diff options
Diffstat (limited to 'dev-python/pynwb')
| -rw-r--r-- | dev-python/pynwb/Manifest | 2 | ||||
| -rw-r--r-- | dev-python/pynwb/metadata.xml | 24 | ||||
| -rw-r--r-- | dev-python/pynwb/pynwb-2.5.0.ebuild | 50 | ||||
| -rw-r--r-- | dev-python/pynwb/pynwb-2.6.0.ebuild | 51 |
4 files changed, 127 insertions, 0 deletions
diff --git a/dev-python/pynwb/Manifest b/dev-python/pynwb/Manifest new file mode 100644 index 000000000..0dffbb9ab --- /dev/null +++ b/dev-python/pynwb/Manifest @@ -0,0 +1,2 @@ +DIST pynwb-2.5.0.tar.gz 620770 BLAKE2B 470f5127560bf79f112061e9e8af208051d76833e449a66b03e31bb0828ffbfd6aa0b9efc136ecc0b7efba758334c3f15525a41ec4540c6f55d02f8afbd55ab2 SHA512 cad84e3ac6c3c67c3c28e3c3ec44402bfc94c4cf988fbe64ddfa461a67115398b24bb9bcac1bd00933e1b63d73048d9b20ec6cd736a51d9f2c7bf4d294edb261 +DIST pynwb-2.6.0.tar.gz 625188 BLAKE2B ac179af7e3c9de6ec4fb841dfd6279a1c3ba191b9d786553af02397a49c511f4a257a0e62f3b57a217ebb08588ad8ca64219fd435b3ec25776775d05e6a9ab9b SHA512 5c830cb37e8c6fe0643bd5bfee947565ddb1d0eff16dadadd3ebec7ec14a6e1ebcf34c3909ad05c3eedd8dd5f9e3669348216d695123f2013de0e969a403ec1c diff --git a/dev-python/pynwb/metadata.xml b/dev-python/pynwb/metadata.xml new file mode 100644 index 000000000..1e30097b2 --- /dev/null +++ b/dev-python/pynwb/metadata.xml @@ -0,0 +1,24 @@ +<?xml version='1.0' encoding='UTF-8'?> +<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<pkgmetadata> + <maintainer type="person"> + <email>gentoo@chymera.eu</email> + <name>Horea Christian</name> + </maintainer> + <maintainer type="project"> + <email>sci@gentoo.org</email> + <name>Gentoo Science Project</name> + </maintainer> + <longdescription lang="en"> + PyNWB is a Python package for working with NWB files. It provides a + high-level API for efficiently working with Neurodata stored in the NWB + format. Neurodata Without Borders: Neurophysiology (NWB:N) is a project + to develop a unified data format for cellular-based neurophysiology + data, focused on the dynamics of groups of neurons measured under a + large range of experimental conditions. + </longdescription> + <upstream> + <remote-id type="pypi">pynwb</remote-id> + <remote-id type="github">NeurodataWithoutBorders/pynwb</remote-id> + </upstream> +</pkgmetadata> diff --git a/dev-python/pynwb/pynwb-2.5.0.ebuild b/dev-python/pynwb/pynwb-2.5.0.ebuild new file mode 100644 index 000000000..ca11c3dbe --- /dev/null +++ b/dev-python/pynwb/pynwb-2.5.0.ebuild @@ -0,0 +1,50 @@ +# Copyright 1999-2023 Gentoo Authors +# Distributed under the terms of the GNU General Public License v2 + +EAPI=8 + +DISTUTILS_USE_PEP517=setuptools +PYTHON_COMPAT=( python3_{10..11} ) +inherit distutils-r1 pypi + +DESCRIPTION="A Python API for working with Neurodata stored in the NWB Format " +HOMEPAGE="https://github.com/NeurodataWithoutBorders/pynwb" + +SLOT="0" +LICENSE="BSD" +KEYWORDS="~amd64 ~x86" + +RDEPEND=" + >=dev-python/hdmf-3.3.2[${PYTHON_USEDEP}] + >=sci-libs/hdf5-1.12.2 + dev-python/h5py[${PYTHON_USEDEP}] + dev-python/numpy[${PYTHON_USEDEP}] + dev-python/pandas[${PYTHON_USEDEP}] + dev-python/python-dateutil[${PYTHON_USEDEP}] + dev-python/requests[${PYTHON_USEDEP}] + " + +EPYTEST_DESELECT=( + # Reported upsream: + # https://github.com/NeurodataWithoutBorders/pynwb/issues/1580 + tests/validation/test_validate.py::TestValidateCLI::test_validate_file_cached + tests/validation/test_validate.py::TestValidateCLI::test_validate_file_cached_bad_ns + tests/validation/test_validate.py::TestValidateCLI::test_validate_file_cached_core + tests/validation/test_validate.py::TestValidateCLI::test_validate_file_cached_extension + tests/validation/test_validate.py::TestValidateCLI::test_validate_file_cached_extension_pass_ns + tests/validation/test_validate.py::TestValidateCLI::test_validate_file_cached_hdmf_common + tests/validation/test_validate.py::TestValidateCLI::test_validate_file_cached_ignore + tests/validation/test_validate.py::TestValidateCLI::test_validate_file_invalid + tests/validation/test_validate.py::TestValidateCLI::test_validate_file_list_namespaces_core + tests/validation/test_validate.py::TestValidateCLI::test_validate_file_list_namespaces_extension + tests/validation/test_validate.py::TestValidateCLI::test_validate_file_no_cache + tests/validation/test_validate.py::TestValidateCLI::test_validate_file_no_cache_bad_ns + # Reported upstream: + # https://github.com/NeurodataWithoutBorders/pynwb/issues/1800 + tests/unit/test_file.py::TestNoCacheSpec::test_simple + # Not sandboxed, reported upstream: + # https://github.com/NeurodataWithoutBorders/pynwb/issues/1800 + tests/read_dandi/test_read_dandi.py::TestReadNWBDandisets::test_read_first_nwb_asset +) + +distutils_enable_tests pytest diff --git a/dev-python/pynwb/pynwb-2.6.0.ebuild b/dev-python/pynwb/pynwb-2.6.0.ebuild new file mode 100644 index 000000000..2f403981c --- /dev/null +++ b/dev-python/pynwb/pynwb-2.6.0.ebuild @@ -0,0 +1,51 @@ +# Copyright 1999-2023 Gentoo Authors +# Distributed under the terms of the GNU General Public License v2 + +EAPI=8 + +DISTUTILS_USE_PEP517=setuptools +PYTHON_COMPAT=( python3_{10..11} ) +inherit distutils-r1 pypi + +DESCRIPTION="A Python API for working with Neurodata stored in the NWB Format " +HOMEPAGE="https://github.com/NeurodataWithoutBorders/pynwb" + +SLOT="0" +LICENSE="BSD" +KEYWORDS="~amd64 ~x86" + +RDEPEND=" + >=dev-python/hdmf-3.3.2[${PYTHON_USEDEP}] + >=sci-libs/hdf5-1.12.2 + dev-python/h5py[${PYTHON_USEDEP}] + dev-python/numpy[${PYTHON_USEDEP}] + dev-python/pandas[${PYTHON_USEDEP}] + dev-python/python-dateutil[${PYTHON_USEDEP}] + dev-python/requests[${PYTHON_USEDEP}] + " + +EPYTEST_DESELECT=( + # Reported upsream: + # https://github.com/NeurodataWithoutBorders/pynwb/issues/1580 + tests/validation/test_validate.py::TestValidateCLI::test_validate_file_cached + tests/validation/test_validate.py::TestValidateCLI::test_validate_file_cached_bad_ns + tests/validation/test_validate.py::TestValidateCLI::test_validate_file_cached_core + tests/validation/test_validate.py::TestValidateCLI::test_validate_file_cached_extension + tests/validation/test_validate.py::TestValidateCLI::test_validate_file_cached_extension_pass_ns + tests/validation/test_validate.py::TestValidateCLI::test_validate_file_cached_hdmf_common + tests/validation/test_validate.py::TestValidateCLI::test_validate_file_cached_ignore + tests/validation/test_validate.py::TestValidateCLI::test_validate_file_invalid + tests/validation/test_validate.py::TestValidateCLI::test_validate_file_list_namespaces_core + tests/validation/test_validate.py::TestValidateCLI::test_validate_file_list_namespaces_extension + tests/validation/test_validate.py::TestValidateCLI::test_validate_file_no_cache + tests/validation/test_validate.py::TestValidateCLI::test_validate_file_no_cache_bad_ns + # Reported upstream: + # https://github.com/NeurodataWithoutBorders/pynwb/issues/1800 + tests/unit/test_file.py::TestNoCacheSpec::test_simple + # Not sandboxed, reported upstream: + # https://github.com/NeurodataWithoutBorders/pynwb/issues/1800 + tests/read_dandi/test_read_dandi.py::TestReadNWBDandisets::test_read_first_nwb_asset + tests/unit/test_base.py::TestTimeSeries::test_repr_html +) + +distutils_enable_tests pytest |