JmolAppletSigned_i18n.jar" />
- </indexjars>
- </jar>
- <signjar jar="${jmol.applet.build.dir}/JmolAppletSigned0.jar"
-@@ -599,7 +553,7 @@
- </target>
-
- <target name="dist" id="dist"
-- depends="doc,main-i18n,main,signed-applet">
-+ depends="doc,main,signed-applet">
- <!-- first build binary distribution -->
- <delete dir="build/dist/jmol-${version}"/>
- <mkdir dir="build/dist/jmol-${version}"/>
-@@ -655,7 +609,6 @@
- <fileset dir=".">
- <include name="applet.classes" />
- <include name="build.xml" />
-- <include name="build-i18n.xml" />
- </fileset>
- </copy>
-
-@@ -744,7 +697,6 @@
- <fileset dir=".">
- <include name="apisio.classes" />
- <include name="build.xml" />
-- <include name="build-i18n.xml" />
- </fileset>
- </copy>
-
-@@ -839,7 +791,7 @@
- <target name="xclean" id="xclean">
- </target>
-
-- <target name="spotless" id="spotless" depends="clean,spotless-i18n">
-+ <target name="spotless" id="spotless" depends="clean">
- <delete dir="build"/>
- <delete dir="${javadoc.dir}"/>
- <delete dir="packaging/rpm/dist"/>
-@@ -900,16 +852,6 @@
- <arg value="../../../doc/source/JmolGuide.docbook.xml" />
- <arg value="../../${docbook-xsl}/html/chunk.xsl" />
- </java>
-- <echo message="Generating user's guide (fr)" />
-- <mkdir dir="build/doc/JmolUserGuide_fr" />
-- <java fork="true" dir="build/doc/JmolUserGuide_fr"
-- classname="com.icl.saxon.StyleSheet"
-- classpath="${lib.dir}/saxon.jar" >
-- <jvmarg value="${proxyHost}" />
-- <jvmarg value="${proxyPort}" />
-- <arg value="../../../doc/source/JmolGuide_fr.docbook.xml" />
-- <arg value="../../${docbook-xsl}/html/chunk.xsl" />
-- </java>
- </target>
-
- <target name="jmolHistory" id="jmolHistory"
-@@ -924,26 +866,6 @@
- <arg value="../../../doc/source/JmolHistory.xml" />
- <arg value="../../../doc/source/JmolHistoryToHtml.xsl" />
- </java>
-- <echo message="Generating history of changes (fr)" />
-- <java fork="true" dir="build/doc/JmolHistory"
-- classname="com.icl.saxon.StyleSheet"
-- classpath="${lib.dir}/saxon.jar" >
-- <arg value="-o" />
-- <arg value="ChangeLog_fr.html" />
-- <arg value="../../../doc/source/JmolHistory_fr.xml" />
-- <arg value="../../../doc/source/JmolHistoryToHtml.xsl" />
-- <arg value="lang=fr" />
-- </java>
-- <echo message="Generating history of changes (nl)" />
-- <java fork="true" dir="build/doc/JmolHistory"
-- classname="com.icl.saxon.StyleSheet"
-- classpath="${lib.dir}/saxon.jar" >
-- <arg value="-o" />
-- <arg value="ChangeLog_nl.html" />
-- <arg value="../../../doc/source/JmolHistory_nl.xml" />
-- <arg value="../../../doc/source/JmolHistoryToHtml.xsl" />
-- <arg value="lang=nl" />
-- </java>
- </target>
-
- <target name="jmolDevelopersGuide" id="jmolDevelopersGuide"
-@@ -957,24 +879,6 @@
- <arg value="../../doc/source/JmolDevelopersGuide.docbook.xml" />
- <arg value="../${docbook-xsl}/html/docbook.xsl" />
- </java>
-- <echo message="Generating developer's guide (fr)" />
-- <java fork="true" dir="build/doc"
-- classname="com.icl.saxon.StyleSheet"
-- classpath="${lib.dir}/saxon.jar" >
-- <arg value="-o" />
-- <arg value="JmolDevelopersGuide_fr.html" />
-- <arg value="../../doc/source/JmolDevelopersGuide_fr.docbook.xml" />
-- <arg value="../${docbook-xsl}/html/docbook.xsl" />
-- </java>
-- <echo message="Generating developer's guide (de)" />
-- <java fork="true" dir="build/doc"
