diff options
-rw-r--r-- | sci-biology/afni/Manifest | 1 | ||||
-rw-r--r-- | sci-biology/afni/afni-19.3.12.ebuild | 72 |
2 files changed, 73 insertions, 0 deletions
diff --git a/sci-biology/afni/Manifest b/sci-biology/afni/Manifest index 7a32c9376..18e3dcb87 100644 --- a/sci-biology/afni/Manifest +++ b/sci-biology/afni/Manifest @@ -1,2 +1,3 @@ DIST afni-18.1.04.tar.gz 196776384 BLAKE2B 389c2dcf11bf3e3d067cbe1cce772a299b6f9096e21936616893041f72b2d3f490b3bed6ef10d94dd5f7c08436206379339a05384ac005349f55d40bb241e695 SHA512 16151d2512d115a2e4531932cbfd50cb1cf6c2e5c809d91fb439495d7d62f2d50f05f5f411395af0cc24e9a34bf8e98efd389b9e50bc75f783e051e7ab3db121 DIST afni-19.0.21.tar.gz 38228297 BLAKE2B 2d04b1d27c39bfbdfe9319a464920604b21f646e0f68d3d06d9ffffd7415e7c299fff983316834b84417a303229731abd2799a6f20e1edab56188726124ed436 SHA512 fbc01ca2acb5f6d64f539942661e9500407ccf5f6d583c7685eac85b81326414e3d9959372c49ed6f6b95f5b0fca2e936207a47313b753ffd3190dc8c474b78a +DIST afni-19.3.12.tar.gz 42337320 BLAKE2B f8f3347e38b7c4b3d720c3c49d5bc50f1057b1d3945e6a33b8415e84e7e539577e5eb351cfc61c53269b6a465619f900b9edcb25830ea056a53f54beb683b0ad SHA512 c4f9303312a89a6e87285646f58223df40b07329cf155bf251a48e8e63302988f103a97363d0666ddd8e9f62f762cf0c219bfc995265b4fe1f1ff5f782025371 diff --git a/sci-biology/afni/afni-19.3.12.ebuild b/sci-biology/afni/afni-19.3.12.ebuild new file mode 100644 index 000000000..c60a87138 --- /dev/null +++ b/sci-biology/afni/afni-19.3.12.ebuild @@ -0,0 +1,72 @@ +# Copyright 1999-2019 Gentoo Authors +# Distributed under the terms of the GNU General Public License v2 + +EAPI=7 + +inherit eutils multilib pax-utils toolchain-funcs + +DESCRIPTION="An open-source environment for processing and displaying functional MRI data" +HOMEPAGE="http://afni.nimh.nih.gov/" +SRC_URI="https://github.com/afni/afni/archive/AFNI_${PV}.tar.gz -> ${P}.tar.gz" + +LICENSE="GPL-3+" +SLOT="0" +KEYWORDS="~amd64 ~x86" +IUSE="" + +RDEPEND="dev-libs/expat + media-libs/glu + media-libs/netpbm + media-libs/qhull + media-video/mpeg-tools + sci-libs/gsl + sys-devel/llvm:* + virtual/jpeg:0 + x11-libs/libGLw + x11-libs/libXft + x11-libs/libXi + x11-libs/libXpm + x11-libs/motif[-static-libs]" + +# x11-libs/motif[static-libs] breaks the build. +# See upstream discussion +# http://afni.nimh.nih.gov/afni/community/board/read.php?1,85348,85348#msg-85348 + +DEPEND="${RDEPEND} + app-shells/tcsh" + +S="${WORKDIR}/${PN}-AFNI_${PV}/src" +BUILD="linux_fedora_19_64" +BIN_CONFLICTS=(qdelaunay whirlgif djpeg cjpeg qhull rbox count mpeg_encode) + +src_prepare() { + find -type f -exec sed -i -e "s/-lXp //g" {} + + cp other_builds/Makefile.${BUILD} Makefile || die "Could not copy Makefile" + # Unbundle imcat + sed -e "s/ imcat / /g" \ + -i Makefile.INCLUDE || die "Could not edit includes files." + sed -e "s~CC = /usr/bin/gcc -O2 -m64~CC = $(tc-getCC) \$(CFLAGS)~" \ + -e "s~CCMIN = /usr/bin/gcc -m64~CCMIN = $(tc-getCC) \$(CFLAGS)~" \ + -e "s~LD = /usr/bin/gcc~LD = $(tc-getCC)~" \ + -e "s~AR = /usr/bin/ar~AR = $(tc-getAR)~" \ + -e "s~RANLIB = /usr/bin/ranlib~RANLIB = $(tc-getRANLIB)~" \ + -i Makefile || die "Could not edit Makefile" + # they provide somewhat problematic makefiles :( + sed -e "s~ifeq ($(CC),gcc)~ifeq (1,1)~"\ + -i SUMA/SUMA_Makefile || die "Could not edit SUMA/SUMA_Makefile" + # upstream checks if $CC is EXACTLY gcc, else sets variables for Mac + find "${S}" -iname "*Makefile*" | xargs sed -e "s~/usr/~${EROOT}/usr/~g;" -i + eapply_user +} + +src_compile() { + emake -j1 all plugins suma_exec +} + +src_install() { + emake INSTALLDIR="${ED}/usr/bin" -j1 install install_plugins + emake INSTALLDIR="${ED}/usr/$(get_libdir)" -j1 install_lib + for CONFLICT in ${BIN_CONFLICTS[@]}; do + rm "${ED}/usr/bin/${CONFLICT}" + done +} |