diff options
Diffstat (limited to 'dev-python/snakemake')
| -rw-r--r-- | dev-python/snakemake/Manifest | 2 | ||||
| -rw-r--r-- | dev-python/snakemake/metadata.xml | 6 | ||||
| -rw-r--r-- | dev-python/snakemake/snakemake-5.32.2.ebuild | 56 | ||||
| -rw-r--r-- | dev-python/snakemake/snakemake-7.32.4.ebuild | 67 |
4 files changed, 71 insertions, 60 deletions
diff --git a/dev-python/snakemake/Manifest b/dev-python/snakemake/Manifest index d82883f77..eca03bc0e 100644 --- a/dev-python/snakemake/Manifest +++ b/dev-python/snakemake/Manifest @@ -1 +1 @@ -DIST snakemake-5.32.2.tar.gz 7010842 BLAKE2B 70526d55ae058d4658c9486cad993fd626308c2ae21cc8e4a484c4f0916d5835ab27b6205e500b13303cae13f659bd542442b1e9a255b7f7f4b7cb4878694a17 SHA512 aa9c53f451bcf454209df25c5bbc795c4d67f27d1b3fe641ce9b788ee1350826e0a4d92514a50fbce58e5a3a462cca9c4015a58646a36a6a3f043381cc5b929d +DIST snakemake-7.32.4.gh.tar.gz 8885863 BLAKE2B 6bb7ff4722dd06f0edf5e8079b42f5e54d6f55f41e2987b7dae7f9b75df0d4d836138e28340e5977107a5cc0b5afe793b0d7897c501246cc1b4340eb4eca2f17 SHA512 34fef61528b18facab798652c88ed5c698ef02161e023255fdd024b7c7781c4e582cdb04b2740fdff9b6f3600acaec719742984acee57920bb48ef3b5af99d9a diff --git a/dev-python/snakemake/metadata.xml b/dev-python/snakemake/metadata.xml index cff648bf6..74c76cce1 100644 --- a/dev-python/snakemake/metadata.xml +++ b/dev-python/snakemake/metadata.xml @@ -6,11 +6,11 @@ <name>Michael Schubert</name> </maintainer> <maintainer type="project"> - <email>python@gentoo.org</email> - <name>Python</name> + <email>sci@gentoo.org</email> + <name>Gentoo Science Project</name> </maintainer> <upstream> - <remote-id type="bitbucket">johanneskoester/snakemake</remote-id> <remote-id type="pypi">snakemake</remote-id> + <remote-id type="github">snakemake/snakemake</remote-id> </upstream> </pkgmetadata> diff --git a/dev-python/snakemake/snakemake-5.32.2.ebuild b/dev-python/snakemake/snakemake-5.32.2.ebuild deleted file mode 100644 index 312699378..000000000 --- a/dev-python/snakemake/snakemake-5.32.2.ebuild +++ /dev/null @@ -1,56 +0,0 @@ -# Copyright 1999-2021 Gentoo Authors -# Distributed under the terms of the GNU General Public License v2 - -EAPI=7 - -PYTHON_COMPAT=( python3_{7,8} ) -DISTUTILS_USE_SETUPTOOLS=rdepend - -inherit distutils-r1 - -DESCRIPTION="Make-like task language" -HOMEPAGE="https://snakemake.readthedocs.io" -SRC_URI="https://github.com/${PN}/${PN}/archive/v${PV}.tar.gz -> ${P}.tar.gz" - -LICENSE="MIT" -SLOT="0" -KEYWORDS="~amd64 ~x86" - -# missing test dep google.cloud -RESTRICT="test" - -BDEPEND="test? ( - dev-python/requests-mock[${PYTHON_USEDEP}] - dev-python/google-api-python-client[${PYTHON_USEDEP}] - dev-python/jinja[${PYTHON_USEDEP}] - dev-python/networkx[${PYTHON_USEDEP}] - dev-python/pygments[${PYTHON_USEDEP}] - dev-python/pygraphviz[${PYTHON_USEDEP}] - dev-python/oauth2client[${PYTHON_USEDEP}] - net-libs/google-cloud-cpp -)" - -RDEPEND=" - dev-python/appdirs[${PYTHON_USEDEP}] - dev-python/configargparse[${PYTHON_USEDEP}] - dev-python/datrie[${PYTHON_USEDEP}] - dev-python/docutils[${PYTHON_USEDEP}] - dev-python/GitPython[${PYTHON_USEDEP}] - dev-python/jsonschema[${PYTHON_USEDEP}] - dev-python/nbformat[${PYTHON_USEDEP}] - dev-python/psutil[${PYTHON_USEDEP}] - dev-python/pyyaml[${PYTHON_USEDEP}] - dev-python/ratelimit[${PYTHON_USEDEP}] - dev-python/requests[${PYTHON_USEDEP}] - dev-python/toposort[${PYTHON_USEDEP}] - dev-python/wrapt[${PYTHON_USEDEP}] - sci-mathematics/pulp[${PYTHON_USEDEP}] -" - -distutils_enable_sphinx docs \ - dev-python/sphinxcontrib-napoleon \ - dev-python/sphinx-argparse \ - dev-python/sphinx_rtd_theme \ - dev-python/docutils \ - dev-python/recommonmark -distutils_enable_tests pytest diff --git a/dev-python/snakemake/snakemake-7.32.4.ebuild b/dev-python/snakemake/snakemake-7.32.4.ebuild new file mode 100644 index 000000000..711aac286 --- /dev/null +++ b/dev-python/snakemake/snakemake-7.32.4.ebuild @@ -0,0 +1,67 @@ +# Copyright 1999-2022 Gentoo Authors +# Distributed under the terms of the GNU General Public License v2 + +EAPI=8 + +PYTHON_COMPAT=( python3_{10..11} ) +DISTUTILS_USE_PEP517=setuptools + +inherit distutils-r1 + +DESCRIPTION="Make-like task language" +HOMEPAGE="https://snakemake.readthedocs.io" +SRC_URI="https://github.com/${PN}/${PN}/archive/v${PV}.tar.gz -> ${P}.gh.tar.gz" + +LICENSE="MIT" +SLOT="0" +KEYWORDS="~amd64" + +# cannot import name '_helpers' from 'google.cloud' +RESTRICT="test" + +BDEPEND=" + dev-python/tomli[${PYTHON_USEDEP}] + test? ( + dev-python/requests-mock[${PYTHON_USEDEP}] + dev-python/google-api-python-client[${PYTHON_USEDEP}] + dev-python/networkx[${PYTHON_USEDEP}] + dev-python/pygments[${PYTHON_USEDEP}] + dev-python/pygraphviz[${PYTHON_USEDEP}] + net-libs/google-cloud-cpp + ) +" + +RDEPEND=" + dev-python/appdirs[${PYTHON_USEDEP}] + dev-python/ConfigArgParse[${PYTHON_USEDEP}] + dev-python/connection_pool[${PYTHON_USEDEP}] + dev-python/datrie[${PYTHON_USEDEP}] + dev-python/docutils[${PYTHON_USEDEP}] + dev-python/GitPython[${PYTHON_USEDEP}] + dev-python/humanfriendly[${PYTHON_USEDEP}] + dev-python/jinja[${PYTHON_USEDEP}] + dev-python/jsonschema[${PYTHON_USEDEP}] + dev-python/nbformat[${PYTHON_USEDEP}] + dev-python/packaging[${PYTHON_USEDEP}] + dev-python/psutil[${PYTHON_USEDEP}] + dev-python/pyyaml[${PYTHON_USEDEP}] + dev-python/requests[${PYTHON_USEDEP}] + dev-python/reretry[${PYTHON_USEDEP}] + dev-python/smart-open[${PYTHON_USEDEP}] + dev-python/stopit[${PYTHON_USEDEP}] + dev-python/tabulate[${PYTHON_USEDEP}] + dev-python/throttler[${PYTHON_USEDEP}] + dev-python/toposort[${PYTHON_USEDEP}] + dev-python/wrapt[${PYTHON_USEDEP}] + dev-python/yte[${PYTHON_USEDEP}] + sci-mathematics/pulp[${PYTHON_USEDEP}] +" + +distutils_enable_sphinx docs \ + dev-python/sphinxcontrib-napoleon \ + dev-python/sphinx-argparse \ + dev-python/sphinx-rtd-theme \ + dev-python/docutils \ + dev-python/recommonmark \ + dev-python/myst-parser +distutils_enable_tests pytest |