-- classname="com.icl.saxon.StyleSheet"
-- classpath="${lib.dir}/saxon.jar" >
-- <arg value="-o" />
-- <arg value="JmolDevelopersGuide_de.html" />
-- <arg value="../../doc/source/JmolDevelopersGuide_de.docbook.xml" />
-- <arg value="../${docbook-xsl}/html/docbook.xsl" />
-- </java>
- </target>
-
- <target name="jmolAppletGuide" id="jmolAppletGuide" depends="initdoc"
-@@ -988,24 +892,6 @@
- <arg value="../../doc/source/JmolAppletGuide.docbook.xml" />
- <arg value="../${docbook-xsl}/html/docbook.xsl" />
- </java>
-- <echo message="Generating applet guide (fr)" />
-- <java fork="true" dir="build/doc"
-- classname="com.icl.saxon.StyleSheet"
-- classpath="${lib.dir}/saxon.jar" >
-- <arg value="-o" />
-- <arg value="JmolAppletGuide_fr.html" />
-- <arg value="../../doc/source/JmolAppletGuide_fr.docbook.xml" />
-- <arg value="../${docbook-xsl}/html/docbook.xsl" />
-- </java>
-- <echo message="Generating applet guide (de)" />
-- <java fork="true" dir="build/doc"
-- classname="com.icl.saxon.StyleSheet"
-- classpath="${lib.dir}/saxon.jar" >
-- <arg value="-o" />
-- <arg value="JmolAppletGuide_de.html" />
-- <arg value="../../doc/source/JmolAppletGuide_de.docbook.xml" />
-- <arg value="../${docbook-xsl}/html/docbook.xsl" />
-- </java>
- </target>
-
- <target name="test" id="test" depends="main,compile-tests">
-@@ -1036,12 +922,4 @@
- <jar destfile="${tests.dir}/Tests.jar" basedir="${test-classes.dir}" />
- </target>
-
-- <!-- i18n stuff -->
-- <target name="main-i18n" depends="classes">
-- <ant antfile="build-i18n.xml" target="main-i18n"/>
-- </target>
-- <target name="spotless-i18n">
-- <ant antfile="build-i18n.xml" target="spotless-i18n"/>
-- </target>
--
- </project>
diff --git a/sci-chemistry/jmol/files/selfSignedCertificate.store b/sci-chemistry/jmol/files/selfSignedCertificate.store
deleted file mode 100644
index a7b0ccb86..000000000
--- a/sci-chemistry/jmol/files/selfSignedCertificate.store
+++ /dev/null
Binary files differ
diff --git a/sci-chemistry/jmol/jmol-11.0.3.ebuild b/sci-chemistry/jmol/jmol-11.0.3.ebuild
deleted file mode 100644
index b4be2cf5b..000000000
--- a/sci-chemistry/jmol/jmol-11.0.3.ebuild
+++ /dev/null
@@ -1,122 +0,0 @@
-# Copyright 1999-2007 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Header: $
-
-inherit eutils webapp java-pkg-2 java-ant-2
-
-DESCRIPTION="Jmol is a java molecular viever for 3-D chemical structures."
-SRC_URI="mirror://sourceforge/${PN}/${P}-full.tar.gz"
-HOMEPAGE="http://jmol.sourceforge.net/"
-KEYWORDS="~amd64 ~x86"
-LICENSE="LGPL-2.1"
-
-IUSE="client-only vhosts"
-
-WEBAPP_MANUAL_SLOT="yes"
-SLOT="0"
-SAXON_SLOT="6.5"
-
-RDEPEND=">=virtual/jre-1.4"
-DEPEND=">=virtual/jdk-1.4
- dev-java/ant-core
- dev-java/ant-contrib
- dev-java/commons-cli
- dev-java/itext
- dev-java/junit
- dev-java/gnu-jaxp
- dev-java/sax
- =dev-java/saxon-6.5.5
- sci-libs/jmol-acme
- sci-libs/vecmath-objectclub
- vhosts? ( app-admin/webapp-config )"
-
-pkg_setup() {
-
- if ! use client-only ; then
- webapp_pkg_setup || die "Failed to setup webapp"
- fi
-
-java-pkg-2_pkg_setup
-
-}
-
-src_unpack() {
-
- unpack ${A}
- epatch "${FILESDIR}"/${P}-nointl.patch
- epatch "${FILESDIR}"/${P}-manifest.patch
-
- sed -i -e '/^command=java/a source \/etc\/env.d\/java\/30jmol' "${S}/${PN}" || die "sed failed"
-
- mkdir "${S}"/selfSignedCertificate || die "Failed to create Cert directory."
