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Diffstat (limited to 'dev-java/htsjdk/htsjdk-9999.ebuild')
-rw-r--r--dev-java/htsjdk/htsjdk-9999.ebuild53
1 files changed, 0 insertions, 53 deletions
diff --git a/dev-java/htsjdk/htsjdk-9999.ebuild b/dev-java/htsjdk/htsjdk-9999.ebuild
deleted file mode 100644
index 2123bbc55..000000000
--- a/dev-java/htsjdk/htsjdk-9999.ebuild
+++ /dev/null
@@ -1,53 +0,0 @@
-# Copyright 1999-2019 Gentoo Authors
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=7
-
-JAVA_PKG_IUSE="doc source"
-
-inherit git-r3 java-pkg-2 java-ant-2
-
-DESCRIPTION="Java API for high-throughput sequencing data (HTS) formats"
-HOMEPAGE="https://samtools.github.io/htsjdk/"
-EGIT_REPO_URI="https://github.com/samtools/htsjdk.git"
-
-LICENSE="MIT"
-SLOT="0"
-IUSE=""
-KEYWORDS=""
-
-CDEPEND="dev-java/commons-jexl:2
- dev-java/commons-compress:0
- dev-java/commons-logging:0
- dev-java/gradle-bin:*"
-
-DEPEND=">=virtual/jdk-1.8
- ${CDEPEND}"
-RDEPEND=">=virtual/jre-1.8
- ${CDEPEND}"
-
-EANT_BUILD_TARGET="all"
-EANT_NEEDS_TOOLS="true"
-JAVA_ANT_REWRITE_CLASSPATH="true"
-EANT_GENTOO_CLASSPATH="commons-jexl-2,commons-compress,commons-logging"
-
-java_prepare(){
- default
-}
-
-src_compile(){
- # work around gradle writing $HOME/.gradle and $HOME/.git
- # https://github.com/samtools/htsjdk/issues/660#issuecomment-232155965
- GRADLE_USER_HOME="${WORKDIR}" ./gradlew || die
-}
-
-src_install() {
- cd build/libs || die
-
- #for i in *-SNAPSHOT.jar; do
- # java-pkg_newjar $i ${i/-[0-9]*.jar/.jar}
- #done
- java-pkg_newjar "${S}"/build/libs/*-SNAPSHOT.jar htsjdk.jar
- use source && java-pkg_dosrc "${S}"/build/libs/*-sources.jar
- use doc && java-pkg_dojavadoc "${S}"/build/libs/*-javadoc.jar
-}