- cp "${FILESDIR}"/selfSignedCertificate.store "${S}"/selfSignedCertificate/ \
- || die "Failed to install Cert file."
-
-# The only bundled jar we still rely on is netscape.jar.
- cd "${S}/jars"
-
- java-pkg_jar-from --build-only ant-contrib
- java-pkg_jar-from --build-only itext iText.jar itext-1.4.5.jar
- java-pkg_jar-from --build-only junit
- java-pkg_jar-from --build-only gnu-jaxp
- java-pkg_jar-from --build-only saxon-${SAXON_SLOT} saxon.jar saxon.jar
- java-pkg_jar-from --build-only commons-cli-1 commons-cli.jar commons-cli-1.0.jar
- java-pkg_jar-from --build-only jmol-acme jmol-acme.jar Acme.jar
- java-pkg_jar-from --build-only vecmath-objectclub vecmath-objectclub.jar vecmath1.2-1.14.jar
- java-pkg_jar-from --build-only gnu-jaxp gnujaxp.jar gnujaxp-onlysax.jar
-
-}
-
-src_install() {
-
-# java-pkg_jarinto /usr/share/${PN}/lib/
- java-pkg_dojar Jmol.jar JmolApplet.jar
- dohtml -r build/doc/* || die "Failed to install html docs."
- dodoc *.txt doc/*license* || die "Failed to install licenses."
- edos2unix jmol || die "Failed to convert jmol from DOS format."
- dobin jmol || die "Failed to install startup script."
-
- dodir /etc/env.d/java
- cat >> "${D}"/etc/env.d/java/30jmol << EOF
-JMOL_HOME=/usr/share/${PN}/lib
-EOF
-
- if ! use client-only ; then
- webapp_src_preinst || die "Failed webapp_src_preinst."
- cmd="cp Jmol.* "${D}${MY_HTDOCSDIR}"" ; ${cmd} \
- || die "${cmd} failed."
- cmd="cp jmol "${D}${MY_HTDOCSDIR}"" ; ${cmd} \
- || die "${cmd} failed."
- cmd="cp JmolApplet.* "${D}${MY_HTDOCSDIR}"" ; ${cmd} \
- || die "${cmd} failed."
- cmd="cp applet.classes "${D}${MY_HTDOCSDIR}"" ; ${cmd} \
- || die "${cmd} failed."
- cmd="cp -r build/classes/* "${D}${MY_HTDOCSDIR}"" ; ${cmd} \
- || die "${cmd} failed."
- cmd="cp -r build/appjars/* "${D}${MY_HTDOCSDIR}"" ; ${cmd} \
- || die "${cmd} failed."
- cmd="cp "${FILESDIR}"/caffeine.xyz "${D}${MY_HTDOCSDIR}"" ; ${cmd} \
- || die "${cmd} failed."
- cmd="cp "${FILESDIR}"/index.html "${D}${MY_HTDOCSDIR}"" ; ${cmd} \
- || die "${cmd} failed."
-
- webapp_src_install || die "Failed running webapp_src_install"
- fi
-
-}
-
-pkg_postinst() {
-
- if ! use client-only ; then
- webapp_pkg_postinst || die "webapp_pkg_postinst failed"
- fi
-
-}
-
-pkg_prerm() {
-
- if ! use client-only ; then
- webapp_pkg_prerm || die "webapp_pkg_prerm failed"
- fi
-
-}
diff --git a/sci-chemistry/jmol/metadata.xml b/sci-chemistry/jmol/metadata.xml
deleted file mode 100644
index 138b3bfab..000000000
--- a/sci-chemistry/jmol/metadata.xml
+++ /dev/null
@@ -1,9 +0,0 @@
-<?xml version="1.0" encoding="UTF-8"?>
-<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
-<pkgmetadata>
- <herd>sci-chemistry</herd>
- <maintainer>
- <email>je_fro@gentoo.org</email>
- <name>Jeff Gardner</name>
- </maintainer>
-</pkgmetadata>